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Query: 1cv8_A mol:protein length:174 STAPHOPAIN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YNEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMTQDAKNNVIPVSNGDHYQWYSSIYGYLast
1 -90.4001cv8_A mol:protein length:174 STAPHOPAIN  ali model  100  1YNEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMTQDAKNNVIPVSNGDHYQWYSSIYGY 174
2 -79.1001pxv_A mol:protein length:183 cysteine protease  ali model follow..  46  5.QVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSNPNDPHLGHALAVVGNAKINDQ-EKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 177
3 -77.5001y4h_A mol:protein length:188 cysteine protease  ali model follow..  47  10.QVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNPHLGHALAVVGNAK-INDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 182
4 -64.9001x9y_A mol:protein length:367 cysteine proteinase  ali model follow..  47  187.QVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNNDPHLGHALAVVGNAKINDQ-EKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 359
5 -31.0003erv_A mol:protein length:236 putative C39-like peptidase  ali model follow..  11  27.NRDEKVILSNVPIQQLPELDRGCEVTSLAMMLQYAGIT--VDKMKLANEI-GNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITNANGDVSITYNEHCVVLIGYDQ-----ESVYIRDPLKDSLDV......................... 202
6 -24.0003ois_A mol:protein length:291 Cysteine protease  ali model follow..  14  57........LTPPFQVYDQGRIGSCTANALAAAIQFEQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSNDTLEGGHAVLCVGYD---DEIRHFRIRNSWGNN--------------------VGEDGYFW 262
7 -22.5006a0n_A mol:protein length:343 Lpg2622  ali model follow..  11  67..PRKVKLGMQLTPVLDQGYHGSCVTFAVTAAIDAADYISQLCNLELGSYLAIHDKAKASGWNGSFGYWVLQQISEYGIISQNYDMNQIVYQIKEELAKGNRLTIGMLLDAMNGMIYAGHELVITGYDDDHVNKGVFTLRNSWSKF--------------------AGDQGDYY 314
8 -22.5002btw_A mol:protein length:254 ALR0975 PROTEIN  ali model follow..  12  59...........SMQFVTQVNQAYCGVASIIMVLNSLGINAPFTQDNFFSNEKTKIAPEVVARQGMTLDELGRLIASYGVKVKVNHASDT-KQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTD---RFLIMDV................................ 203
9 -22.3003k8u_A mol:protein length:156 Putative ABC transporter, ATP-binding protein ComA  ali model follow..  10  10................PQIDTRDCGPAVLASVAKHYGSNYSIAY----------RELSKTNKQGTTALGIVEAAKKLGFETRSIKADMTLFDYND----TYPFIVHVI-----KGKRLQHYYVVYGSQNNQ----IIGDPDPSVKVTRMSKERFQS---------EWTGLAI.. 136
10 -18.2004d8b_A mol:protein length:261 Streptopain  ali model follow..  8  21YNPVIEKVKPGEQSFVGQHAATGCVATATAQIMKYHNRESNVQKMAISELMASVDMDYGPSSGSAGSSRVQRALKEN-INRSDFSKQDWEAQIDKELSQNQPVYYQ------GVGKVGGHAFVIDGADGRN----FYHVN------------------------WGWGGVSDGF 221
11 -18.1003zua_A mol:protein length:142 ALPHA-HEMOLYSIN TRANSLOCATION ATP-BINDING PROTEIN HLYB  ali model follow..  7  7................DSCHKIDYGLYALEILAQYHNVSVNPEE----------KHRFDTDGTGLGLTSWLLAAKSLELKVKQVK--KTIDRLNF----SLPALVWR---------EDGRHFILTKVS--KEANRYLIFDLEQRNP-RVLEQSEFEALYQG............. 125
12 -17.3003bba_A mol:protein length:251 interpain A  ali model follow..  14  43.......................CVATATAQVLNYFGNYTEAEANAVATLMLEMQYGGPNEGSGAYMTDCAAGLTYFGFTDAEYITRANYTDVFSELTKGHPLIYG--VSPGSMGQDAGHAFVIDGYNKAG----LVSVN------------------------WGWNGDVDGY 220
