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Query: 1e5r_A mol:protein length:290 PROLINE OXIDASE, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRSHILGKIELDQTRLAPDLAYLAAVPTVEEEYDEFSNGFWKHVPLWNASGDSEDRLYRDLKDAAAQPTAHVEHVPYLKEIVTTVFDGTHLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCVDFAFDGPFDEKEIFADATLYAPGSTPDLPERRPFTAEHRRRILSLGQVIERENFRDILFLLSKVHYKYDVHPSETYDWLIEISKQAGDEKMVVKAEQIRDFAVEARALSERFSLTSWLast
1 -112.0001e5r_A mol:protein length:290 PROLINE OXIDASE  ali model  100  1MRSHILGKIELDQTRLAPDLAYLAAVPTVEEEYDEFSNGFWKHVPLWNASGDSEDRLYRDLKDAAAQPTAHVEHVPYLKEIVTTVFDGTHLQMARSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCVDFAFDGPFDEKEIFADATLYAPGSTPDLPERRPFTAEHRRRILSLGQVIERENFRDILFLLSKVHYKYDVHPSETYDWLIEISKQAGDEKMVVKAEQIRDFAVEARALSERFSLTSW 290
2 -86.9004p7w_A mol:protein length:292 L-proline cis-4-hydroxylase  ali model follow..  32  13ATTRILGVVQLDQRRLTDDLAVLAKSNFSSE-YSDFACGRWEFCMLRNQSGKQEEQRVVV-HETPALATPLGQSLPYLNELLDNHFDDSIRYARIIRISENACIIPHRDYLEL---EGKFIRVHLVLDTNEKCSNTEENNIFHMGRGEIWFLDASLPHSAGCFSPTPRLHLVVDIEGTRSLEEVA---INVEQPSARNATVDTRKEWTDETLESVLGFSEIISEANYREIVAILAKLHFFHKVHCVDMYGWLKEICRRRGEPALIEKANSLERFYLIDRAAGEVM---TY 292
3 -44.7005apa_A mol:protein length:220 ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE  ali model follow..  12  45.......SLERNWKLIRDEGLAVMDKAFLPEDENLREKGDWSQFTLWQQGRRNE---------------NACKGAPKTCTLLEKFPETRRGQIKYSIMHPGTHVWPHTG------PTNCRLRMHLGLVIPEGCKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI................................................................................................... 214
4 -35.8005jqy_A mol:protein length:429 Aspartyl/asparaginyl beta-hydroxylase  ali model follow..  12  260.......SLERNWKLIRDEGLAVMDKA-LPEDENLREKGDWSQFTLWQQG---------------RRNENACKGAPKTCTLLEKFPETTGCRIKYSIMHPGTHVWPHT------GPTNCRLRMHLGLVIPKECKIRCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVDVWHPELTPQQRRSLPAI................................................................................................... 429
5 -19.1003lag_A mol:protein length:98 uncharacterized protein RPA4178  ali model follow..  13  5...........................................................................AAKSEIQ---IDNDEVRVTEWRLPPGSATGHHTHGMDY---------VVVPMADGEMTIVAPDGTRAQLKTGRSYARKAGVQHDVRNESTAEIVFLEIELKAGS............................................................................................................... 98
6 -18.4005j7m_A mol:protein length:123 Cupin 2 conserved barrel domain protein  ali model follow..  10  26................................................................................EQYGLGTAMPFQAMWYSVPPGDESPIDQHPEL-----------ELSIVVAGTAHVTVGDTVHEVPHGNAFLLNSLEAHVVQNRSADEVLTVFSAYWYPEAATA........................................................................................................... 117
7 -18.2005wsd_A mol:protein length:118 Uncharacterized protein tm1459  ali model follow..  14  27.............................................................................RKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWE-----------HEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL..................................................................................................................... 111
8 -18.2002fqp_A mol:protein length:97 hypothetical protein BP2299  ali model follow..  14  10..................................................................................TVQIDNERVKVTEWRFPPGGETGWHRHSMDY---------VVVPMTTGPLLLETPEGSVSQLTRGVSYTRPEGVEHNVINPSDTEFVFVEIEIKAA................................................................................................................ 97
9 -18.2001o4t_A mol:protein length:133 putative oxalate decarboxylase  ali model follow..  15  41................................................................................LSKEAMHNKARLFARMKLPPGSSVGLHKHEGEF----------EIYYILLGEGVFHDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV..................................................................................................................... 123
10 -18.2005tfz_A mol:protein length:150 dimethylsulfoniopropionate lyase DddK  ali model follow..  7  44................................................................................IDADFDGSSGLSLGFAEIAPGGDLTLHYHSPA-----------EIYVVTNGKGILNKSGKLETIKKGDVVYIAGNAEHALKNNGKETLEFYWI..................................................................................................................... 125
