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Query: 1jku_A mol:protein length:266 pseudocatalase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQGLast
1 -110.0001jku_A mol:protein length:266 pseudocatalase  ali model  100  1MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
2 -86.2002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  28  1MFLRIDRLQIEPMPKEQDPNAAAAVQALLGGRFGEMSTLMNYMYQSFNFRGKKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDAPLGFAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKMLPIPKKYMDLGFHRNLYRFSPEDYGLIWKGASPEDGTEVVVVDGPPTGGPVFDAGH-DAAEFAPE. 284
3 -62.2004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  26  1MVFHKKEPIHVVNIGEANPRFAQLLLEQFGGATGELSAALQYWVQSFHVEN-AGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYK--------------STLFAVRGMGPHFLDSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL----TDPFFGNVQPDETVALYYNLSSNGNGHDERGPWNSE-PAFKYVANPLEKHS................ 230
4 -31.6002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  18  23.................IKKLVDKLVKATA---AEFTTYYYYTILRMHLTGGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACS----------------------------DAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYDPRTYDLAQRILQEEIEHEAWFLELLYGRP......................................................................... 171
5 -31.3002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  14  4.............MSHDVKELIEGLNEDLA---GEYSAIIMYNHNAATVSGIQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTT----------------------------------------IPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQANMTELVVKLEDMIADETNHMEELDRLLNDKA......................................................................... 145
6 -31.3001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  11  6..............EDRKAKVIEVLNKARA---MELHAIHQYMNQHYSLDDMGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK---------------------------------------VVTGQAVPVIYESDADQEDATIEAYSQFLKVCGDIVTARLFERIIEEEQAHLTYYENIGSHIK......................................................................... 147
7 -29.8003sid_A mol:protein length:180 Symerythrin  ali model follow..  14  1MGLNYMGLDRFFQDAVSHNNTDANAASSIEVE--MYECDCMYPTFAEIARGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQ-------------------------IDAVASDSRGLRRALETALEVETIESQKFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE........................................................................ 178
8 -29.6003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  14  2...............QGDAKVIEYLNAALR---SELTAVSQYWLHYRLQEDFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNP---------------------------------------LRIGQTLRETLDADLAAEHDARTLYIEARDHCRDYPSKMLFEELIADEEGHIDYLETQIDLMG......................................................................... 142
9 -29.1002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  17  6...............QGDPDVLRLLNEQLT---SELTAINQYFLHSKMQDN-TELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS---------------------------------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELMD......................................................................... 146
10 -29.1003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  17  17...............KGEPKVIERLNEALF---LELGAVNQYWLHYRLLND-TRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP---------------------------------------LRIGQNVKEVLEADLKGEYDARASYKESREICGDYVSKQLFDELLADEEGHIDFLETQLDLLA......................................................................... 157
11 -29.0005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  18  2...............QGDPEVIEFLNEQLT---AELTAINQYFLHAKLQDHKTKLAKYTRAESFDEMRHAEVLTDRILLLDGLPNYQRLFH---------------------------------------VRVGQSVTEMFQADREVELEAIDRLRRGIEVMHDITSANVFEAILADEEHHIDYLETQLDLIE......................................................................... 142
12 -28.8003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  17  2...............QGDPDVLKLLNEQLT---SELTAINQYFLHSKMQDN-TELAEHTRAESFEEMRHAETITDRILLLDGLPNYQRLFS---------------------------------------LRVGQTLREQFEADLAIEYEVLERLKPGIVLCQDATSARLLEQILADEETHIDYLETQLQLMD......................................................................... 142
13 -28.8001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  14  2...............KGDAKVIEFLNAALR---SELTAISQYWVHFRLQEDWAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDP---------------------------------------LRIGEGPRETLECDLAGEHDALKLYREARDYCGDIVSKNIFESLITDEEGHVDFLETQISLYD......................................................................... 142
14 -28.7003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  17  4...............QGDPDVLRLLNEQLT---SELTAINQYFLHSKMQDN-TELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGS---------------------------------------LRIGQTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELMD......................................................................... 144
15 -28.6002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  18  12..............KLDVKSLIDQLNAALS---EEWLAYYQYWVGALVVEGAMDVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFELARCKY-------------------------------SPTAFDSVSLLNQNVSSERCAILRYQEIANFTNDYTTCDIAKHILAEEEEHEQDLQDYLTDIA......................................................................... 161