13 -16.7003bb7_A mol:protein length:321 interpain A  ali model follow..  13  116.......................AVATATAQVLNYFGNYTEAEANAVATLMLEMQYGGPNEGSGAYMTDCAAGLTYFGFTDAEYITRANYTDVFSELTKGHPLIYG--VSPGSMGQDAGHAFVIDGYNKAG----LVSVN------------------------WGWNGDVDGY 293
14 -16.6001dki_A mol:protein length:371 PYROGENIC EXOTOXIN B ZYMOGEN  ali model follow..  7  165.......................SVATATAQIMKYHNRESNVQKMAISELMASVDMDYGPSSGSAGSSRVQRALENFGYNQSVHQINRGEAQIDKELSQNQPVYYQ------GVGKVGGHAFVIDGADGRN----FYHVN------------------------WGWGGVSDGF 339
15 -16.0001pvj_A mol:protein length:368 pyrogenic exotoxin B  ali model follow..  8  162.......................CVATATAQIMKYHGRESNVQKMAISELMASVDMDYGPSSGSAGSSRVQRALENFGYNQSVHQINRGEAQIDKELSQNQPVYYQ------GVGKVGGHAFVIDGADGRN----FYHVN------------------------WGWGGVSDGF 336
16 -14.8006mir_A mol:protein length:215 Ananain  ali model follow..  14  13...........VTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDCAVSYGCKGGWINKAYSFIISNKGVASAYTYVQRNNERNMMYAVSNQPIAAALDASGNFQHYKRGHAIVIIGYGQDSSGKKFWIVRNSWGAG............................ 183
17 -14.4002z84_A mol:protein length:218 Ufm1-specific protease 1  ali model follow..  8  32.......LYYHYGCDGLDDRGWGCGYRTLQTLCSWPGGQSSGALQGALEAMGDKPPGFRGSRNWIGCVEASLCLEHFGPQGRLCPRGVGLRGEEERLTGGGPVMVGGD--------ADAQSKALLGICEGPGSEVYVLILDPHTPKNRCELQAAGWVGWQKVKSVFDSNSFYNL 206
18 -14.4003oqc_A mol:protein length:481 Ufm1-specific protease 2  ali model follow..  10  297.............MQDRIDDNGWSAYRSLQTICSWFRHQGYTERQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLGVTSKILNQGSEMASQGRELNVGTPVMVG----------GGVLAHTILGVANETTGQIKFLILDP------HYTGAEDLQVMLEKGWCGWKDAYYNL 466
19 -14.3006fge_A mol:protein length:348 Zinc finger with UFM1-specific peptidase domain protein  ali model follow..  15  119.............FHSSLGDKGWCGYRNFQMLLSSLLQNDAYNQSMIEDAWKEGFDPQGASQLNNRACEVYILLTSLRVKCHIVGPLGTHPRLFEWILNKPPIYLQ----------HQGHSRTVIGIEEKKNRTLCLLILDP................................ 283
20 -14.1002wbf_X mol:protein length:265 SERINE-REPEAT ANTIGEN PROTEIN  ali model follow..  16  11NRLKDENNCISNLQVEDQGNCDTSWIFASKYHLE--YEPTKISALYVAN---YKGEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYKIIKTEVMNKGSVIAYIKAENVMGYEFSGHAVNIVGYNSEGEKKSYWIVRNSWGPY--------------------WGDEGY.. 236
21 -13.7005xda_A mol:protein length:565 Ufm1-specific protease  ali model follow..  8  386.............MQDGIDDSGWSAYRSFQTIWSWFILNGYTDKQQALVDIQDKQAKFVGSRQWIGSTEISFVLNELKLECRFINSGAEVVERVRELTSGTPVMIG----------GNMLAHTILGVDNDTTGETKFLVLDP------HYTGSEDIKTITSKGWCAWKDHFYNM 555
22 -13.6004ry2_A mol:protein length:730 ABC-type bacteriocin transporter  ali model follow..  8  17................RQYDLTDCGAACLSSIAQYYGLKMSLAK----------REMTGTDTQGTNAYGLIHAAKQLGFSAKGVK--ASKEDLLKDFR---PAIANVIVDNRLA-----HFVVIYSIKN-----RIITVADPGKGIVRYSMDD..................... 130
23 -13.6003bpm_A mol:protein length:243 Cysteine protease falcipain-3  ali model follow..  12  32...........VTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDVSIPDDKFKEALRYLGPISISIAASDDFAFYRGGHAVILVGYGMKDEKFYYYIIKNSWGSD--------------------WGEGGY.. 217
24 -13.6001deu_A mol:protein length:277 PROCATHEPSIN X  ali model follow..  13  44.NVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGEGGNDLSVWDYAHQHGIPDETYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGHVVSVAGW-GISDGTEYWIVRNSWGEP--------------------WGER--GW 246
