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Query: 1mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AYTTFSATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQLLast
1 -108.0001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model  100  1AYTTFSATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
2 -104.0001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  98  1AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
3 -102.0001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  98  1AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRYYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL 375
4 -94.8001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  98  1AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWL.................................... 339
5 -89.4004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  21  2.......................RAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIIFDWVDNHPLLEKKAGIITSYYRR-----------------------LLKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSA----EEQQEVQKETQELLMELYEIEMAYTEEIYTS----IGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINPIVLNG-LRTDTKNHDFFSVKGNGYVKATNVEKLADDDF-VFNF 322
6 -89.0004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  22  1..................MQTYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSDEIFAWTNTNPYLQKKAEIINEIYLN-------------------------------GTALEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPE----DEQEKLKEWMYDLLYTLYENEEGYTESLYDT----VGWTEEVKTFLRYNANKALMNLGQDPLFPDADDVNPIVMNGISTGTSNHDFFSQVGNGYLLGEVEAMQDDD---NYGL 319
7 -88.3002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  22  7KRKIYDTTA-SNASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMR-AAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQIFEYWKHDDVLKERNEFIIDGYEKF------------------------VDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPE----LNTEETKTFVKTTLMKAADLEKDWFRYIIGD-KIPGINPEDMETYISFIANKRAVQLGMEKPYPEKHNPMKWIRAYEDVNSGKSDFFEQKSRQYAKVSADNGFDE........ 345
8 -87.1004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  20  23.....KQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGK----------------VLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPE----IWTPELQQEIVELIKRAVDLEIEYAQDCLPRGIL-GLRASMFIDYVQHIADRRLERIGLKPIYHTK-NPFPWMSETIDL-NKEKNFFETRVIEYQHAASLT............ 359
9 -86.9001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  21  2........SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQEAFRWSEENENLQRKAKIIMSYYNG-------------------------------DDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSE----AEQEEYKAYTFDLMYDLYENEIEYTEDIYDD----LGWTEDVKRFLRYNANKALNNLGYEGLFPTDETKVSILSSLSPNADENHDFFSGSGSSYVIGKAEDTTDD----DWDF 329
10 -86.4002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  20  1..SMTKAAAPGVEDEPLLRENPRR-FVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKK--------------------------KADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE-----------ERVREIIINAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVE-NPFDFMENI--SLEGKTNFFEKRVGEYQRMGVMSSPTENSFTDF.. 332
11 -86.2003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  21  1.................MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDAAYAWSEENAPLQRKAQIIQQHYRG-------------------------------DDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISL----GQREELKSFAFDLLLELYDNELQYTDELYAE----TPWADDVKAFLCYNANKALMNLGYEPLFPAEMNPAILAALSPNA-DENHDFFSGSGSSYVMGKAVETEDE----DWNF 319
12 -86.0001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  17  10TFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPIPLFKEIANLPEVKHKAAFIERWISN-----------------------------DDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNP-----------KIIEKIITEAVEIEKEYYSNSLPV-EKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAV-NPFEFMEDVA--TAGKTTFFEKKVSDYQKASDMSKSATPSK-EINF 341
13 -85.8002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  20  16QEKEFSDFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKN---------------------------KALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE-----------NVVQNIVKEAVEVERSFICESLPCD-LIGMNSRLMSQYIEFVADRLLECLGCSKVFHSK-NPFNWMDLI--SLQGKTNFFEKRVADYQKSGVMAQRKEQVFSDF.. 349
14 -84.4006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  19  10KNQYYNESVSPIEYAQQGFKGKMRSVNWNVVNDEKDLEVWNRITQNFWLPEKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQEAHEWVINTETLQERAKALIPYYVN-------------------------------DDPLKSKVAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSP----EKQAEMKEFVFKLLYELIDLEKAYLKELYED----FGLADDAIRFSVYNAGKFLQNLGYDSPFTEETRIEPEIFTQLSARAENHDFFSGNGSSYIMGVSEETEDD----DWEF 345
15 -84.3003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  20  17RSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKK--------------------------KADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE-----------ERVREIIVDAVKIEQEFLTEALPVG-LIGMNCILMKQYIEFVADRLLVELGFSKVFQAE-NPFDFMENI--SLEGKTNFFEKRVSEYQRFAVMAETTDNVFTDF.. 351
16 -83.7006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  19  20......RSVSPVEYAYFDQSQNMRAINWNKIVDEKDLEVWNRVTQNFWLPENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQEAHEWVVDNEALQARPKALIPFYTA-------------------------------DDPLKSKIAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSP----EKQAEMKQFVFDLLDKMIGLEKTYLHQLYDG----FGLADEAIRFSLYNAGKFLQNLGYESPFTKEETPEVFAQL-SARADENHDFFSGSGSSYIIGTSEETLDED---DF.. 349
17 -83.5004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  19  1...MGSSSSGLVPRGSHMMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAHAKSYSNIFMTLAPTENEVFEWVKQNKYLQKKAQMIVGLYKA-------------------------IQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTE----EKKAELREFAIDLLNQLYENELEYTEDLYDQ----VGLSHDVKKFIRYNANKALMNLGFDPYFEEE-DINPIVLNGLNTKTKSHDFFSMKGNGYKKATVEPLKDD----DFYF 337
18 -83.4001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  21  1.................MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEAAYAWSEENPPLQRKAQIILAHYVS-------------------------------DEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSA----IEREELKLFALDLLMELYDNEIRYTEALYAE----TGWVNDVKAFLCYNANKALMNLGYEALFPPEMADVN-LAALSPNADENHDFFSGSGSSYVMGKTVETEDE----DWNF 319
