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Query: 1fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MALSTATKAATDALAANRAPTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEANYPGWYDHYGKIYEEWRARGCEDPSSGFIPLMWFIENNHPIYIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWLAEPERYECQNIFEQYEGRELSEVIAELHGLRSDGKTLIAQPHVRGDKLWTLDDIKRLNCVFKNPVKAFNLast
1 -160.0001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model  100  1MALSTATKAATDALAANRAPTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMANETKEQFKLIAKEYARMEAVKDERQFGSLQDALTRLNAGVRVHPKWNETMKVVSNFLEVGEYNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEANYPGWYDHYGKIYEEWRARGCEDPSSGFIPLMWFIENNHPIYIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWLAEPERYECQNIFEQYEGRELSEVIAELHGLRSDGKTLIAQPHVRGDKLWTLDDIKRLNCVFKNPVKAFN 527
2 -141.0001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  80  10...ATNRAPVG-----------VEPQEVHKWLQSFNWDFKENRTKYPTKYHMANETKEQFKVIAKEYARMEAAKDERQFGTLLDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKFLNTDLNNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAYWAHHDLALAAYAMWPLGFARLALPDEEDQAWFEANYPGWADHYGKIFNEWKKLGYEDPKSGFIPYQWLLANGHDVYIDRVSQVPFIPSLAKGTGSLRVHEFNGKKHSLTDDWGERQWLIEPERYECHNVFEQYEGRELSEVIAEGHGVRSDGKTLIAQPHTRGDNLWTLEDIKRAGCVFPDPLAKF. 521
3 -112.0003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  19  1MAMRKDWYELTRATN-------------------WTPSYVTEEQLFPIPLEKWESYDEPYKTSYPEYVSIQREKDAGAYSVK-AALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDW--AWRAYHSNEWAAIAAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIEN-GKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDR--SQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSYHMGVWYWRTTAWWPAAGVTPEERDWLEEKYPGWNKRWGRCWDVITENVLNDRMDLVSP-------ETLPSVCNMSQIPVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQQDPVQYQNHNIVDRFLAGQIQPMTLELKYMGFQSIEEMGKDAH--DFAWADKCKPAMKKS......... 499
4 -112.0001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  20  1MS-REDWYDLTRTTN-------------------WTPKYVTENELFPISMEAWEKYDEPYKITYPEYVSIQREKDSGAY-SIKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDW--AHKAIHTNEWAAIAARSFFDDMMMTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVEN-GKKDEAQQMVDVAIWRSWKLFSVLTGPIMDYYTPLE--SRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWYWRPTVWWPAAGVSPEEREWLEEKYPGWNDTWGQCWDVITDNLVNGKPELTVP-------ETLPTICNMCNLPIAHTPGNKWNVKYQLEYEGRLYHFGSEADRWCFQIDPERYKNHNLVDRFLKGEIQPADLAGAL-------MSLEPGVMGDDEWVKAYQKKTNAA......... 498
5 -106.0002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  19  1MV-KDKYQYLTRDMAWEPTYQDKK-------------DIFPEEDFEGIKITDWSQWEDPFRLTMDAYWKYQAEKEKKLYAIFDAFAQNNGHQNISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGL---HDGPHMHDRVWYLSVPKSFFDDARSAGPF-EFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQEDNVPIVQRWIDKWFWRGFRLLSLV-SMMMDYMLPNKVMSWSEAWEVYY-EQNGGALFKDLERYGIRPPKYQDVANDAKHHLSHQLWTTFYQYCQATNFHTWIPEKEEMDWMSEKYPDTFDKYRPRYEYLAKEAAAGRRF---------YNNTLPQLCQVCQIPTIFTEKDAPTSHRQIEHEGERYHFCSDGCCDIFKHEPEKYIQAWYQGNCEGGDLETVVQKYYHINIGEDNFDYVGSPDQKHSIKGRKPADKNQD......... 509
6 -70.6003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  15  22...PSEYDIVSRKLHYSTNNPDSPWELSPDSPMN----YKQYRNASPLKHDNWDAFTDPDQLVYRTYNLMQDGQESYV-QSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHERELWEKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNHAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQYLERSTSLRASILT........................................................................................................................................................................................................................ 326
7 -69.4001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  13  25...PSEYEVVSTNLHYFTDNPERP----------WELDSNKYCFDSPLKHDDWNAFRDPDQLVYRTYNLLQDGQESYV-QGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDVWENDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNREVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAK--------------SASRYVRQMMGL......................................................................................................................................................................................................... 330
8 -63.0002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  10  29...ATRYQEAS---------YDIEAKTNFHYRPQWDSEHTLDPTRTAIRMEDWCAVSDPRQFYYGAYVGNRAKMQESA-ETSFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALD--ESKAYWMDDEMWQPMRKLVEDTLVVDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGEETNRELLQKWIDHWEPQAYEALKPLAEASVG---------------IDGLNEARAELSARLKKFELQSRG..................................................................................................................................................................................................... 330
9 -53.6001mhy_B mol:protein length:395 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  11  49...LSEYEQLSCYAQPNPDWIAGGLD-----WGDWTQKFHGGRPSWGLRTTDWYRHRDPARRWHHPYVKDKSEEARYT-QRFLAAYSSEGSIRTIDPYWREILNKYFGALLYSEYGLFNAHSSVGRDCLSDTIRQTAVFAALDKVDNAQMIQMERLFIAKLVPGFDASDVPKKIWTTDPIYSGARATVQEIWQGQDWNEILWAGHAVYDATFGQFARREFQRLATVYGDTLTPFFTAQSQTYFQTTRGAIDDLFVYCLANDHNRTFLNAWTEHYLASSVAALKDFVGLY-AKVEKVAGATDSAGVSEALQRVFGDWKIDYADKIGFRVDV..................................................................................................................................................................................................... 382
10 -51.4001mmo_B mol:protein length:384 METHANE MONOOXYGENASE HYDROLASE (BETA CHAIN)  ali model follow..  10  41...LTEYEALTVYAQPNA-----DWIAGGLDWGDWTQKFHGGNETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYT-DRFLQGYSADGQIRAMNPTWRSSCNRYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESAVPKAEWTNGEVYKSARLAVEGLWQEFDWNESAFSVHAVYDALFGQFVRREFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDKEEITASLYRVVDDWIEDYASAID-FKADRDQIVKAVLAGLK........................................................................................................................................................................................... 384
11 -50.8001fyz_C mol:protein length:389 METHANE MONOOXYGENASE COMPONENT A, BETA CHAIN  ali model follow..  10  46...LTEYEALTVYAQPNA-----DWIAGGLDWGDWTQKFHGGNETTELRTVDWFKHRDPLRRWHAPYVKDKAEEWRYT-DRFLQGYSADGQIRAMNPTWRDFINRYWGAFLFNEYGLFNAHSQGAREALSDVTRVSLAFWGFDKIDIAQMIQLERGFLAKIVPGFDESAVPKAEWTNGEVYKSARLAVEGLWQEFDWNESAFSVHAVYDALFGQFVRREFQRLAPRFGDNLTPFFINQAQTYFQIAKQGVQDLYYNCLGDDYNRTVMRNWTGKWLEPTIAALRDFMGLFAKLPAGTTDK-------EEITASLYRVVDDWIEDYASRIDFKADRDQIVKAVLA........................................................................................................................................................................................ 386
