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Query: 1fmd_4 mol:protein length:85 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGALLALast
1 -54.1001fmd_4 mol:protein length:85 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)  ali model  100  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGALLA 85
2 -50.9001bbt_4 mol:protein length:85 FOOT-AND-MOUTH DISEASE VIRUS (SUBUNIT VP4)  ali model follow..  97  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGNDAISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGALLA 85
3 -49.5001zba_4 mol:protein length:85 Coat protein VP4  ali model follow..  96  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMSTQLGDNTISGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFTGLFGALLA 85
4 -48.8005ac9_4 mol:protein length:85 VP4  ali model follow..  98  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNATSGGSNEGSTDTTSTHTTNTQNNDWFSKLASSAFSGLFGALLA 85
5 -48.8005aca_4 mol:protein length:85 VP4  ali model follow..  94  1GAGHSSPVTGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTNNTQNNDWFSKLAQSAISGLFGALLA 85
6 -47.8002wzr_4 mol:protein length:85 POLYPROTEIN  ali model follow..  96  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSTHTNNTQNNDWFSKLAQSAFSGLVGALLA 85
7 -47.5005ne4_4 mol:protein length:85 O PanAsia VP4  ali model follow..  97  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSNHTTNTQNDDWFSKLASSAFSGLFGALLA 85
8 -46.9005ned_D mol:protein length:85 O PanAsia VP4  ali model follow..  98  1GAGQSSPATGSQNQSGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSTDTTSNHTTNTQNNDWFSKLASSAFSGLFGALLA 85
9 -42.7002wff_4 mol:protein length:80 P1  ali model follow..  46  1GAGTSTPTTGNQNMSGNSGSIVQNFYMQQYQNSIDADLGDNVISPEGQGSNTSSSTSSSQSSGLGGWFSSLLNLGTKLL...... 79
10 -33.9005nem_4 mol:protein length:70 O PanAsia VP4  ali model follow..  90  1..............SGNTGSIINNYYMQQYQNSMDTQLGDNAISGGSNEGSLTYFPHTT-NTQNNDWFSKLASSAFSGLFGALLA 70
11 -33.5001mec_4 mol:protein length:70 MENGO VIRUS COAT PROTEIN (SUBUNIT VP1)  ali model follow..  32  1.GNSTSSDKNNSSSEGNEGVIINNFYSNQYQNSIDLSANATGSDPPKTYG................................... 49
12 -32.3003cji_D mol:protein length:71 Polyprotein  ali model follow..  25  1.GNVQTTSKNDFDSRGNNGNMTFNYYANTYQNSVDFSTSSSASGAGPGNSRGG................................ 52
13 -32.3001tme_4 mol:protein length:71 THEILER`S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4)  ali model follow..  31  1.GNASSSDKSNSQSSGNEGVIINNFYSNQYQNSIDLSASGGNAGDAPQNNGQLSN.............................. 54
14 -26.7001pov_0 mol:protein length:340 POLIOVIRUS NATIVE EMPTY CAPSID (TYPE 1)  ali model follow..  17  1GAQVSSQKVGAHENSAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLNSPNIEACGYSDRVLQLTLG 87
15 -23.8001tmf_4 mol:protein length:45 THEILER`S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4)  ali model follow..  41  1............NESGNEGVIINNFYSNQYQNSIDLSASGGNAGDAPQTNG.................................. 39
16 -20.1004gh4_D mol:protein length:45 capsid protein VP4  ali model follow..  97  1..............SGNTGSIINNYYMQQYQNSMDTQ--------------------------LNDWFSKLASSAFSGLFGALLA 45
17 -19.6003j91_0 mol:protein length:323 VP0  ali model follow..  18  2GSQVSTQRSGSNSNSATEGSTINYTTINYYKDSYAATAGKQSLKQDPDKFANPVKDIFTEMAAPLKSPSAEACGYSDRVAQL... 85
18 -18.7005jzg_C mol:protein length:331 Capsid protein VP0  ali model follow..  22  1GAQVSRQNNGTNGVTASNGSVIKYFNINYYKDSASSGLSRQDFSQDPSK.................................... 51
19 -17.4005c8c_B mol:protein length:323 VP0  ali model follow..  17  2GSQVSTQRSGSNSNSASEGSTINYTTINYYKDAYAASAGRQDMSQDPKKFTDPVMDVIHEMAPPLKSPSAEACGYSDRVAQL... 85
20 -15.9005xs5_B mol:protein length:325 Genome polyprotein  ali model follow..  17  2GAQVSTQKSGSTRNVATEGSTINFTNINYYKDSYAASASRQDFAQDPAKFTRPVLDTIREVAAPLQSPSVEACGYSDRVAQL... 85
21 -13.9005yhq_B mol:protein length:325 capsid protein VP0  ali model follow..  20  2GAQVSAQKSGTTGNIATEGSTINFTNINYYKDSYAASASRQDFTQDPTK.................................... 52
22 -10.5001dgi_4 mol:protein length:63 VP4  ali model follow..  30  2GAQVSSQKVGAHENSSTINYTTINYYRDSASNA.................................................... 34
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.