11 -17.7001vj2_A mol:protein length:126 novel manganese-containing cupin TM1459  ali model follow..  14  29.............................................................................RKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWE-----------HEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCL..................................................................................................................... 113
12 -17.5001v70_A mol:protein length:105 probable antibiotics synthesis protein  ali model follow..  15  18................................................................................AKIPVFQSERMLYDLYALLPGQAQKVHVHEGS-----------KVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVV..................................................................................................................... 100
13 -17.4004mv2_A mol:protein length:128 plu4264  ali model follow..  9  21.............................................................................GSRLLPWEGLNTPFGGAWCIVRPETKSFRHSHNEY-----------ELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTI..................................................................................................................... 105
14 -17.1003jzv_A mol:protein length:166 uncharacterized protein Rru_A2000  ali model follow..  10  49......................................................................................NGLTGELRYFEVGPGGHSTLERHQHA-----------HGVMILKGRGHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM..................................................................................................................... 124
15 -17.0004e2g_A mol:protein length:126 Cupin 2 conserved barrel domain protein  ali model follow..  15  1..................................................SNAMSTGEQREFAPAFYDLTEVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHPHE-----------QAGVMLEGTLELTIGEETRVLRPGMAYTIPGGVRHRARTFEDGC---LVLDIFSPPREDYARMAEDA.................................................................................................... 126
16 -16.9003ibm_A mol:protein length:167 Cupin 2, conserved barrel domain protein  ali model follow..  8  48..................................................................................PAGQEAPAFETRYFEVEPGGYTTLERHEHT-----------HVVMVVRGHAEVVLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPAVARRIRTE.................................................................................... 160
17 -16.9003kgz_A mol:protein length:156 Cupin 2 conserved barrel domain protein  ali model follow..  13  44..........................................................................................CEWRYFEVDEGGYSTLERHAHV-----------HAVMIHRGHGQCLVGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV..................................................................................................................... 115
18 -16.8004rd7_A mol:protein length:127 Cupin 2 conserved barrel domain protein  ali model follow..  10  21............................................................................RAQRLMPWPTVNAPFEGSWCVVAPGVSSGEHGHHEY-----------EIWIAMTGRAELVSDGARRPFHAGDVVYLPPGSRHQVVNPTDEQFQMYAV..................................................................................................................... 106
19 -16.8002b8m_A mol:protein length:117 Hypothetical protein MJ0764  ali model follow..  9  16...............................................................................KVVEKLVNTEHVQINHIVLPRGEQMPKHYSNSYVH----------LIIIKGEMTLTLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV..................................................................................................................... 99
20 -16.6003cew_A mol:protein length:125 Uncharacterized cupin protein  ali model follow..  13  14..............................................................................RVELHDSLALTGAEVSINHLPAGAGVPFHKQNEEIY------------GILSGKGFITIDGEKIELQAGDWLRIAPDGKRQISAASDSPIGFLCI..................................................................................................................... 99