12 -37.3005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  1........................................................................................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRIPA--DRDELQRLGRMEGDHASAFVGCGRNLGVVADLPL----------ARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVAAY-----RHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQ--VKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVE----------TLASFSELFREALESVGFEAVEARRLLMR.............................................................................................................................................................................................. 220
13 -35.6005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  13  1.................................................................................MNRTAPSSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLP--DHAEALKKLAAMENRHFKGFQSCARNLEVTPDDP----------FARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIAAY-----NVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVT--VREGIERANAQNLPIVWRMLNAVE----------ADTEVLQMDKEAIVEDFMIAYGEALGDIGFSMRD..................................................................................................................................................................................................... 220
14 -35.1005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  14  1.................................................................................MQQLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLP--ESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQF----------AKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAY-----NIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAE--SKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDA----------LVEDFMIQYGEALSNIGFSTRD..................................................................................................................................................................................................... 220
15 -34.9004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  13  11............................................................................................DFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPD--QRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGF----------AQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAY-----NIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAE--LEEANRQNLPLVWLMLNEVADDARELGMERES----------LVEDFMIAYGEALENIGFTTRE..................................................................................................................................................................................................... 219
16 -34.8004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  11  25............................................................................................DFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVEADMDF----------AREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAY-----HTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREE--LLEANRENLPLIRRMLDQVA----------GDAAVLQMDKEDLIEDFLIAYQESLTEIGFNTRE..................................................................................................................................................................................................... 233
17 -34.7004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  16  11............................................................................................DYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLP--EDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPY----------AQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAY-----NIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFAT--AKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEA----------LVEDFMISYGEALSNIGFSTRE..................................................................................................................................................................................................... 219
18 -33.7004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  11  25............................................................................................DFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVKADMDF----------AREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAISAY-----HTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREE--LLEANRENLPLIRRMADQVAGDAAVLQMDKED----------LIEDFLIAYQESLTEIGFNTRE..................................................................................................................................................................................................... 233
19 -33.6004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  10  3......................................................................................QKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLFNWED----------------VIAFTFLVDGAGLYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNR----MQGAINFWFPRAVEMLHMTWSLNET---HLRDLNISDLTKNDLINGYIKTTNEELKKCGYNEV...................................................................................................................................................................................................... 222
20 -32.5005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  14  9................................................................SHMASMTGGQQMGRGSEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELMP--EQSEELASLAKMEARHKKGFTACGKNLNVT-----------DMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAY-----NVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDE--LERANRENLAIVWRMLDEVAGDALVLGMEKEA----------LMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAA........................................................................................................................................................................................ 258
21 -32.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  12  5...........................................................................................WFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKL-----------FDGLVEDFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRVE--------------ELFPLAVQIVKEGKDKIEPLGYSIQELVNLMEELKKARINKILGSG.......................................................................................................................................................................................................... 213