19 -82.8001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  22  2.............TGNAKLIDRVSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIAFRWSEENRNLQRKAEIVLQSYRG-------------------------------DEPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDD----VTRAELKDYTYELLFELYDNEVEYTQDLYDE----VGLTEDVKKFLRYNANKALMNLGYEALFPRETDVNPAILSALSPNAD............................... 296
20 -79.3002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  21  15KEKKFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENI---------------------------PAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPE-----------EVVQNIVKEAVEVERSFICESLPC-DLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAK-NPFNWMD....................................... 310
21 -78.3001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  22  62......APTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKELFNAIETMPCVKKKADWALRWIGD-----------------------------KEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAE-----------QRVREIITNAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVE-NPFDFMENI--SLEGKTNFFEKRVGEYQRMGVMSNSTENSFTDF.. 390
22 -78.0001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  21  75SHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKELFNAIHTIPEIGEKAEWALRWIQD-----------------------------ADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDP-----------AIVEKIVTEAVEIEQRYFLDALPVA-LLGMNADLMNQYVEFVADRLLVAFGNKKYYKVE-NPFDFMENIS--LAGKTNFFEKRVSDYQKAGVMSKSTKQEAGAFTF 409
23 -77.4002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  21  16SMSDTNESEIKSNEEPLL-RKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKLFNAIETMPYVKKKADWALRWIAD-----------------------------RKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSE-----------ERVREIIVDAVKIEQEFLTEALPV-GLIGMNCILMKQYIEFVADRLLVELGFSKVFQAE-NPFDFMENISLEGKTN.............................. 320
24 -77.2006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  16  3..........SSSSGLVPRGSHMSIVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFHALSLAEKTAVKNSLLAIAQIEVAVK-SFWGNIYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDE--FEKLLDVPVIRRRVDYLSNVLKDT------------------------KSQDNRKYMVSLILFSILIENVSLFSQFAILLSFRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPD----YFDEETLALVRETVKDSIAVESDILDWIFEEGEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVKALAWFEEEVFANS-LDDFFAKRPVEYTKHDKSITANDL....... 337
25 -74.4003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  21  2..........GVEDEPLLRENPRR-FVIFPIEYHDIWQMYKKAEASFWTAEAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKK--------------------------KADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSE-----------ERVREIIINAVRIEQEFLTEALPV-KLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVE-NPFDFM........................................ 286
26 -72.2005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  13  89DVAKAYIIYRNKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKTGLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLN--EEFKELKKKPVIMKRVHYLETSLKHA------------------------KSDDDREYTESILLFALFIEHVSLFSQFLIIMAFKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPEWFD----EEHNNLIKEMCLNSFEAESKVVDWIFEKGELDFLPKAVINEFLKNRFNKSLEAIGLEKLFDIDEAETEWFDDEIIG-TKHGDFFVKRSINYSKRTQSITSDDL....... 429
27 -63.3003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  11  1................MAGMTRTRSGSLAAGGLNWPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQ-----------------------IFYAELPECLNALSADPSPAAQVRASVTYNHIVEGMLALTGYYAWHICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDA-----NWTVFETRMNELIPLALRLIEEGFALYGDQ-PPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVAE-----IDVDYSPAQLEDTFADEDRRTLAAASA.............. 317
28 -59.0004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  10  2........AVDDDDKMVHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDH------------------------YKRIFYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERY--YELFIRYMDELWPHVIGYVDYLTELGKRQQQRTYALEIDYDLLRHYVIKQFNLRKKQISRTKRVDVV-EGLEKTAAE..................................... 309
29 -40.0005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  12  2.........................................................D-KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILK-KLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRL------PPSYIKLFDGLVE-----------------------------DFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR-------------VEELFPLAVQIVKEGKDKIEP----LGYSIQELVNLMEELKKARINKI........................................................ 209
30 -29.9005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  10  1..........................................................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLAR---RIPADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPL----------------------------------ARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAV-----AAYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVK------------ARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEA.................................................... 211
31 -27.6005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  12  3.....................................................QLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLL---PESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAK----------------------------------EFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAI-----AAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESK------------AELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFST.................................................... 218
32 -27.0004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  12  1....................................................MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAE---LLPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPY----------------------------------AQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAI-----AAYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAK------------EELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFST.................................................... 217
33 -26.1004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  11  2...........................................MPTLEMPVAAVLDSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLL---PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAR----------------------------------EFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAI------AYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCR------------EELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNT.................................................... 231