21 -16.5005uqp_A mol:protein length:125 Cupin  ali model follow..  11  46......................................................................................SVAPFTLAHIRVPGGVTTAEDHHEVR-----------EIWLVQSGSGILTLDGVRSRVRAGDTLYYESYRRHQLHNDGDSPVEIVSI..................................................................................................................... 121
22 -16.2001yhf_A mol:protein length:115 hypothetical protein SPy1581  ali model follow..  16  32..................................................................................RTLVQRQDLGITVFSLDKGQEIGRHSSPGD-----------AMVTILSGLAEITIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLVVV..................................................................................................................... 111
23 -16.1002ozj_A mol:protein length:114 Cupin 2, conserved barrel  ali model follow..  12  30..................................................................................MALAQSDRVQISLFSFADGESVSEEEYFGD-----------TLYLILQGEAVITFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKMLQITL..................................................................................................................... 109
24 -16.1001lr5_A mol:protein length:163 Auxin binding protein 1  ali model follow..  6  31................................................................................AGALNHGMKEVEVWLQTISPGQRTPIHRHSCE-----------EVFTVLKGKGTLLMGSSEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLVIISRPPAKIFLYDDWSMPHTAAVLKFPFVWDEDCFEAAKEQL........................................................................... 163
25 -15.9002pfw_A mol:protein length:116 Cupin 2, conserved barrel domain protein  ali model follow..  13  26..................................................................................QMLGFNHELMAVKIWFDKGAEGYVHAHRHS-----------QVSYVVEGEFHVNVDGVIKVLTAGDSFFVPPHVDHGAVCPTGG----ILIDTFSPAREDFVEGLS...................................................................................................... 116
26 -15.9003fjs_A mol:protein length:114 uncharacterized protein with RmlC-like cupin fold  ali model follow..  14  28..................................................................................AALFKEHRLEVMRMVLPAGKQVGSHSVAGPS-----------TIQCLEGEVEIGVDGAQRRLHQGDLLYLGAGAAHDVNAITNTS---LLVTVVLVDR.............................................................................................................. 111
27 -15.7003h8u_A mol:protein length:125 uncharacterized conserved protein with double-stranded beta-helix domain  ali model follow..  15  29................................................................................IRSVVLETNDSVVVVWHAHPGQEIASHV---------------HWTVISGEAEYHQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFVSV..................................................................................................................... 112
28 -15.6005j4g_A mol:protein length:107 Uncharacterized protein  ali model follow..  15  1.................................................................MEVVHFLEGVCFEKLHIEVLNENSSHKEIRICMPKGAVMDKHKAPGAI-----------SVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLS..................................................................................................................... 97
29 -15.6005j4f_A mol:protein length:119 Uncharacterized protein  ali model follow..  15  32..................................................................................EVLNENSSHKEIRICMPKGAVMDKHKAPGAI-----------SVQVLEGKIVFEVGDEKIEMPKGALISLEAQVLHRLDALENSVIRLSLS..................................................................................................................... 111
30 -15.4005fq0_A mol:protein length:114 KDGF  ali model follow..  15  24..................................................................................KIVAHTPDLMAVCVKFDRGAVGTPHQHERH-----------QIGYVVQGAFEVELEGEKRRLSPGDAFVAPHHTMHGAVALEPDSLVIDLFSPRRDDMLKS........................................................................................................... 114
31 -15.4003lwc_A mol:protein length:119 Uncharacterized protein  ali model follow..  11  1..................................................GKTMKMRKFTIADASLERSPGQEADISVGNLVDERHGGP-ITIGYGRYAPGQSLTETMAVDD------------VMIVLEGRLSVSTDGETVTAGPGEIVYMPKGETVTIRSHEEGALTAYVT..................................................................................................................... 110