25 -13.4001yvb_A mol:protein length:241 falcipain 2  ali model follow..  14  30...........VTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGHAVMLVGFGMKEEKHYYYIIKNSWGQQ............................ 209
26 -13.3005jt8_A mol:protein length:333 Blo t 1 allergen  ali model follow..  13  125...........LTRIRQQGSCGSCWAFAAAGVAE-KQQSIELSEQELVDCTYNRYDPSYQCNGSGYSTEAFKYMIRTGLVEERLRYHSSDEDVMYTIQQHGPVVIYMHGSNNYNDAYTDHAVILVGW-GTVQGVDYWIIRNSWGTG--------------------WGNGGY.. 312
27 -13.3003b79_A mol:protein length:129 Toxin secretion ATP-binding protein  ali model follow..  8  1.................SNAMKDPLLNSLIYVSRYYG--LANSPEALVNGL-------PLSDGKLTPFLLPRAAERAGLVAKENR--AELEKISSLI----PAILVLK---------GGDSCVLNSIN--METREAEVTTLESGMVPISIPLEDLLEQYTG............. 119
28 -13.3001jqp_A mol:protein length:438 dipeptidyl peptidase I  ali model follow..  15  221...........VSPVRNQESCGSCYSFASLGMLE--SQTPILSPQEVVS-----SPYAQGCDGGFPYLIAGKYAQDFGVVEENFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGHAVLLVGYKDPVTGLDYWIVKNSWGSQ--------------------WGES--GY 413
29 -13.3003pdf_A mol:protein length:441 Dipeptidyl peptidase 1  ali model follow..  15  222...........VSPVRNQASCGSCYSFASMGMLE--SQTPILSPQEVVS-----SQYAQGCEGGFPYLIAGKYAQDFGLVEEAFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGHAVLLVGYTDSASGMDYWIVKNSWGTG--------------------WGEN--GY 414
30 -13.2002vhs_A mol:protein length:217 CATHSILICATEIN  ali model follow..  16  13...........VTPVKNQGQCGASYAFSATGALE-TGRLISLSEQNLVD---SGPQGNEGCNGGLMDYAFQYVQDNGGLDSEFVDIPKQEKALMKAVATVGPISVAIDAGHESSSSSLNHAMLVVGYGFISNNQKYWLVKNSWGEE............................ 189
31 -13.0001y08_A mol:protein length:323 hypothetical protein SPy0861  ali model follow..  11  59..........DITKTFNGKDDLLSGAATAGNMLHWW---FDQNKDQIKRYLEEHPEKQKINFNGEQMFDVKEAIDTKNHQLDSKNLKEISDLIKKELTEGKALGLSHTYANVR----INHVINLWGADFDSNGNKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISWNQT.... 316
32 -12.8004hwy_A mol:protein length:340 Cysteine peptidase C (CPC)  ali model follow..  13  110...........IPQIADQSACGSCWAVAAASAMS--VQDVHISAGDLLACCSDCGDG-----NGGDPDRAWAYFSSTGLVSDTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGHAVRLVGW-GTSNGVPYWKIANSWNTE--------------------WGMD--GY 313
33 -12.8003hhi_A mol:protein length:325 Cathepsin B-like cysteine protease  ali model follow..  13  88...........IPQIADQSACGSCWAVAAASAMS--VQDVHISAGDLLACCSDCGDG-----NGGDPDRAWAYFSSTGLVSDTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGHAVRLVGW-GTSNGVPYWKIANSWNTE--------------------WGMDGY.. 291
34 -12.7004bpv_A mol:protein length:225 CATHEPSIN S  ali model follow..  13  20...........VTEVKYQGSCGACWAFSAVGALE-TGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEADAS-PFGDEDALKEAVATKGPVSVGIDYDDPSCTGNVNHGVLVVGY-GTLDGKDYWLVKNSWGLN............................ 197
35 -12.7005fpw_A mol:protein length:321 PRO CATHEPSIN B S9  ali model follow..  11  85...........IREIADQSACRASWAVSTASVISYCTVGGVQQLRISAAHLLSCCKQCGGGCKGGFPGFAWRYYVEYGIASSTYLLLHGEEDYKRELYFNGPFVAVFYVYTDLFAYKSGTAVKVVGW-GKLNGTPYWKVANTWDTD--------------------WGMDGY.. 288
36 -12.7003u8e_A mol:protein length:222 Papain-like Cysteine Protease  ali model follow..  11  13...........VTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNG--DGYTNVPNSSSALLDAVAKQ-PVSVNIYTSSSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTE............................ 188