16 -28.5004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  15  2...............KGDQKVIEYLNRGLR---SELTAVSQYWLHYRMLED-KDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDP---------------------------------------LRIGQTVKEVLESDLAAEREARALYQEGAAYAGDFPSKNLFEELMGDEEHHIDFLETQLDLVS......................................................................... 142
17 -27.9001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  14  2...............KGDKIVIQHLNKILG---NELIAINQYFLHARMYEDWEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGK---------------------------------------LLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCGDYASRELLEDILESEEDHIDWLETQLDLID......................................................................... 142
18 -27.7005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  14  2...............KGDKTVIQFLNKQLT---NELTAINQYFLHARMLNH-DKLGKHEYEESIGEMKHADRLIARIFMLDGLPNLQDLHK---------------------------------------LLIGEDVPELLACDLKLEQAAHATVREAIAHCRDYVSRDLFQDILDDTEEHIDYLETQIDLID......................................................................... 142
19 -27.4004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  15  2...............KGDKKVIQHLNKILG---NELIAINQYFLHSRMWNDWKRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGK---------------------------------------LLIGENTQEMLQSDLNLELCATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ......................................................................... 142
20 -27.2003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  15  2...............KGDKKVIQHLNKILG---NELIAINQYFLHSRMWND-KRLGAHEYHESIDEMKHADKLIERILFLEGLPNLQDLGK---------------------------------------LLIGENTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ......................................................................... 142
21 -27.0001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  14  2...............KGDTKVINYLNKLLG---NELVAINQYFLHARMFKN-KRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGK---------------------------------------LNIGEDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDEEGHIDWLETELDLIQ......................................................................... 142
22 -27.0005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  15  2...............KGDKKVIQHLNKILG---NELIAINQYFLHSRMWNDWKRLGAHEYHESIDEMKHADKLIERILFLEGAPNLQDLGK---------------------------------------LLIGANTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQLGLIQ......................................................................... 142
23 -26.9004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  12  6.............AQLKGSKTEENLKYAFAG---ESQANRRYLYFASKADVENDIAALFRSTAEGETGHAHGHLEYLEAVGDPAT---------------------------------------------LPFGTSRQNLQSAIAGETHEYTDMYPGMAKTARFEEIANWFETLAKAERSHANRYTKALDGLVD........................................................................ 144
24 -26.8003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  14  2...............KGDTKVINYLNKLLG---NELVAINQYFLHARMFKN-KRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGK---------------------------------------LNIGEDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDERGHIDWLRTELDLIQ......................................................................... 142
25 -26.4004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  14  3...............KGDTKVINYLNKLLG---NELVAINQYFLHARMFKN-KRLNDVEYRESIDEMKHADRYIERILFLEGLPNLQDLGK---------------------------------------LNIGEDVEEMLRSDLALELDGAKNLREAIGYARDYVSRDMMIEILRDEEGHIDWLETELDLIQ......................................................................... 143
26 -26.2004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  1....MPELAVRTEFDYSSEIYKDAYSRINA-IEGEQEAYSNYLQMAELL---PEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQ---------------------------HAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVA-DDFARKITEGVVKDEYTHLNYGEEWLKANFATAKE.................................................................... 164
27 -25.8001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  16  2.............KDLKGTKTAENLKQGFIG---ESMANRRYLYFAKRADEEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKP-------------------------------------------IGTLEQMIESAIAGETYEWTQFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKGG....................................................................... 143
28 -25.6005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  10  1M---QQLTDQSKELDFKSETYKDAYSRINA-IEGEQEAHENYITLAQLL---PESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQ---------------------------TAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKA.................................................................... 165
29 -25.6002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  13  5...................TLAEFLAHAIA----ETEAAERYLADMMEAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVG---------------------------DENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRP....................................................................... 152
30 -25.5002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  16  17................ADFSLEELLGMAIK----EIGAREFYKSLAEKIKI-EALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQP---------------------------VARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNW....................................................................... 164