32 -15.3003rns_A mol:protein length:227 Cupin 2 conserved barrel domain protein  ali model follow..  15  64FNGNGEIFIENNKKTISN--DFLEITANHNYSIEARDNLKLIEIGEKIGDGNMENKTLKMLESASAFNLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPHKAPGD-----------ALVTVLDGEGKYYVDGKPFIVKKGESAVLPANIPHAVEAETENFKMLLIL..................................................................................................................... 224
33 -15.1003l2h_A mol:protein length:162 Putative sugar phosphate isomerase  ali model follow..  13  32............................................................................RVNKSLGDAVGLRHMGIHLIQIEPGKESTEHHYEEEAV------------YVLSGKGTLTMENDQYPIAPGDFVGFPHAAAHSISNDGTETLVCLVI..................................................................................................................... 120
34 -15.1003h7j_A mol:protein length:243 Bacilysin biosynthesis protein bacB  ali model follow..  12  61VSGELMMTVGDVTRKMTALESAYIAPPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLPGM-----EVTFFVEDWVEIMLAKIPGNGGEMPFHKHRNE-----------QIGICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSININRAKAKKMKA........................................................................................................... 233
35 -15.1006b8w_A mol:protein length:95 XRE family transcriptional regulator  ali model follow..  11  3............................................................................MVVKPLFPWDETLKFDHFSIILAPGAL-TPHEAGVI-----------EHVVVISGELEMKIDGEWRTLYPDQGVRFAGDKPHAYRNSSSRPVHFHSL..................................................................................................................... 90
36 -15.0002f4p_A mol:protein length:147 hypothetical protein TM1010  ali model follow..  10  28............................................................................WVKMLVTDENGVFNTQVYDVVFEPGARTHWHS---------------HLIVTRGKGFYQERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHIGI..................................................................................................................... 114
37 -15.0003ht1_A mol:protein length:145 RemF protein  ali model follow..  14  26.............................................................................HRKLIDTPDGADRFVLTEFEVSPNGSTPPHFHEWEHE--------IYV-LEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTRFLVVAPCERPPVRNVFLSEDPYEYTQMPEYTSLLE....................................................................................... 143
38 -14.9004uxa_A mol:protein length:131 CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN  ali model follow..  9  25..............................................................................IDPLFQAPDPALVAGHSTTFEPGARTAWHT---------------HLIVTAGCGWAQREGGAVEEIHPGDVVWFSPGEKHWHGAAPTTAMTHLAI..................................................................................................................... 109
39 -14.8005fpx_A mol:protein length:113 PECTIN DEGRADATION PROTEIN  ali model follow..  14  25..................................................................................KVMTWSDDLMMVCVHFDKGAIGVAHKHDIH-----------QIAYVAAGSFEVEIEGQKRILKAGDAYRAVKNEMHGAVSLEDNSILIDTFNPKRDDFL............................................................................................................. 113
40 -14.7003i7d_A mol:protein length:163 sugar phosphate isomerase  ali model follow..  13  29............................................................................RSSLRLGDAGGLSQFGVNLVRLEPGAKSSLHMEQDEFV------------MVTEGALVLVDDQGEHPMVPGDCAAFGDPNGHQFVNRTDAPATFLVV..................................................................................................................... 118
41 -14.5002q30_A mol:protein length:110 Uncharacterized protein  ali model follow..  13  25..................................................................................ELVHESENFKIVSFTFKAGQELPVHSHNIEG--------ELNIVVLEGEGEFVGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLVTIA..................................................................................................................... 107
42 -14.5003h50_A mol:protein length:114 Tetracenomycin polyketide synthesis protein  ali model follow..  9  4........................................................................YATLELNNAFKVLFSLRQVQAAEMVIAPGDREGGHRGADQWL------------FVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNF..................................................................................................................... 96