22 -31.8003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  10  1.....................................................................MRSTQEERFEQRI-AQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTLSWAD----------------IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGEAQKQMLQDAINRFWWPALMMFGP-NDDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEID-----------------QEFNEVINGRGICNQERLDAKRKAWEEGTWVREAALAHAQKQHARKVA.................................................................................................................. 311
23 -31.6004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  10  1...................................................................MGSSGSTEEQRFDQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTLSWAD----------------IGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQNEAQRQMLQDAINRFWWPALMMFGP-NDDNSPNSARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMTVPDPDLQFDEASGHYRFGEID--WQEFNEVISGRGICNHERLAAKRKAWEEW----------VREAALAHAQKQQA............................................................................................................................ 310
24 -31.0005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  13  37............................................................................................DFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELLADK--KAELVGLSKMENRHMKGFQACGRNLKVTPDMA----------FAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAY-----NIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAE--LEAANRQNLPIIWKLLNAVADDARVLGMEKDA----------LIEDFMIAYGEALGNIGFNNRD..................................................................................................................................................................................................... 245
25 -28.0003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  11  1..............................................................................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELA------GEGDEDTLAFTRDERQFSNLLLVE--QPNGNFAD------TIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGDVSGQKMQQAINKLWRFTAELFDA------DEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPML---------------AEMQYLQRVLPGW.................................................................................................................................................... 253
26 -27.9004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  9  1MAVDDDDKMVHHDGFQT-------------VKATIDWEHPMFKLYEKAKRNGWNPAD-------------------------IDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIYKKAG-PGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEERYYELFIRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEID-YDLLRHYVIKQFNLRKKQISRT........................................................................................................................................................................................................ 294
27 -27.5003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  13  16.................................GLNWASLPLKLFAGGNAKFWHPAD-------------------------IDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRAEADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHKICVERA-PGMQELVRRIGDDERRHMAWGTFTCRRHVADDANWTVFETRMN-------ELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAEIDVDYS........................................................................................................................................................................................... 296
28 -26.1004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  12  2.................................................................................................NNPNPVATYALRLGDNGLVLAQRLGAWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLAFGRDE--------RQYSNLLLVEQPNGNFAD------TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGELSNRKMQQAVDNLWRFTGELFLA------DEVELSLVEQGIAVDPRELQAEWQSAVHTALLDSGLQIPQEAAFRSGGKQGLHSEHLGPLL---------------AEMQYLQRSHPGW.................................................................................................................................................... 251
29 -24.2003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  8  7.RIPNNVNLNENK------TLQRALEQWQPSFLNWWDDMGPERTAVSVDPKGWADFGYVKMHDYR--WGIFLAPQEGEKKITFGEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLTAPSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDEDNPRILTAFNEKT---PDWLSFFMFTFITDRDGKFQL------ASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVPTLQKYLNFHYSVTSDLYGAEISSNAA---TYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVAGDKILTRHVPALSALNERLRDDWITDVQAGVDRWNRIPAKF-MFADVHVSPDGRLISE-WTHQHKNWLPTESDRLYVHSLMGRCLEPGKFANWIAAPARGI-------------NNQPVNF--NWSHPQFEK.................................................................... 481
30 -22.9002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  8  2....SEFD--SGETMREEQPHLATTWA----ARGWVEEEGIGSATLGRLVRAWPRRAAVVNKADILDEWADYDTLVPDYPLEIVPFAEHPLFLAAEPHQRQRVLTYNERVIATEQLIALVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRK------SERPPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARDATI---QPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEVRCLPIALEAFAEQDLSALLLELNAAGIRGAEEIVGDLRSTAGGTRLVRDFSGARKMVEQLGL......................................................................................................................................................................................................... 325
31 -20.8003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  9  22...................................................EYHDIWQMYKKAEASFWTAEA----------VDLSKDIQHWESLKPEERYFISHVLAFFAASDIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK--DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVRE------------IIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKV----------------------------------RVENPFDFM........................................................................................................................................................... 286
32 -20.4002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  9  2.......DVLNISKIPIFSKKEKKFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEE----------IDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIK---DEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQN------------IVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKI----------------------------------HAKNPFNWMD.......................................................................................................................................................... 310