31 -25.1001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  12  20..................................EEEGERFY--RELSEHFNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDT-------------------------SEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKREST......................................................................... 151
32 -24.9004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  10  1....MPQLEASLELDFQSESYKDAYSRINA-IEGEQEAFDNYNR---LAEMLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFK---------------------------AAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DAFARKITEGVVRDEYLHRNFGEEWLKANFDASKA.................................................................... 164
33 -24.8005n5e_e mol:protein length:99 PFC_05175  ali model follow..  21  1....................................................................................................................MGLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPE....................................................................... 79
34 -24.8005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  10  2....NRTAPSSAALDYRSDTYRDAYSRINA-LEGEREAHANYLT---LAEMLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLTT---------------------------CMVIQALIIECFAIAAYNVYIPVA-DAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVRE.................................................................... 165
35 -24.1004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  12  23............LPDFTSDRYKDAYSRINA-IEGEQEAHDNYIA---IGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTPT---------------------------CLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE.................................................................... 178
36 -23.6004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  12  23............LPDFTSDRYKDAYSRINA-IEGEQEAHDNYIA---IGTLLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQ---------------------------TALGQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLESCRE.................................................................... 178
37 -23.5003r2h_A mol:protein length:154 Bacterioferritin  ali model follow..  18  2...............QGHPEVIDYLNTLLT---GELAARDQYFIHSRMYED-SKLYERLNHEMEEETQHADALLRRILLLEGTPRMRPDD----------------------------------------IHPGTTVPEMLEADLKLERHVRAALAKGIALCKDFVSRDILKAQLADEEDHAYWLEQQLGLIA......................................................................... 142
38 -22.2003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  10  13...........SHMQPISEEEKEGLIEMR---EEEKLARDVYLTLYNKWK-----LQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSI-----------------------GVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQ-------------------ISKEEYEEIISSSTERGMNR............................ 190
39 -22.2005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  10  26...FMPQLEATAAIDYQSETYKDAYSRINA-IEGEDEAANNYVR---LAELMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQ---------------------------VAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHA-DDFARKITENVVKDEYLHLNFGEQWLKANFESAKD.................................................................... 190
40 -22.0003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model follow..  8  9..............................................................................................................................PTQELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTNKP......................................................... 91
41 -21.8003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  9  7..........SLPKQPISEEEKEGLIEMR---EEEKLARDVYLTLYNKWK-----LQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSI-----------------------GVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQ-------------------ISKEEYEEIISSSTERGMNRLE.......................... 187
42 -21.5005da5_A mol:protein length:116 Rru_A0973  ali model follow..  10  1....................................................................................................................MAQSSNSTHEPLEVLKEETVNRHRAIVSVMEELEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRTYLFTEGP......................................................... 93
43 -21.5001yux_A mol:protein length:202 Nigerythrin  ali model follow..  11  12...NATNFNMVADSKTSVGSTLENLKAAIAG---ETGAHAKYTAFAKAAREQEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAA---------------------------------------PSAYSCDLNLISGANGEIYETSDMYPAFIRKAQNSKAVHVFTRAKLAESVHAERYLAAYNDI.......................................................................... 163
44 -20.9001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  11  46.FAFLGGRDWDPSQSTLPRTITDACEILL-----KDNLAGHHRELVEHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQH------------------------------VMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRD.................................................................... 209
45 -19.9005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  11  41..............ETYKDAYSRINAIVI---EGEQEAHDNYL----LAELLADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQ---------------------------TAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKA.................................................................... 190
46 -19.7005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  11  5..............DFASAAYREAYSRING-IVGEGLANRHF---QMLARRIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRAE---------------------------CLVIQGLIVECFAVAAYRHYLPVA-DAYARPITAAVMNDESEHLDYAETWLQRHFDQVKA.................................................................... 158