34 -26.0004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  11  1....................................................MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAE---MLPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDM----------------------------------GFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAI-----AAYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASK------------AELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTT.................................................... 217
35 -25.8005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  9  1....................................................MNRTAPSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAE---MLPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDD--------PFARAYFEQLDGNFQQAA--------------------------AEGDLTTCMVIQALIIECFAI-----AAYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVR------------EGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSM.................................................... 218
36 -24.8004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  11  14...................................................DSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGT---LLPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADM--------DFAREFFAPLRDNFQTAL--------------------------GQGKTPTCLLIQALLIEAFAI------AYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCR------------EELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNT.................................................... 231
37 -23.5005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  11  24.................................................SEFMPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELL---ADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAK----------------------------------QFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAI-----AAYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESK------------AELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNN.................................................... 243
38 -23.5002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  7  63....................TAIRMEDWCAVSDPRYYGAYVGNRAKMQESAEFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMN-NAKIAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKAYWMDDEMWQPMRKLVEDTL--------------------------VVDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETN---------RELLQKWIDHWEPQAYEALKPLAEA-----SVGIDGLNEARAELSARLKKFELQS.................................................... 328
39 -23.3005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  14  24.................................................SEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAE---LMPEQSEELASLAKMEARHKKGFTACGKNLNVTPDM----------------------------------DFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAI------AYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAK------------DELERANRENLAIVWRMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFST.................................................... 243
40 -20.8003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  11  29................................FPERMSGHMGIPLEKWESYDKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTG-EGRMARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAYHSNEWAAIAAKHFFDDII--------------------------TGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTPLEDRSQSF---KEFMYEWIIGQFERSLIDLGLDKPWYWDL-TTAWWNPAAGVTPEERDWLEEK---Y................... 362
41 -20.5003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  7  2.........................................RSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGN-WITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSI------------------------------------NYPTLSWADIGVIGWLVDGAA-----IVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQ-----KQMLQDAINRFWWPALMMDNSPNSARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMT..................................................... 241
42 -20.3004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  9  2.......................................................MQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVN-APTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIE-----------------------------------RISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGA------LYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNR-------MQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYN..................................................... 220
43 -20.2004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  7  14..................................................QRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGN-WITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDL-----------------------------------YQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAA-----IVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQ-----RQMLQDAINRFWWPALMMDNSPNSARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMT..................................................... 244
44 -18.4002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  9  66............................................LVPDYPLEIVPFAEHPLFLAAEPHQRQRVLTGNERVIATEQLIAEPAFDLVMHGVDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRKISERPPQPELVTYRRLRRV-----------------------------LADMPEQWERDIAVLVWGAVAETCI---NALLALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLSALLLELNAA-------GIRGAEEIVGDLRSTAGGVEQLGL...................................................... 325
45 -18.0001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  28...............................LFPEEMSGARGISMEAWEKYDKAALERDGFVDRADPGWVSTMQLHFGAIALEE-YAASTAEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIHTNEWAAIAARSFFDDMM--------------------------MTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGP---IMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQ-PTVWWDPAAGVSPEEREWLEEK---Y................... 362
46 -17.1001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  15  16.................................PVVEANMTRHLDT-WFAHDY--FLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANED-------------------------------------VRVQHVMKGYRAEKYTQVETLVYMAFYE----RCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAA-----RAADLDVLGADIEAYRDKLQNVADAGIFGKPQLRQLIS----DRITAWGLAGE................................................... 266