33 -20.3002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  9  1..MSSGVDLGTENLYFQSMSDTNESEIKSNEEP-----LRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEE----------VDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNELVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIR--DPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVRE------------IIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKV----------------------------------QAENPFDFMEN......................................................................................................................................................... 312
34 -19.7005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  7  2.......................................IAENAVINRLVGNWHRRAAVKREEPD--VYALFDPGRPDFREDMIPFRGHPIWERLSDETRSRLLSYNRNTVLIEQRIANPAFELVPGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRM----RRSDFSDRVLPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADD---QEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRKVVAGLEAFVAPDFTTWESIVAFEGVPGWEKAAAEVREAQGGTHLVQDHSGIHTLLTEMDV......................................................................................................................................................................................................... 295
35 -19.4002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  8  29...................................................EYHDIWQMYKKAEASFWTAEE----------VDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIK--DPKEREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVRE------------IIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSSPTEN-LDADF....................................................................................................................................................... 332
36 -19.1004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  1MGSSSSGLVPRGSHMQADILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-----------DRLSEDERRVILLNLGFFSTAELVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDF--QMEITGKVLDPNEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPETPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIAD-------RRLERIGLKPIYHTKN--------------------PFPWMSETIDLNKEKNFFETRVIEYQHAASLTW............................................................................................................................................ 360
37 -18.6006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  9  38..............................................AINKAYWVHTEVDFTADTQDF-------------------------AHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEFEKLLDVPVIRRRVDYLSNVLKDTKSQ--DNRKYMVSLILFSILIENVSLFSQFAILLSFTRFKG-KNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEE---------TLALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMESLKQINIPVIFDVKVEDYK----------------ALAWFEEEVFANSLDDFFAKRYITANDLF................................................................................................................................................ 338
38 -18.4002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  10  1..MAEVVNISKSASFSKQEKEFSDFQKSKESNEKILNKESNRFTLHPIMYPE---VWNFYKKAEASFWTAEE----------IDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIK---DEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQN------------IVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMDLISLQGKTNFFEKRVADYQKSGVMAQRKEQ-LNTDF....................................................................................................................................................... 349
39 -18.2003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  9  1MGDPERPEAAGLDQDERSSSDTNESEIKSNEEP-----LRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEE----------VDLSKDLPHWNKLKADEKYFISHILAFFAASDIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIR--DPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVRE------------IIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDAD...................................................................................................................................................... 350
40 -18.1001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  8  1..MEAHNQFLKTFQKERHDMKEAEKDEIL---------LMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEE----------IELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLINFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFK---DPKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEK------------IITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFMEDVATAGKTTFFEKKVSDYQKASDMSKSATP-FDDDF....................................................................................................................................................... 345
41 -18.0002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  9  1.GMEQLQKRKIYDTTASNASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANWTPFE-------------------------INMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQDEIFEYWKHDDVLKERNEFIIDGYEKF-PTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFP-----ELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGME-KPYPEIKHNPMKWIRAYEDV----------------NSGKSDFFEQKY....................................................................................................................................................... 334
42 -17.9001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  12  1MAQKPVADALTLEL---------------------EPVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRT-----------------ITDACEILLILKDNLAGHHRELVEHFLEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVR-------------VQHVMKGYRAEKYTQVETLVYMAFYERC----GAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAA------IAARAADLDVLGADIEAYRDKLQNVADAGIFGKPQLRQLISDR---ITAWGLAGEPSLKQFV............................................................................................................................................................................................... 273
43 -17.7004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  9  1...............................................MRAVNWNKKEDDWKQNIAQFWTEEE----------IAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLLEKKAGIITSYYRRLLKPEVTKKELMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSA-EEQQEVQKETQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNAN-------KGLMNLGLEPKFEEEE--------------------NPIVLNGLRTDTKNHDFFSVKY....................................................................................................................................................... 304