37 -12.6002avw_A mol:protein length:311 IgG-degrading protease  ali model follow..  11  53..........DITKTFNGKDDLLAGAATAGNMLHWW---FDQNKDQIKRYLEEHPEKQKINFNGEQMFDVKEAIDTKNHQLDSKNLKEISDLIKKELTEGKALGLSHTYANVR----INHVINLWGADFDSNGNKAIYVTDSDSNASIGMKKYFVGVNSAGKVAISWNQT.... 310
38 -12.6004ci7_A mol:protein length:470 CELL SURFACE PROTEIN (PUTATIVE CELL SURFACE-ASSOCIATED CYSTEINE PROTEASE)  ali model follow..  12  77...........TTPAKNQGSLNTAWSFSGMSTLE--YGTYDLSEEHLRWWATGGKYGWNLDSGSSNVTAIGYLTAWAGPKLEKDI-NKDKETVKNAIMQYGSVTSGYAHYSTNKRAPLNHAVAIVGWDDNYSKDNFASDVKPESNGAWLVKSS-------------WGEF--GF 278
39 -12.5001pbh_A mol:protein length:317 PROCATHEPSIN B  ali model follow..  14  80...........IKEIRDQGSCGSCWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSGSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGHAIRILGW-GVENGTPYWLVANSWNTD--------------------WGDNGF.. 293
40 -12.5001mir_A mol:protein length:322 PROCATHEPSIN B  ali model follow..  12  79...........IAQIRDQGSCGSSWAFGAVEAMS--RVNVEVSAEDLLTCCGIQCGDG----NGGYPSGAWNFWTRKGLVSGSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGHAIRILGW-GIENGVPYWLVANSWNAD--------------------WGDNGF.. 292
41 -12.5001m6d_A mol:protein length:214 Cathepsin F  ali model follow..  12  13...........VTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLG--QDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGDHAVLLVGY-GQRSDVPFWAIKNSWGTD............................ 186
42 -12.2001gmy_A mol:protein length:261 CATHEPSIN B  ali model follow..  14  18...........IKEIRDQGSCGSCWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGHAIRILGW-GVENGTPYWLVANSWNTD--------------------WGDNGF.. 231
43 -12.2003qt4_A mol:protein length:329 Cathepsin-L-like midgut cysteine proteinase  ali model follow..  13  121...........VSEVKDQGQCGSSWSFSTTGAVE-RGRLTSLSEQNLIDCSSSYGNAG----DGGWMDSAFSYIHDYGIMSESA-PSGDENSLADAVGQAGPVAVAIDATDELQFYSGGHGVLVVGY-GSDNGQDYWILKNSWGSG--------------------WGESGY.. 301
44 -12.2001s4v_A mol:protein length:229 cysteine endopeptidase  ali model follow..  14  14...........VTSVKDQGQCGSCWAFSTIVAVE-TNKLVSLSEQELVD----DTDQNQGCNGGLMDYAFEFIKQRGGITTEHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEHGVAIVGYGTTIDGTKYWTVKNSWGPE............................ 188
45 -12.1001yal_A mol:protein length:218 CHYMOPAPAIN  ali model follow..  14  13...........VTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSHAVTAVGY-GTSDGKNYIIIKNSWGPN............................ 184
46 -12.1001ito_A mol:protein length:256 Cathepsin B  ali model follow..  14  17...........IKEIRDQGSCGSCWAFGAVEAIS--RVNVEVSAEDMLTCCGGECGDG----NGGFPSGAWNFWTKKGLVSGSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGHAIRILGW-GVENGTPYWLVGNSWNTD--------------------WGDNGF.. 230
47 -12.1003cbj_A mol:protein length:266 Cathepsin B  ali model follow..  13  23...........IKEIRDQGSCGSAWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGHAIRILGW-GVENGTPYWLVANSWNTD--------------------WGDNGF.. 236
48 -12.1002o6x_A mol:protein length:310 Secreted cathepsin L 1  ali model follow..  13  104...........VTEVKDQGNCGSGWAFSTTGTME-ERTSISFSEQQLVDCSRPWGNNG----GGGLMENAYQYLKQFGLETESS-HSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGHAVLAVGY-GTQGGTDYWIVKNSWGLS--------------------WGERGY.. 284
