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Query: 1olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARMQQFSRVILast
1 -133.0001olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE  ali model  100  1MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARMQQFSRVI 457
2 -49.6005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  11  1........................................MKKLSRTISGVTPVAVMTKPLCPGKCIYCPTFAATPQSYPESPAVLRAKSCEYQAYKQVALPTDKVELIIMGGTFLSADITYQYGFIKDCYDALNGVVAVGLCIETRPDICGKAEIQRMIDFGTTRVELGVQMLDDDIYKLVERGHRVSDVAEATCLLREYGL-KVHYHWMPGLPGSSPEKDLALSRMVFEFCPDGLKLYPTMVVEGTILEQWKEGRYTPYPNGTMTGLIADIKALVPPYVRISRVLRDIPAV----------FISAGLKDSLR--DGVRQILESRHQKCRCIRCREYGHRQRKGQTTLRRLDYPASGGKEIFLSFEDASDTLYGLLRLRIPCASLPVLGQKYGAKTGLVRELHVGSGSGGLGRKLLAEAECLARDEFGLDSLAILAREYYRSLGYELVAGYMCKHL 445
3 -49.3005l7j_A mol:protein length:459 ELP3 family  ali model follow..  13  1........................................MKKLSRTISGVTPVAVMTKPLCPGKCIYCPTFAATPQSYPESPAVLRAKSCEYQAYKQVALPTDKVELIIMGGTFLSADITYQYGFIKDCYDALNGVVAVGLCIETRPDICGKAEIQRMIDFGTTRVELGVQMLDDDIYKLVERGHRVSDVAEATCLLREYGL-KVHYHWMPGLPGSSPEKDLALSRMVFEFCPDGLKLYPTMVVEGTILEQWKEGRYTPYPNGTMTGLIADIKALVPPYVRISRVLRDIPAV----------FISAGLKDSLR--DGVRQILESRHQKCRCIRCREYGHRQRKGQPTLRRLDYPASGGKEIFLSFEDASDTLYGLLRLRIPCASLPVLGQKYGAKTGLVRELHVYGTEL---SLGEQGDQSAQHRGLGRKLLAE...................... 416
4 -22.0004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  18  54.............................................RKYVGDEVHIRAIIEFCRKNCLYCGLR----RDNKNLKRY-RMTPEEIVERARLAVQFGAKTIVLQSGEDPYYMPDVISDIVKEIKKMG-------VAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYE-TGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTP-----LANEKKGDFTLTLKM---------------VALTRILLPDSNIPATTAMGTIVPGGR-------EITLRCGANVIM............................................................................................................................... 301
5 -22.0005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  19  54.............................................RKYVGDEVHIRAIIEFCRKNCLYCGLR----RDNKNLKRY-RMTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKMG-------VAVTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGYE-TGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTP-----LANEKKGDFTLTLKM---------------VALTRILLPDSNIPATTAMGTIVPGGR-------EITLRCGANVIM............................................................................................................................... 301
6 -18.6004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  12  79.............................................EEIYGNRIVIFAPLYVCVNNCRYCGYRHSNEQQRKKLT------MEEVRREVEILEEMGHKRLAVAGEDPVNCPIDYIVDVIKTIYDTK-LKNGSIRRVNVNIAATTVENYKKLKKVGIGTYVLFQETYHRPTYEYMGPKHDYDYHLTAMDRAMEAGIDDVGLGVLYGLYDYKYETVANHLEEKFGVGPHTISVPRLRPALNISIDKF-------PYIVSDKDFKKL------------VAVIRMAVPYTGMILSTREKPKFRE----------EVISIGISQISAGSCTGVGGYHEEISKKGGSKPQFEVEDKRSPNEILRTLCEQGYLPSYCTACYRMGRTGDRFMSFAKSGQIHNFCLPNAILTFKEFLIDYGDEKTKKIGEKAIAVNLEKIPSRTVREETKRRLTRI. 465
7 -18.6004rtb_A mol:protein length:477 HydG protein  ali model follow..  16  83.............................................EEIYGKRIVLFAPLYLCINNCSYCSFR----RENKELSRVRLSL-EEAVDEAKAIREMGHTRILLMGEEPEDKTLSYLEEIIPAIYSEVD-----IRRINVNIAPLTLKGYERLKKLKIGTYQLFQESYNPEVYREVGPKTNFLWRLNAVERAIEAGIDDIGIGALFGLGDPLFELLGDYLKKKFGIGPHTVSVPRLKPALNSV-----FSNDYKISDHKFKKI---------------VALLRIMLPYTGIILSTREPQHLRD----------ELVELGVSQMS............................................................................................................................... 339
8 -18.2003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  17  52.............................................DHYFGNRVFLNCFIYFCKNQCSFCYYNCRNEINRYRLT------MEEIKETCKTLKGAGFHMVDLTMGEDPYYY-EDPNRFVELVQI---VKEELGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYC-VEDGILTGV-GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTP-----LEGFRDKSNLSELKI---------------ISVLRLMFPKRLIPASLDLEGI---------DGMVLRLNAGANIVT............................................................................................................................... 298