44 -16.6003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  8  10...................................................NWNKISDDWNRLTSNFWLPEK----------VPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQT----KDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIA-SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREE-------------LKSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCALMNLGYEPLFPAEMAILAALSPNADENHDFFSGSGSSYVMGKAVETEDEDW............................................................................................................................................................ 317
45 -16.6001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  9  15...................................................NWNRLQDEWDRLTGNFWLPEK----------VPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCST----AEIDDAFRWSEENRNLQRKAEIVLQSYRGDEPLKRKVA-STLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAE-------------LKDYTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRALMNLGYEAL--------------------------------PRDETDVNPAILS......................................................................................................................................................... 289
46 -16.5003ez0_A mol:protein length:225 uncharacterized protein with ferritin-like fold  ali model follow..  12  10................................................................................................ARYNRFVADLFGMMAYGELSAFERFSADARYSPTLHDRAVLGRIAVVEFRHYELVSARLEAMGIDAEDAML-------------FQAAVDYFHSRTRPADWYESLMKAYVIDT------VSADFYRAISRYVDAGTRDVIEQIQASDETTEVLRERLRSALADDPRLASRLALWGRRLLGEALTQAQRVSYEHAFLGSGGEDSAAAKELVSGLIAGLAEKHSKRMTQLGLTG....................................................................................................................................................................................................... 225
47 -16.3001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  8  97..............................................KAEASFWTAEE-------------------------VDLSKDIQHWEALKPDERHFISHVLAFFAASDIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIK--DPKEREYLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVRE------------IITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFMENISLEGKTNFFEKRVGEYQRMGVMSNSTEN-LDADF....................................................................................................................................................... 390
48 -16.2001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  11  25...................................................PDEKDLEVWDRLTGNFWLPEK----------IPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLAST----PQINEAFRWSEENENLQRKAKIIMSYYNGDDPLKKKVAS-TLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEE-------------YKAYTFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRALNNLGYEGLFPTDETKVS----------------PAILSSLSPNADENHDFFSGSY....................................................................................................................................................... 314
49 -16.2004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  14  18...............................................................................................NPRFAQLLLEQFGG-ATGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFA-GPHFLDSQGNAWTASYLNEGGDVVRDLRANIAAE----AGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL........................................................................................................................................................................................................................................................................... 180
50 -16.2004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  8  9...................................................NWNAIEDVWEKLTEQFWLDTR----------IPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTK----SEIDEIFAWTNTNPYLQKKAEIINEIYLNGTALEKKIAS-VFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEK-------------LKEWMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRALMNLGQDPLFPDSADDVNPIVMNGTSNHDFFSQVGNGYLLGEVEAMQDDDY............................................................................................................................................................ 315
51 -16.1001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  10  10...................................................NWNKIQDDWNRLTSNFWLPEK----------VPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQT----KEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIA-SVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREE-------------LKLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCALMNLGYEALFPPEMADVN----------------PAILAALSPNADENHDFFSGSY....................................................................................................................................................... 304
52 -15.9001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  9  122....................................................WTAEEIDLSKDIHDW-------------------------NRMNENERFFISRVLAFFAASDIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKES--EFLFNAIHTIPEIGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEK------------IVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFMENISLAGKTNFFEKRVSDYQKAGVMSKSTKQ-FNEDF....................................................................................................................................................... 413
53 -15.9006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  11  1MGSSSS-GLVPRGSTKNYYDRSVSPVEYAYFDQS-----------QNMRAINWNKIVDEWNRVTQNFWLPEN----------IPVSNDLPSWNELDDDWQQLITRTFTGLTLLDVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTS----EQIEEAHEWVVDNEALQARPKALIPFYTADDPLKSKIA-AALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAE-------------MKQFVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLFLQNLGYESPFTKEETRIA----------------PEVFAQLSARADENHDFFSGSY....................................................................................................................................................... 334
54 -15.7001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  7  32...................................................KYDIFEKLIEKQLSFFWRPEE----------VDVSRDRIDYQALPEHEKHIFISNLKYQTLLDIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGAD-----DPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVERMQAVGLDL--------------------------------PFQTRSNPIPWINT......................................................................................................................................................... 337
