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Query: 1nkw_S mol:protein length:115 50S ribosomal protein L24, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGKTIDLast
1 -62.6001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model  100  1MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKPSMTNPQGGQEQRELALHASKVALVDPETGKATRVRKQIVDGKKVRVAVASGKTID 115
2 -58.5004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  51  1.............MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIK 102
3 -57.9003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  50  1.............MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLD 102
4 -56.8003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  35  2............AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK 104
5 -56.1004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  51  3...........VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRPICPACGKPTRVRKKFENGKKIRVCAKCGGALD 107
6 -49.5005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  49  1.............MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSAGASSGGIVTQEAPIHVSNVMVVDS-DGKPTRVGYRIETGKKVRIAKTNGKDI. 105
7 -49.4005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  45  1.............MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTAISTTQRSGGIVTQEAPIHVSNVMVVDS-DGKPTRIGYRVETGKRVRISKRNGKDI. 105
8 -48.2005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  34  56.DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKIEDGRKVRYLIKTGEIVD 170
9 -46.7005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  33  55.DCKPNSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVMLILKEQEVADRVGHKIEDVRKVRYLIKTGEIVD 169
10 -42.6003j7y_V mol:protein length:216 uL24  ali model follow..  29  42.RPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFEAGERVRVSTRSGRIIP 155
11 -42.5004ce4_Y mol:protein length:216 MRPL24  ali model follow..  32  42.RRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKTV-DYRGTMIPSEAPLLHNQVKLVDPTDRKPTDVEWRFEAGERVRVSTRSGRIIP 155
12 -37.0001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  19  28LSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGE-----------EVPRPLDTSNVRVTDLDLEDEKREARLESEDDS............ 119
13 -35.0003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  14  50..DEKTSFKSEKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVPKLEGQTSHMITIPVSILGKDLRLVADIDDEKTPGKTRTVAVRDVSFNGS...... 159
14 -25.0005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  16  35LSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQ-----------AVSFPVHPSNVVITKLKMDKARKNLIELRRLGRDQILAKLGH... 135
15 -22.3003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  20  32LSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGS-----------TVAVGIHPSNVEITKLKLTHHRK...................... 113
16 -22.2005t2a_X mol:protein length:143 uL24  ali model follow..  20  32LSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGS-----------TVAVGIHPSNVEITKLKLTHHRK...................... 113
17 -22.0002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  23  35LSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGA-----------SVPINLHPSKLVITKLHLDKDRKALIQRKGGKL............ 126
18 -22.0005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  19  26LSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGT-----------TVPVGVHPSNVEITKLKLNHNRK...................... 107
19 -21.9003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  21  34LSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGE-----------STFIGIHPSNVVLTKLKVDKNRKKILDRKAAKE............ 125
20 -21.6005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  19  34LCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGE-----------TVTIGIHPSKVVITKAKLDKDRKALLERKSRATTK.......... 127
21 -19.4003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  22  34LSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGT-----------TVHVGIHPSKVVITRLKLDKDRK...................... 116
22 -11.9002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  29  18...............FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD.................................................................. 51
23 -11.6005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  27  60................TKNNKVKVILGEDREATGVLLSIDGEDGIVRMD.................................................................. 92
24 -11.6002ckk_A mol:protein length:127 KIN17  ali model follow..  18  72................APGKRILVLNGGYRGNEGTLESINEKTFSATIV.................................................................. 104
25 -11.5004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  28  1...............FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNG................................................................. 35
26 -11.2002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  19  2.........SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM........................................................... 48
27 -10.9003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  34  88...........AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ.................................................................. 125
28 -10.6004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  31  88..............NIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLE.................................................................. 122
29 -10.5001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  29  180ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV................................................................... 227
30 -10.1002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  33  123...............FKVGDMVKIISGPFEDFAGVIKEIDPERQELKV................................................................... 155
31 -10.1002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  25  7............KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV................................................................... 42
32 -9.9501nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  38  2............QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV................................................................... 37
33 -9.8305ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  24  130...............FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV................................................................... 162
34 -9.8305xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  29  21..................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH.................................................................. 51
35 -9.7902mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  19  6............EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV................................................................... 41
36 -9.7506duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  25  4............KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV................................................................... 39
37 -9.6304ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  20  1...............LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK.................................................................. 34
38 -9.5705xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  29  331...............FNVGDHVRVIHGKHTDDTGLIVEVNGDKVEFISN.................................................................. 364
39 -9.2702e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  32  21..................GQTVRISQGPYKGYIGVVKDATESTARVELH.................................................................. 51
40 -9.2205xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  21  26.PAGAAKRMAKLRSSITPGTVLILLSGGHRGKRVVFLKQLAPSGLLLVTGPFKVNG---PLRRVNQRYVIATTTKVDISGVDV................................ 105
41 -9.1605t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  20  6............RKSCKPGTIAIILAGRFRGRRVVILKQLPRNGPLVISGPMKYNG---PIRRIDSRYIIATSTKVDIKNVDV................................ 74
42 -9.1305oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  25  60..............NIHVKDIVKVIDGPHSGREGEIRHLFRS......................................................................... 87
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]