9 -17.6006b4c_A mol:protein length:298 Viperin  ali model follow..  14  5..............................................RTGQVPVSVNYHFS-CNKECLFCFHTATTSHVEK---------PENAKRGLTLLKQAGMKKINFAGGEP-FLYPKFLGEMIDFCKETLQLE---SVSIVTNGSLVKEQFLQKHGR-NIDILAVSCDSFNEATNIKIGR-DNVQKLYEIGSWCQKYDI-KFKLNTVV----NKFNHLEDMNDHLNALQPFRWKCFQVLIVTGENDSDKTLRNAH...................................................................................................................................................................................................... 201
10 -17.1006fd2_B mol:protein length:457 Putative apramycin biosynthetic oxidoreductase 4  ali model follow..  12  164........HQPAFGDLAAPLPARDLVDHTPYMFPPIARTGITSINGSFG------------CPYPCRFY-CPYPLSEGRKIRTYPVERIVAEFR----QCAELGITAAVFRDPVFS-FHRDRTLELCQALKAA-----GVPWWCETRIDRLDEEVVAALVDAGCVGVEVGVESGDPDMATAVRKRLNLDTVRKFHAVARKAGLKLVFL-FLIGLPRETRMSIRRTFDFILELGLAEFNLSVITPYPGTELHQIAVDKGWIDGSQNA---FTSHNAVMHTDELSIGDLERASR..................................................................................................................................................................... 426
11 -16.9001r30_A mol:protein length:369 Biotin synthase  ali model follow..  12  69............................................................ACPEDCKYCPQSS---RYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAA-----WKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGIK-VCSGGIVGLGETVKDRAGLLLQANLPTPPESVPINMLVKVKGTP-----LADNDDVDAFDFIRT---------------IAVARIMMPTSYVRLSAGREQMNEQTQ-------AMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRL.................................................................................... 345
12 -16.3005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  17  23.............................................STQRTTPVSVNYHFT-CNYKCGFCFHTAKTSFVLP---------LEEAKRGLLLLKQAGLEKINFSGGEP--FLQDRGEYLGKLVRFCKEELALPSVSIVSNGSLIRERWFKDYGE-YLDILAISCDSFDEQVNALIGRGQGKKNHVENLQKLRRWCRDAFKINSVI-----NRFNVDEDMNEHIKLSPVRWKVFQCLLIEGENSGEDALREAE...................................................................................................................................................................................................... 224
13 -16.1004r33_A mol:protein length:420 NosL  ali model follow..  12  94.................................................RPRLHTFVPLYTCDSECKMCSMR----KGNHRLDRKFSGRKEITEQLEILYHHEGVRGVGFLTGEYEDKHTRSAFRIGWAIRT---ALDLGFERVYFNIGSMEQDEIDVLGEEDPVTMCVFQESYDRETYRRFVPKADFDRRVVSFDRWLDAGYRYVNPGVLVGLHDDLSAELVSLVAHGDHLRSRDLSVPRMRPAMKSRDTTRVGDDDYL----------------------RLMSVVAFTCPEQRLVLTTREPQEFQD----------VALGLAGVISPKSSQFLVADLRRPRHILGRIEASGTPVDH.................................................................................................. 402
14 -16.0005v1q_A mol:protein length:459 Radical SAM  ali model follow..  18  118.................................................SFPLELVIYPSMCDLKCGFCFLANREDRNAKPAKDWERILRQ--------AKDNGVLSVSILGGEP--TRYFDIDNLLIACEEL-----KIKTTITTNAQLIKKSTVEILAKSKYITPVLSLQTLDSKLNFEL-MGVRPDRQIKLAKYFNEVG---KKCRINAVYTKQSYEQIIELVDFCIENKIDRFSVANYSEVTGYTKIKKKYDLADLRRLNEYVTDYITQRE...................................................................................................................................................................................... 325
15 -15.6006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  15  19.................................................PAPVGLLAELTHCPLRCPYCSNPLELDRRSAELD------TQTWLRVLTEAAGLGVLHVHLSGGEP--TARPDIVEITAKCAEL-----GLYSNLITSGVGGALAKLDALYDVGLDHVQLSVQGVDAANAEKIGLKNAQPQKMQFAARVTELG---LPLTLNSVIHRGNIHEVPGFIDLAVKLGAKRLEVAHTQYYGWAYVNRAAL----MPDKSQVDESIRIVEAARERLK................................................................................................................................................................................ 232
