Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: 1ffk_Y mol:protein length:49 RIBOSOMAL PROTEIN L39E, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .
# Score Template Links and tools%idFirst GKKSKATKKRKAKLDNQNSRVPAYVMLKTDREVQRNHKRRHWRRNDTDELast
1 -39.2001ffk_Y mol:protein length:49 RIBOSOMAL PROTEIN L39E  ali model  100  1GKKSKATKKRKAKLDNQNSRVPAYVMLKTDREVQRNHKRRHWRRNDTDE 49
2 -39.2005xy3_l mol:protein length:51 60S ribosomal protein L39, putative  ali model follow..  29  3AHKTLRTKRILCKAMKVNRPMPQFIRQMTGVRHIRNPLTRHWRRRKMN. 50
3 -39.0003j79_e mol:protein length:51 60S ribosomal protein eL39  ali model follow..  39  3SIKRFRLKQRLGKCRRQNRPVPHWYRLKKDTKIRYNTKRRHWRRTKLG. 50
4 -39.0001s72_2 mol:protein length:50 50S ribosomal protein L39e  ali model follow..  95  2GKKSKATKKRLAKLDNQNSRVPAWVMLKTDREVQRNHKRRHWRRNDTDE 50
5 -38.9002ww9_O mol:protein length:51 60S RIBOSOMAL PROTEIN L39  ali model follow..  35  3AQKSFRIKQKMAKAKKQNRPLPQWIRLRTNNTIRYNAKRRNWRRTKMN. 50
6 -38.9005lzs_l mol:protein length:51 Uncharacterized protein  ali model follow..  35  3SHKTFRIKRFLAKKQKQNRPIPQWIWMKTGNKIRYNSKRRHWRRTKLG. 50
7 -38.8003j7o_l mol:protein length:51 Ribosomal protein eL39  ali model follow..  35  3SHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG. 50
8 -38.7005xxb_k mol:protein length:51 Ribosomal protein eL39  ali model follow..  31  3SIKGLSLKKHLGRKQKQNRPIPPWIRMRTGSKIRYNAKRRHWRRTKLG. 50
9 -38.4003jcs_l mol:protein length:51 ribosomal protein L39e  ali model follow..  43  3RFKPLAVKKKYAKKMNQNKPVPYWIRLRTGNRIKWNEKRRHWRRTKLN. 50
10 -38.1005t5h_q mol:protein length:50 Ribosomal protein L39  ali model follow..  41  2RFKPLAIKKKYAKKLKQNRPVPYWIRLRTGNRIKWNEKRRHWRRTKLH. 49
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;