49 -12.0001gec_E mol:protein length:216 GLYCYL ENDOPEPTIDASE  ali model follow..  13  13...........VTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQNGIHLRVGRVQSNNEGSLLNAIAHQPVSVVVESAEGSCGTKVDHAVTAVGY-GKSGGKGYILIKNSWGPG............................ 184
50 -12.0003qj3_A mol:protein length:331 Cathepsin L-like protein  ali model follow..  13  122...........VSPVKNQGSCGSSWAFSSTGAIEMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGHAVLIVGY-GNENGQDYWLVKNSWGDG--------------------WGLDGY.. 303
51 -12.0004i04_A mol:protein length:323 Cathepsin B-like peptidase (C01 family)  ali model follow..  11  88...........IATIRDQSRCGSSWAFGAVEAMSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGHAIRIIGW-GVENKAPYWLIANSWNED--------------------WGENGY.. 301
52 -12.0001nb3_A mol:protein length:220 Cathepsin H  ali model follow..  15  14...........VSPVKNQGSCGSCWTFSTTGALE-TGKMLSLAEQQLVD---AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDT-TMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGHAVLAVGY-GEENGIPYWIVKNSWGPQ............................ 191
53 -11.9005ef4_A mol:protein length:385 Cysteine protease  ali model follow..  10  136...........VTDVKGQGGCGSCWAFAAVVALEGINAIRTGKLVKFSEQQLVDCDMTNAGCDGGLMEPAFTYVIKHGIDGRQNVPGLDEEALRKAVAHQ-PVATGIQLSGGDCGTEPNHGVGIVGYGENEKGIKFWTVKNSWGPT--------------------WGEKGY.. 314
54 -11.9002fo5_A mol:protein length:262 Cysteine proteinase EP-B 2  ali model follow..  13  16...........VTGVKDQGKCGSCWAFSTVVSVE-TGSLVSLSEQELID----DTADNDGCQGGLMDNAFEYIKNNGGLITEHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEHGVAVVGYGVAEDGKAYWTVKNSWGPS--------------------WGEQGY.. 199
55 -11.9001pci_A mol:protein length:322 PROCARICAIN  ali model follow..  11  119...........VTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGAVTAVGY-GKSGGKGYILIKNSWGTA--------------------WGEKGY.. 296
56 -11.9006ex8_A mol:protein length:217 Cysteine protease  ali model follow..  13  13...........VTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYDAIAAYLAENGPLAIAVDATSFMDYNGGDHGVLLVGY-NDASNPPYWIIKNSWSNM............................ 187
57 -11.9001khp_A mol:protein length:212 Papain  ali model follow..  14  13...........VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGHAVAAVGY-----GPNYILIKNSWGTG............................ 180
58 -11.9001bp4_A mol:protein length:212 PAPAIN  ali model follow..  14  13...........VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGHAVAAVGY-----GPNYILIKNSWGTG............................ 180
59 -11.9003ioq_A mol:protein length:213 CMS1MS2  ali model follow..  15  13...........VTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANSGIHLRVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGHAVAAVGY-----GNDYILIKNSWGTG............................ 180
60 -11.8004pi3_A mol:protein length:216 Cruzipain  ali model follow..  11  14...........VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAQIAAWLAVNGPVAVAVDASSWMTYTGGDHGVLLVGY-NDSAAVPYWIIKNSWTTQ............................ 188
61 -11.8005t6u_A mol:protein length:215 Cathepsin K  ali model follow..  14  13...........VTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGCRGYREIPVGNEKALKRAVARVGPISVSIDASLASDRDNVNHAVLVVGY-GTQKGSKHWIIKNSWGES............................ 187
62 -11.8003iut_A mol:protein length:221 Cruzipain  ali model follow..  11  13...........VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAQIAAWLAVNGPVAVAVDASSWMTYTGGDHGVLLVGY-NDGAAVPYWIIKNSWTTQ............................ 187