55 -15.4006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  8  36...................................................NWNVVNDEWNRITQNFWLPEK----------IPVSNDLTSWRTLTPEWQELITRTFTGLTLLDIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSS----EQIEEAHEWVINTETLQERAKALIPYYVNDDPLKSKVA-AALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAE-------------MKEFVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVFLQNLGYD........................................................................................................................................................................................................ 294
56 -14.9002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  13  2.................................................................QVTHSMPPQKLEIFKSLDDWARNNIHLKSVEKSWQDDYFVVLVGDMITEEALPTYMSMLNRCAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSG---------------IKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIA--FADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDR........................................................................................................................................................ 334
57 -14.5001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  10  2STLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQ---KIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERA---KEIPDDYFVVLVGDMIT----EEALPTYQTMLNTLDGPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDM------------------RQIEKTIQYLIGSG--SPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLA--FADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDR........................................................................................................................................................ 359
58 -14.0003sid_A mol:protein length:180 Symerythrin  ali model follow..  10  23...............................................................................................HNNTDANAASSIEVEMYECDCMYPTFAEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQIDAVASDSRG--------LRRALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE............................................................................................................................................................................................................................................................................ 178
59 -13.7001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  7  32...................................................KYDIFEKLIEKQLSFFWRPEE----------VDVSRDRIDYQALPEHEKHIFISNLKYQTLLDIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGAD-----DPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVERMQAVGLDLPFNTRS---NTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSN......................................................................................................................................................... 372
60 -13.6001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  6  32...................................................KYDIFEKLIEKQLSFFWRPEE----------VDVSRDRIDYQALPEHEKHIFISNLKYQTLLDIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRYYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGAD-----DPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVERMQAVGLDLPFQTRS---NTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSN......................................................................................................................................................... 372
61 -13.5001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  6  32...................................................KYDIFEKLIEKQLSFFFRPEE----------VDVSRDRIDYQALPEHEKHIFISNLKYQTLLEIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEG--ISSYYDELIELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGAD-----DPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVERMQAVGL--DLPFNTRSNPIPWINTWLQVAPQEVEVSSYLVGQIDSEVDTDDLSN......................................................................................................................................................... 372
62 -13.4004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  8  1MGSSSSGLVPRGSHMMTKIYDAANWSK----------EDDFTQMFYNQNVKQWLPEE-------------------------IALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGLYKAI-DDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAE-------------LREFAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRALMNLGFDPYFEEED----NGLNTKTKSHDFFSMKGNGYKKATVEPLKDDDFFEDE........................................................................................................................................................ 340
63 -13.4001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  8  1..............................................................................................MKDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEEGYPEIAGLIAEGETAHAFGHLDFIRQGGLTDP------------ATDKPIGTLEQMIESAIAG--------------ETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGGT.......................................................................................................................................................................................................................................................................... 144
64 -13.2005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  11  69PTVEQVQDMVEDKLMSSEFHDVAKAYIIYRNKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTE---------FNFTSDIQDFKTGLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEFKELKKKPVIMKRVHYLETSLKHAKSD--DDREYTESILLFALFIEHVLFSQFLIIMAFNKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFDEE---------HNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKSLEAIGLEKLFDIDE-------------------QETEWFDDEIIGTKHGDFFVKRYSTSDDLF................................................................................................................................................ 430
65 -13.1002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  7  20.....................................................................................................SLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQP----------VARELEKVQDIIDLIRWAMKAEEIAAEF----YLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWEM......................................................................................................................................................................................................................................................................... 166