47 -16.8001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  7  2AISLATKAATNRAPVGVEPQEVHKWLQSFNWDFKENRTKYPTKYHM-ANETK-DGLTRLGAGNKVHPRWGETMKVISNFLEVGE-YNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKH------------------------YHDPAGHNDARRTRAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASKFLNTDLNNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWI-GRLGKYGVPRSLRDAKRDAYWAHHDL-PDEEDQAWFEANYPGW................... 374
48 -16.0001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  56...............................TWYKKYCFDSPLKHDDWVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMG-SVYIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDV-DVWENDPAWQGFRELIEKALIA------------------------------WDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGN----------REVLQKWVAKWEPLADKAIEAYCSALPDGENAIVEAKSASR----YVRQMMGL...................................................... 330
49 -15.7005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  9  35............................................GRPDFREDMIPFRGHPIWERLSDETRSRLLSWNRNTVLIEQRIANPAFELVIG--GGQQLELAVAQAMVDEQYHTLMHINGSAVT----------------------------RRMRRSDFSDRVLPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISI---NAYLDLLADDQEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPA----DRRRFLLEKVVAGLEAFVAPDFTTWESIVAFEGVPGWEKAAAEVREAQGGTTLLTEMDV...................................................... 295
50 -15.5003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  7  62....................SPLKHDNWDAFTDPDVYRTYNLMQDG--VQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMS-SAYVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDA-ELWEKEPGWQGLRELMEKQLTA------------------------------FDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDN---HAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQYLERSTSLRASILT.................................................................. 326
51 -14.7003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  7  5SERIPNNVNLNENKQRALEQWQPSFLNW-SSNYDVYLRTAVSVDPKGWADFGYVKMHDQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLT-APSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDE----------------------------DNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQ-----LASLAESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKEPTLQKYLNFHYSVTSDLYGAEISSNAATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVA..................................................... 341
52 -14.6003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  8  1................................................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGH-APELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGN---------------------------------------ADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVS-----GQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN..................................................... 214
53 -14.0004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  8  2...................................................................NNPNPVATYALRLGDNGLVLAQRLGAWCGH-APELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLAFGRDERQYSNLLLVEQPNGNFAD--------------------------------------TIARQFFIDVWHVALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELS-----NRKMQQAVDNLWRFTGELFLADEVELSLVEQGIAVDPRELQAEWQSAVHTALLDSGLQ..................................................... 212
54 -13.7001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  7  52...............................MANETKEQFKLIAKEYARMEAQDALTRLNAGVRVHPKWNETMKVVSNFLEVGE-YNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYF------------------------AKNGQDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPANTDLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIG-----RLGKYGVESPRSLKD------DAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEA... 374
55 -13.4002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  9  2......VSKNKKLNLKDKYQYLTRDMAWEP-TYQDKKDIFPEIKITDWDPFRFDAFAQNNGHQNISDARYVNALKLFISGISPLEHAAFQGYSKVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNG-LHDGPHMHDRVWYLSVPKSFFDDARS---------------------------AGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNV-PIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSWSEAWEVYYEQNGGALFKDLERYGIRP.................................................... 317
56 -12.4002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  11  7.................MPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYGFEEQVRELRERAKEIPDDYFVVLVGDMITEE--LPTYMSMLNRCDEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQ------------------------------------YLIGSGMDIKSENSPYLGFIYTSFQE-RATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKI....................................................................................................... 238
57 -12.2001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  11  21......PREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFGFDEQVRELRERAKEIPDDYFVVLVGDMITEEAL--TYQTMLNTLDGPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQ------------------------------------YLIGSGMDPRTENSPYLGFIYTSFQE-RATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKI....................................................................................................... 263
58 -11.7003sid_A mol:protein length:180 Symerythrin  ali model follow..  10  2.............................................................GLNYNQEDFNNTDANAASSIEVEMYECDCMYPTFAEIARRPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIE--------------------------------SQIDAVASDSRGLRRALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE......................................................................................................................... 178
59 -10.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  12  1....................................................MVFHKKEPIHVVNIGEANPRFAQLLLEQFGGAELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFAVRGMGPHFLD---------------------SQGNAWTASYLNEGGDVVRDLRANIAAEA----GARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKLTDPFFGNVQPDETVALYYNLSS.................................................................................................. 202
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.