63 -11.7001ukf_A mol:protein length:188 Avirulence protein AVRPPH3  ali model follow..  12  10...............RDVNHNNICAGLSTEWLVMSSDGDAESRMDHLDYNGEGQSRGSERHQEAPFFTASTAVIEDAGFSLRREPKTVHGQTVAHDVAQSGRKHLLSLRFANV----QGHAIACS------CEGSQFKLFDPNLGEFQSSRSA..................... 159
64 -11.7006czk_A mol:protein length:335 Pro-cathepsin H  ali model follow..  13  129...........VSPVKNQGACGSCWTFSTTGALE-TGKMLSLAEQQLVDCAQDFNNHG---QGGLPSQAFEYILYNKGIMGEDT-TIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGHAVLAVGY-GEKNGIPYWIVKNSWGPQ--------------------WGMNGY.. 312
65 -11.6002bdz_A mol:protein length:214 Mexicain  ali model follow..  11  13...........VTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGHAVTAVGY-----GKTYLLLKNSWGPN............................ 180
66 -11.5005tdi_A mol:protein length:215 Cathepsin K  ali model follow..  12  13...........VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSNSDNLNHAVLAVGY-GIQKGNKHWIIKNSWGEN............................ 187
67 -11.5001vsn_A mol:protein length:215 Cathepsin K  ali model follow..  11  13...........VTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSSSDALNHAVLAVGY-GIQAGNKHWIIKNSWGES............................ 187
68 -11.5003h7d_A mol:protein length:215 Cathepsin K  ali model follow..  12  13...........VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSNSDNLNHAVLAVGY-GESKGNKHWIIKNSWGEN............................ 187
69 -11.5002f7d_A mol:protein length:215 Cathepsin K  ali model follow..  11  13...........VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSSSDNLNHAVLAVGY-GIQKGNKHWIIKNSWGES............................ 187
70 -11.0003tnx_A mol:protein length:363 Papain  ali model follow..  13  158...........VTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGHAVAAVGY-----GPNYILIRNSWGTG--------------------WGENGY.. 331
71 -10.9005z5o_A mol:protein length:335 Cathepsin K  ali model follow..  11  127...........VTPVKNQGQCGSSWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVATDASLTSNSDNLNHAVLAVGY-GIQKGNKHWIIKNSWGEN--------------------WGNKGY.. 307
72 -10.9003rvw_A mol:protein length:222 Peptidase 1  ali model follow..  15  22...........VTPIRMQGGCGSCWAFSGVAATE-RNQSLDLAEQELVD-------ASQHGCHGDTIPRGIEYIQHNGVVQESY-YPPNVNKIREALAQTHAIAVIIGIKDLDAYQPNYHAVNIVGY-SNAQGVDYWIVRNSWDTN--------------------WGDNGY.. 201
73 -10.8002fye_A mol:protein length:217 cathepsin S preproprotein  ali model follow..  15  13...........VTEVKYQGSCGACWAFSAVGALE-TGKLVSLSAQNLVDCSTKKYGNKGCNG-GFMTTAFQYIIDNKGIDSDAS-PYGREDVLKEAVANKGPVSVGVDYYEPSCTQNVNHGVLVVGY-GDLNGKEYWLVKNSWGHN............................ 189
74 -10.8001cjl_A mol:protein length:312 PROCATHEPSIN L  ali model follow..  12  105...........VTPVKNQGQCGSSWAFSATGALE-TGRLISLSEQNLVD---SGPEGNEGCNGGLMDYAFQYVQDNGGLDSEFVDIPKQEKALMKAVATVGPISVAIDAGHESSSEDMDHGVLVVGYSTESDGNKYWLVKNSWGEE--------------------WGMGGY.. 290
75 -10.8001cs8_A mol:protein length:316 HUMAN PROCATHEPSIN L  ali model follow..  13  109...........VTPVKNQGQCGSCWAFSATGALE-TGRLISLSEQNLVD---SGPQGNEGCNGGLMDYAFQYVQDNGGLDSEFVDIPKQEKALMKAVATVGPISVAIDAGHESSSEDMDHGVLVVGYSTESDNNKYWLVKNSWGEE--------------------WGMGGY.. 294
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.