16 -15.4004jc0_A mol:protein length:438 Ribosomal protein S12 methylthiotransferase RimO  ali model follow..  15  135.................................................EERPYAYVKI--CDRGCTFC---SIPSFKGSLRSRSIEDITREVE----DLLKEGKKEIILVAQDTTSYGIDALPDLLRRLNSLNGEF------MYLHPDHLTEEIISAMLELDVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRER---VLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVG-----KKLKFLVEGKEGKFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVVIKEHDEYDMWGSVILE......................................................................................................... 432
17 -14.7004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  12  2..................................................PPLSLLI-SSGCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEANGHCSFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENKFL-LSMGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYK---VEFNILCVVTSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDFWYEDFLNGNRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVESDGSVY----PCDFYVLDKWRLGNIQDMTMKELFETNKNHEFIKLSFKVHEECKKCKWFRL-CKGGCRRCRDSKEDSALELNYYCQSYKEFFEYAFPRLINVANN.................................... 368
18 -14.4005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  13  90.............................................MDRKSVVKALCLHIS-CNLRCKYC-FASTGNFGGQRNMMSLEVGKKAIDFLISESGNRKNLEIDFFGGEP-MMNFDVVKGIIEYARQKEEHNKNFRFTLTTNGLLLNDENIKYINENMQNVLSIGRKEVNDRMRIRIDGSGCYDDILPKFKYVAESR-NQDNYYVRGTFTRENMDFS-NDVLHLADEGFRQISVEPVVAAKDSGYDLREEDLPRLFEEYEKL.............................................................................................................................................................................................. 311
19 -14.3001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  15  15.......................................................DLRLSVCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEP--LMRRDLDVLIAKLNQ---IDGIEDIGLTTN-GLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINRNIKATTILEQIDYATSIGLNKVNVVIQKGINDDQIIPMLEYFKRFIEFMD............................................................................................................................................................................................................................... 198
20 -14.2005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  15  95.............................................................CTRRCDFCQIDTGKPAELDR---------DEPRRVADSVRTMGLRYATVTGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPDFNGEPTRLAEVFESGPEVLAHNVET-VPRIFKRIRPAFTYRRSLGVLTAARDAGL-VTKSNLILGL-GETSDEVRTALGDLRDAGCDIVTITQYLRPSARHHPV---------ERWVKPEEFVQFARFAEGLGF------AGVLAGPLVRSSYRAGRLYEQARN................................................................................................................................................. 318
21 -13.8004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  15  63.............................................................CTRACAFCQVEKGHAPAAVDPE--------EPTKIAAAVATLGLRYVVLTSVARDDLPDQGAGQFVATMAAIRQRCPGTEIEVLSP-RLSQRDCIAQIVAAQPACYNHNLETV-RRLQGPVRRGATYESSLRVLATVKELNPDPTKSGLMLGL-GETEAEIIETLKDLRRVGCDRLTLGQYLPPSLSHLPVV---------KYWTPEEFNTLGNIARELGFS------HVRSGPLVRSSYHAAE........................................................................................................................................................ 288