43 -14.1004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  17  31...........AIARLKAGAERLITRFTDEGLRSDDYWNF-------EGDERPVLYRVHNLEKQDWAPERDLLHREELAQLAAAFVDGPVVPTAYALVLKAAEVPWHRDRVNVGPRTVCNLSICLDAGPHNGCLEAVPGSPVPVSQGDVVVHDVRLVHSGPNANGSWRRTIVIEYADPA............................................................................................................... 218
44 -14.1005cu1_A mol:protein length:212 DMSP lyase  ali model follow..  10  1MSSGSMTQTDPAFQNLLAEFQALHAREPALAGFVALPDS--TPQPVTPVRIPPAALMESDPDLTTTAYAAIRDAFIAAGAVAGGPFASDSLAAYVVYMPAGLYYPFHQHPAE-----------EIYFILAGEAEFLMEGHPPRLGPGDHVFHPSGHPHATRTYDRPFMALVLW..................................................................................................................... 189
45 -14.1005jso_A mol:protein length:201 Dimethlysulfonioproprionate lyase DddQ  ali model follow..  12  94..............................................................................FELFTGHFHSTQLRGYVAYWGAGLDYDWHSHQAE---------ELYLTL--AGGAVFKVDGERAFVGAEGTRLHASWQSHAMSTGDQP----LTFVLWRGEGLNALPRMDAA.................................................................................................... 193
46 -14.0005onm_A mol:protein length:138 L-ectoine synthase  ali model follow..  10  22............................................................................NSRRLLLT--DGMGFSLNDTLIKAGTETLIWYKNHVEAVY----------CIEGEGEIEVIGGETYPITPGMMYALDGHEKHYLRARSQMRMVCVF...................................................................................................................... 106
47 -13.9005bxx_A mol:protein length:146 L-ectoine synthase  ali model follow..  15  22............................................................................ASARMLLK--DGMGFSFHVTTLFAGSELRMHY---------QNHLEAVLVLKGTGTIEDLATGEVHALRPGVMYALDDHDRHIVRPETDILTACVF...................................................................................................................... 107
48 -13.9004h7l_A mol:protein length:157 uncharacterized protein  ali model follow..  12  47..........................................................................................VSVHYTQITKAARTHYHREHQE----------IYVVLDHAAHATIELNGQSYPLTKLLAISIPPLVRHRIVGEAT----IINIVSPPFDPADEWFDSSDMNCDEMNADMNTADTSSALPMEIHHV........................................................................... 157
49 -13.8002d40_A mol:protein length:354 putative gentisate 1,2-dioxygenase  ali model follow..  8  1MGSSMTDNNQNSREQFYQHISGQNLTPWESLHHLVPKTPNANCAPAYWNYQEIRPLLLESGGLIGAKEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRF----------IVEGKGAFTAVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLDGEEQQPVTRKEGDYLPRYAANMLPLRHQTGNSSPIFNYRYDRSREVLHDLTRLGDADEWDGYKMRYVNPVTGGYPMPSMGAFLQLLPKGFASRVARTTDSTIYHVVEG-KDIFVVPTW 315
50 -13.7005onn_A mol:protein length:138 L-ectoine synthase  ali model follow..  8  35..........................................................................................FSLNDTLIKAGTETLIWYKNHVEAVY----------CIEGEGEIEVVGGETYPITPGMMYALDGHEKHYLRARSQMRMVCVF...................................................................................................................... 106
51 -13.7005ono_A mol:protein length:138 L-ectoine synthase  ali model follow..  8  35..........................................................................................FSLNDTLIKAGTETLIWYKNHVEAVY----------CIEGEGEIEVVGGETYPITPGMMYALDGHEKHYLRARSQMRMVCVF...................................................................................................................... 106
52 -13.4005u93_A mol:protein length:172 HTH-type transcriptional activator RhaR  ali model follow..  12  10..................................................................................DDFFASDQQAVAVADRYPQDVFAEHTH-------------CELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCFNASAGQPHWRLGSMGMAQARQVIGQLEHESSQHVPFANEMAELL-------FGQLVMLLNRHRYTSDSLPPT........................................... 172
53 -13.3004e2q_A mol:protein length:266 Ureidoglycine aminohydrolase  ali model follow..  6  172............................................................................FELRKLLPMSVAYDFNIHTMDFQPGEFLNVHYNQ-------------HGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL............................................................................................................. 266