66 -12.7004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  13  4.........................................................................................SMAQLKGSKTEENLKYAFA----GESQANRRYLYFASKADVNDIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFGTSRQN----------------------------LQSAIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGLVD............................................................................................................................................................................................................................................................................ 144
67 -12.3002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  15  8...................................................................................................VKELIEGLNEDLAGEYSAYNHNAATVSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLG-----------------------GTPTTIPLRVKQAEDVREMLEYARQSEYETIKR-YEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLNDK.............................................................................................................................................................................................................................................................................. 144
68 -12.2001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  16  5...............................................................................................REDRKAKVIEVLNKARAMELHAIMNQHYSLDDMDYGELAANMKLIAIDEMRHAENFAERIKELGGE----------------------------GKVVTGQAVPVIYESDADQEDATIEA-YSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHI.............................................................................................................................................................................................................................................................................. 146
69 -12.1002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  11  23...................................................................................................IKKLVDKLVKATAAEFTTYTILRMHLTGMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKE-----------ILKVLLEAEQCAIRTWKEVCD--MTYGKDPRTYDLAQRILQEEIEHEAWFLELLYGRPSGHFRRS...................................................................................................................................................................................................................................................................... 178
70 -11.9001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  10  1..............................................................................................MGSDKIMKVSDILTVAIRLEEEGERFYRELSEHFNG-EIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTL--------KEVLDIAISVEK-----SIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES.............................................................................................................................................................................................................................................................................. 150
71 -11.6003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  11  5....................................................................................................AKVIEYLNAALRSELTAVWLHYRLQEDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGH----------------------------NPLRIGQTLRETLDADLAAEHDART-LYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLM.............................................................................................................................................................................................................................................................................. 141
72 -11.6003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  14  1..............................................................................................MGMQGDPDVLRLLNEQLTSELTAIFLHSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDG-----------------LPNYQRIGSL-----RIGQTLREQFEADLAIEYDVLN-RLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM.............................................................................................................................................................................................................................................................................. 143
73 -11.6003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  13  4...................................................................................................DPDVLKLLNEQLTSELTAIFLHSKMQDNWGFTELAEHTRAESFEEMRHAETITDRILLLDGL----------------------------FSLRVGQTLREQFEADLAIEYEVLE-RLKPGIVLCREKQDATSARLLEQILADEETHIDYLETQLQLM.............................................................................................................................................................................................................................................................................. 141
74 -11.4005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  19  2.............................................................................................QGDPEVIEFLNEQLTA----ELTAIFLHAKLQDHKGWTKLAKYTRAESFDEMRHAEVLTDRILLLDG-----------------LPNYQRLFHV-----RVGQSVTEMFQADREVELEAID-RLRRGIEVMRAKHDITSANVFEAILADEEHHIDYLETQLDLI.............................................................................................................................................................................................................................................................................. 141
75 -11.4002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  13  1............................................................................................ASGSMQGDPDVLRLLNEQLTSELTAIFLHSKMQDNWGFTELAAHTRAESFDEMRHAEEITDRILLLDGL----------------------------GSLRIGQTLREQFEADLAIEYDVLN-RLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM.............................................................................................................................................................................................................................................................................. 145
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.