47 -19.7001b71_A mol:protein length:191 PROTEIN (RUBRERYTHRIN)  ali model follow..  9  2.............KSLKGSRTEKNILTAFAG---ESQARNRYNYFGGQAKKDVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPA----------------------------------------GIIADTHANLIASAAGEHHEYTEMYPSFARIARYEEIARVFASIAVAEEFHEKRFLDFARNIKEG....................................................................... 145
48 -19.0002hz8_A mol:protein length:115 De novo designed diiron protein  ali model follow..  13  23..............................................................................................................................KKAKEGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQGNAE....................................................................... 91
49 -18.8005n5f_A mol:protein length:98 encapsulated ferritin  ali model follow..  9  12................................................................................................................................ELLSEETKNMHRALVTLIEELEAVDWYQQRADACSEPGLHDVLIHNKNEEVEHAMMTLEWIRRRSPVFDAHMRTYLFTERP......................................................... 92
50 -18.3003hl1_A mol:protein length:317 Ferritin like protein  ali model follow..  9  9..................PRLYQHFQGAID----ELWTIPYYLTVLYSIKDTTVPYRLIQAAVYQEMLHAQLVSNIANAYGYSPTLSAPETPYSAELGPLDLTRVNTMCLIEYPEWRTQREPDLADDVTDYGSIGEFYDALRVGMEQYQNSPPLTVTESGDAGFLQALTLVDIIVDQAWPHFQRFDFIRRMPNWPGVYTGVTDPPAGSPGAEAQARLIAD.............................................. 272
51 -18.2005l8f_A mol:protein length:116 Rru_A0973  ali model follow..  7  13................................................................................................................................EVLKEETVNRHRAIVSVMEALEAVDWYDQRVDASTDPELTAILAHNRDEAKEAAAMTLEWLRRNDAKWAEHLRTYLFTEGP......................................................... 93
52 -15.8002e0z_A mol:protein length:345 Virus-like particle  ali model follow..  23  16....................................................................................................................................TKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPE....................................................................... 78
53 -15.4002d5k_A mol:protein length:156 Dps family protein  ali model follow..  9  1.............MASNQQDVVKELNQQVA---NWTVAYTKLHNFHWYVKGPNSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGY-------------------------------SAEQMVEELSQDFTNISKQLENAIEIAGDDVSEDMFIGMQTSVDKHNWMFKSYLSL........................................................................... 149
54 -15.2005hjf_A mol:protein length:185 Ferritin, Dps family protein  ali model follow..  10  26..............RSVTAPVTEGFNVVLA---SFQALYLQYQKHHFVVEGSESLHEFFNESYNQVQDHIHEIGERLDGLGGVPVATFSKLAELTCFEQESEGVY------------------------------SSRQMVENDLAAEQAIIGVIRRQAAQAEDRGTRYLYEKILLKTEERAYHLSHFLAK........................................................................... 174
55 -15.1001moj_A mol:protein length:182 Dps-like ferritin  ali model follow..  12  24..............ADRAEQCVDALNADLA---NVYVLYHQLKKHHWNVEGAEDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEASVDVEDEDVY------------------------------DIRTSLANDMAIYGDIIEATREHTELAEDHATAHMLREGLIELEDDAHHIEHYLED........................................................................... 172
56 -15.0001jig_A mol:protein length:146 Dlp-2  ali model follow..  10  1...............STKTNVVEVLNKQVA---NWNVLYVKLHNYHWYVTGPHTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSSVNEGTSKE-------------------------------SAEEMVQTLVNDYSALIQELKEGMEVAGDATSADMLLAIHTTLEQHVWMLSAFLK............................................................................ 146
57 -14.8004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  9  7............SVKEVPQDLTNTLVNIIELADFELAMVEQY-SPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKL----------------------------EVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEP-LSTLASSMIKEEESHIFFSQNELRNYQNK....................................................................... 160
58 -14.7001nnq_A mol:protein length:171 Rubrerythrin  ali model follow..  16  1.............MVVKRTMTKKFLEEAFAG---ESMAHMRYLIFAEKAEQEPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTPE--------------------------------------------------NLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK........................................................................ 130
59 -14.6002ib0_A mol:protein length:170 CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN  ali model follow..  10  12..........PKRSPSEGSADNAALCDALA---VEHATI--YGYGIVSALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGYQLPMQVS-------------------------------------SAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVLGA........................................................................... 150
60 -14.4005ux1_A mol:protein length:237 tRNA-(MS(2)IO(6)A)-hydroxylase-like  ali model follow..  13  35.............VEQANAHPMEVLIDH---AHCERKAAGAAVQMMFRYLCEPGLGEALSPLAREELEHFEQVLALIKARGRYLEPLPSPGYGADLARQIRKGE-----------------------------PQRMLDSFLVAGLIEARSHERMALLAEHSPDPQLRELYSDLLASEARHFGLYWVLCEQRYPR....................................................................... 184
61 -14.2002vxx_A mol:protein length:192 STARVATION INDUCED DNA BINDING PROTEIN  ali model follow..  11  23..............KATTTPICEGMNRLLA---SFQALYLQYQKHHFVVEGAEPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLAALCCFTPEPEGAF------------------------------NCRQMLSNDLQAEQAIIGVLRQQATQAEDRATAYLYDQILLKTEERAYHIGHFLAN........................................................................... 171