54 -13.2002phd_A mol:protein length:368 Gentisate 1,2-dioxygenase  ali model follow..  9  1MQNEKLDHESVTQAMQPKDTPELRA--LYKSFEEESIIPLWTQLGVWKWSTLLRLARKSGELVPVGRGGERRALGLANPGLGGNAYISPTMWAGIQYLGPRETAPEHRHSQNAFRF----------VVEGEGVWTVVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWIDG..................................................................................................................... 175
55 -13.1001sef_A mol:protein length:274 conserved hypothetical protein  ali model follow..  8  91IDGRLRVSDGQETHELEAGYAYFTPEMKMYLANAQEADTEVFLYKKRYQPLAGHQPYKVVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQ-----------HGAYLISGQGMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMYVY..................................................................................................................... 254
56 -13.1003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  10  1MGSDKIENLYFQGMLIEQEVSHLREQLDARRWIDGNQTSGAMATTRKR-----NQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGMIRTATLFLSEPEN-----GQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAF-DEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL........................................................................ 237
57 -13.1001sfn_A mol:protein length:246 conserved hypothetical protein  ali model follow..  5  75LSGEVDVAVGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPAEVHYME-----------HGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNRHPLG............................................................................................................ 246
58 -13.0001sq4_A mol:protein length:278 Glyoxylate-induced Protein  ali model follow..  6  97VEGELSLTLQGQVHAMQPG-GYAFIPPGADYKVRNTTGQHTRFHWIRKHYQKVDGVPLPEAFVTNEQDIQPLVM--STTRFVDMSDMRHDMHVNIVNFEPGGVIPFAETHVM-----------HGLYVLEGKAVYRLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYLLY..................................................................................................................... 263
59 -12.9002a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  11  47...........DIQRFRNEFEKICRKEVKPLGLTVMRD-------VTISKSEYAPSEKMITKVQDFQEDKELFRYPEILKYVECFTGPNIMHTMLINKPPGKKTSRHPLHQDLHRPSDLIVCAWTAMSRNNGCLVVLPGTHLVMEKGDTVFFHPLLIHSGQNKTQGFRKAISCHFASAD............................................................................................................... 256
60 -12.8005ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  13  49...........EVAEYLAEARRLLAHEESVRWGSGAGTVMDYVADAQLGSDTMRR----------------LATHPRIAALAEYLAGSPLRLFKLEVLLKSVPTAPHHDAFAFFSTAGTALTAWVALVVERGCMTFVPGSTVPLRAGDCTFHHARTVHSA-NSTDEPRLSTSAVYMDAT............................................................................................................... 240
61 -12.8004bif_A mol:protein length:156 CUPIN 2 CONSERVED BARREL DOMAIN PROTEIN  ali model follow..  10  44..............................................................................IDPLFQAPDPALVAGASVTFEPGARTAWHT---------------HLIVTAGCGWAQREGGAVEEIHPGDVVWFSPGEKHWHGAAPTTAMTHLAI..................................................................................................................... 128
62 -12.7002opw_A mol:protein length:291 PHYHD1 protein  ali model follow..  15  121...........................................................................FKVQTLARSLGLQMPVVVQSMYIFKGGEVSPHQDASFLTEPLGRVLGVWIAVTLENGCLWFIPGSPTPVQRGALVLIHGEVVHSKQNLSDRSRQAYTFHLMEAS............................................................................................................... 268
63 -12.7004xab_A mol:protein length:252 EvdO2  ali model follow..  11  34...........EVAWLRQAYDRLFVRRATPGAEDFYDIAGQRDREGPPLLPQIIKPEKYVPELLDSPHFARCRSI--ASAFLDMAEEELEFYGHAILKPPGAPTPWHQDEAYMD-WRRRGLSIWTTLTVESGCLHYLPGGACPLAPGGAVVHDFRTPHAGPNLTDQPRRAYVLVFMSAP............................................................................................................... 237
64 -12.6001fi2_A mol:protein length:201 OXALATE OXIDASE  ali model follow..  12  61.......................................................................VAEWPGTNTL---------VSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRV--VRAGETFVIPRGLMHFQFNVGKTEAYMVVS-----------------NSQNPGIVFVPLTLFGSDPPIPTPVLTKALRVEAGVVELLKSKF........................................................ 197
65 -12.5002o8q_A mol:protein length:134 Hypothetical protein  ali model follow..  8  1..................................................GMKLQTTIQHEPKDGSGFDRGLREFFEYRDTGVNEATGGMFGAHVIRAIPGKEAKPHTVGFQLFYVLRGWVEFEYE-----------DIGAVMLEAGGSAFQPPGVRHRELRHSDDLEV---LEIVSPAGFATSVVDLEEARKP................................................................................................ 134
66 -12.5002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  11  1MSLAQIKSLALDPAEFAASCYSIAEDDDAGQEWCERE----------GYPGYTSYASLTDLPWRFPIFADLVKSLAHVAAFAEDLKALRLEDIWINILPEGGVHGSHIHPHSVIS-------TYVAMPEGTSALKLEDPRSVAPKVGDVLLWESWLRHEVPNMAEEDRISVSFNYAWGE............................................................................................................... 209
67 -12.4002opk_A mol:protein length:112 Hypothetical protein  ali model follow..  16  20...............................................................................EIFQPLLERKGLKIERIISNGQAS-------PPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGDWLHVPAHCRHRVAWTDGGEPTVWL...................................................................................................................... 105
68 -12.4001rc6_A mol:protein length:261 Hypothetical protein ylbA  ali model follow..  9  88ISGNITAKAEGKTFALSEGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQ-----------HGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIY..................................................................................................................... 251
69 -12.2003bu7_A mol:protein length:394 Gentisate 1,2-dioxygenase  ali model follow..  7  114.......................................................................................CGWLFSGIQTMKAGERAGAHR---------------HAAIMEGSGAYTIVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQD..................................................................................................................... 189
70 -12.1005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  13  50...........IIAKISDDVNRVMDKATIGAKKGEQTHII---------NMHNRTIHMGDLVLTSKTYRDELLNLPFAHEVLEKVFKKDSGDYWLLNMLPGAEAQRHRDDYLYPVSQHMMINITFPLRHDNGGTLLLPKSAAEMQVGDALIFTGKCVHGG-NRSDKPRIGLALAAQPG................................................................................................................ 241
71 -12.1003cjx_A mol:protein length:165 Protein of unknown function with a cupin-like fold  ali model follow..  7  1................................................GATITHQEKLLTVDTTAHPFLKALGGHEGTDIFPLFMDPYNGLMVMRASFAPGLTLPLHF---------------HTGMYTISGCWYYTEYPGQKQTAGCYLYEPGGSIHQFNTPRDNEGQTEVI..................................................................................................................... 113
72 -12.0003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  10  21.........AIDAEEMESSCYAIAEDDEAGQGWCEEN----------GYPGYTSYASLTDLPWRFPIFADLVKSLAHVAAFAEDLRALELEDLWINILPEGGSHASHIHPHSVIS-------TYVSMPGGTSALKLEDPRYVTPAVGDVLLWESWLRHEVPNMSEDDRISVSFNYRWAE............................................................................................................... 205
73 -12.0004b29_A mol:protein length:217 DIMETHYLSULFONIOPROPIONATE LYASE  ali model follow..  14  112..............................................................................FELASGHFLTQSLRVTVGYWGPGLDYGWHEHLPE---------ELYSVV-SGRALFHLRNAPDLMLEPGQTRFHPANAPHAMTTLTDP----LTLVLWRGAGLGDDPRMSQ..................................................................................................... 211
74 -12.0004xbz_A mol:protein length:334 EvdO1  ali model follow..  11  62...........ELADVQEAGRALIDRAWSTRSMEDTVWT-------LEPDQPGAAPVRIEYVVDKARPIAMLAGHPLLLRIMEQLVGPNLISMVFKTPAGAPRLAWHRDNAVGVTGAGRVIDAGIYLAPEDNCVWCIPESPAVMQPGDLLLHNILTLHGAPAVVGKQRRVIYFEYRPAE............................................................................................................... 259
75 -11.9002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  11  44...........LVKTVAEQMREGLVALGAADPHATLEELTIDSFESVDEVAMHDYVKYDAFWNN-----------PSTIKVFEQVFGEPVFVFLSTTIRFHYLTPFHQDGF-YIGPNQDFRTFWIPLTRESGGVALADGSHSPMEPGDILLFHAHMCHSIPNLSKDPRMRMSMDT................................................................................................................... 248
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.