62 -13.7001n1q_A mol:protein length:149 DPS Protein  ali model follow..  12  3..............TSIQQLVAVLLNRQVA---NWVVLYVKLHNFHWNVNGPNTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEASIKEATGGE-------------------------------SAAEMVSSVVNDFVDLVGELKVARDVADDEATADMLDAIEAGLEKHVWMLEAFLE............................................................................ 149
63 -13.2003qz3_A mol:protein length:184 Ferritin  ali model follow..  17  12.................SQAMVEHLNEQIN----EFFSSNLYLQMSAWCEDKDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHD---------------------------------------ASLGEVFRETYQHEQKITQQINKLAHVAQDYSTFNFLQWYVAEQHEEEKLFKGILDKLE......................................................................... 151
64 -13.1001mft_A mol:protein length:53 Four-helix bundle model  ali model follow..  13  1.........................................................................................................................................MDYLRELYKLEQQAMKLYREASEKARNPEKKSVLQKILEDEEKHIEWLETIN............................................................................. 52
65 -12.9002cf7_A mol:protein length:165 DPR  ali model follow..  8  12..............RPSLADSKAVLNQAVA---DLSVAHSILHQVHWYMRGRGIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNV-----------------------------TIEEQLARVVEVFRYLAALFQKGFDVSDDSVTNDIFNVAKASIEKHIWMLQAELGQAPK........................................................................ 164
66 -12.8005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  10  7............STPQEIREGIKYLSAHF--YPAS-IMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFDGLV----------------------------EDFQSSRWRENIATRFHMITETVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR.................................................................... 165
67 -12.8002xgw_A mol:protein length:199 PEROXIDE RESISTANCE PROTEIN  ali model follow..  8  38..............ASKNEKTKAVLNQAVA---DLSVAASIVHQVHWYMRGPGYLHPKMDELLDSLNANLDEVSERLITIGGAPYSTLAEFSKHSKLDEAKG-----------------------------TYDKTVAQHLARLVEVYLYLSSLYQVGLDITDDAGTNDLFTAAKTEAEKTIWMLQAERGQ........................................................................... 187
68 -12.7005xgo_A mol:protein length:200 DNA protection during starvation protein,Bacterioferritin  ali model follow..  11  31..............DSEKKATVELLNRQVI---QFIDLSLITKQAHWNMRGANAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKTPLKSYPLDIH------------------------------NVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLWFIECNLDLIQ......................................................................... 178
69 -12.6003oj5_A mol:protein length:189 Ferritin family protein  ali model follow..  12  8.................KTKFHALMQEQI---HNEFTAAQQYVAIAVYFDSEPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQ---------------------------------------DRPREALALALDQERTVTDQVGRLTAVAGDFLGEQFMQWFLQEQIEEVALMATLVRVAD......................................................................... 147
70 -12.6002c41_A mol:protein length:158 DPS FAMILY DNA-BINDING STRESS RESPONSE PROTEIN  ali model follow..  12  5..............TTLKEQVLTTLKREQA---NAVVMYLNYKKYHWLTYGPLDLHLLFEEQGSEVFAMIDELAERSLMLDGQPVADPADYLKVATVTPSSGQLTVK----------------------------QMIEEAIANHELIITEMHQDAEIATEAGDIGTADLYTRLVQTHQKHRWFLKEFLAK........................................................................... 152
71 -12.6003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  12  23..............DWMPDAYRKTLIRQIG-AHSEIVGMLPE-GNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSI----------------------------FNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGP-YARAMVKICKEESFHQRQGFEACMALAQGSEA.................................................................... 177
72 -12.5002itb_A mol:protein length:206 TRNA-(Ms(2)io(6)a)-hydroxylase, putative  ali model follow..  13  21.............IEAALADQETLLIDH---KNCEFKAASTALSLIAKYNTHLDLINMMSRLAREELVHHEQVLRLMKRRGVPLRPVSAGRYASGLRRLVRAHE-----------------------------PVKLVDTLVVGAFIEARSCERFAALVPHL-DEELGRFYHGLLKSEARHYQGYLKLAHNYGDE....................................................................... 169
73 -12.5001ji5_A mol:protein length:142 Dlp-1  ali model follow..  11  1...................QVIEVLNKQVA---DWSVLFTKLHNFHWYVKGPQTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQEAAYGETAE----------------------------GMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELEKHAWMLRAFLN............................................................................ 142
74 -12.5004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  13  57............SLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRIFYEA-------LPEAMNRLYADDSPEAVIRAATVYN-----MIVEGTLAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDER.................................................................... 230
75 -12.3003vv9_A mol:protein length:329 Alternative oxidase, mitochondrial  ali model follow..  13  120.......................LFLETVAGVPGMVGGMLRHLSSLRYMTRDKGWINTLLVEAENERMHLMTFIELRQP----------------------------------LRVSIIITQAIMYLFLLVAYVISPRFVHRFVGYLEEEAVITYTGVMRAIDEATFRDLINVIRADEAEHRVVNHTFMHEKRLQNSVNPFVVLKKNPEEMYSNQPSGKTRTDFGSEGAKTASNVNKHV........................... 329
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.