22 -13.7002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  12  81.............................................................CTHNCIFCWRPMENFLGTEDPAFIVEESIKAQRKLLIGYKGNPTHAAISLSGEPML---PYMGDLVEEFHKR-----GFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPMGWERILRFLELMRDLPTRTVVRLTL--VKGENMHSPEKYAKLILKARPMFVEAKAYMFVG---YSRNRLTINNMPSHQDIREFAEALVKHLPGYHIEDEYEPSIMRDDVDPQGTGVEGRFIKH.................................................................................................................................................... 342
23 -13.6005ul2_A mol:protein length:744 OxsB protein  ali model follow..  262.................................NGISYVDESGEVKHNVAETVNFKEEVPTCDSRCTFC---PRDHKLRSWRPLSVEQTLKQLDDILRAGKHFNIKPHIFIGELPNGTEAQRIIDICEGLLKR---EEKIKFDFAARADSVYEKMWHYCALAGADRIFIGVESGSNQQLKRYGKGTTSEQNIIALRLVSALGINLRIGFIMFDQLMKGLDNLKENLDFLERTDAL-MKPIDIGDMTYEELYDKLLNDKEFIEKHTIVSYMLASMEILMNTPYSRM............................................................................................................................................................................ 555
24 -12.5006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  13  22..........KILRKQRYQIDGHTAVKLCGWVRKKMLEDKNCYKSKFYGIETHRCIQCTPSCQQNCIFCDISQIKEPKWEEPEVVYEKILARVGEKKFKEALEPKHVAISLSGEPTL---PYLDELIKIFHKN-----GFTTFVVSN------ILTDVIEKIEPTQLYISLDAYDLDSYRRICGGKKWESILNTLDILKEKKRTCIRTTLIRGY-----DDILKFVELYERADVHFIELKSYMHVG---YSQKRLKKEDMLQHDEILKLAKMLDENS.................................................................................................................................................................................... 298
25 -12.3004m7s_A mol:protein length:269 BtrN  ali model follow..  12  2................................................DKLFSMIEVEV-QCNRTCWYCPNSVSKRKETGEMDALYKTLMEQLSSLD------FAGRISFHFGEP--LLCKNLDLFVGMTTEY---IPRARPIIYTNGDFLTEKRLQTLTELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVV...................................................................................................................................................................................................................................................................... 140
26 -12.1004m7t_A mol:protein length:270 BtrN  ali model follow..  13  19...................................................FSMIEVEV-QCNRTCWYCPNSVSKRKETGEMDALYKTLMEQLSSLD------FAGRISFHFGEP--LLCKNLDLFVGMTTEY---IPRARPIIYTNGDFLTEKRLQTLTELGIQKFIVTQHAGAKHKFRGVYDQLAGADKEKVV...................................................................................................................................................................................................................................................................... 154
27 -11.3002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model follow..  11  65..........SLIDPNDPNDPRKQAIPTALELNKAAADLE--DPLHEDTDSPVPGLTHTDMCSMYCRHCTRRRFAGQSDDSMPM------ERIDKAIDYIRNTPVRDVLLSGGDALLVSDETLEYIIAKLREHVEIVRIGSRTPVVLPQRITPELVNMLKKY--HPVWLNTHFNHPNEIT--------EESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKG--------IEIIEGLRGHT----------SGYCVPTFVVDAPGGGGKT....................................................................................................................................................... 338
28 -10.7005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  11  40.....................................................TMFVRTAGCDYSCSWCD--SAFTWDGSAKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPAL--LKQLDAFIELLKEN-----NIRAALETQ-GTVYQDWFTLIDDLTIS--SSKMVTNFQKLDHILTSIFNDEDLEFAKTVHKRYPGIPFYLQVGND-DQSLIAHLLGKYEALVDKVAVDAELNLVRVLPQL................................................................................................................................................................................................................. 246
29 -9.8704njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  11  37.....................................................AVFCRFAGCNLWSGREE-FVGTDGENGGKFKDADALVATIAGLWPAGEA--HRFVVCTGGEPMLQLDQPLVDALH--------AAGFGIAIETNDAPLVVTKGNELKVVIPQDNQRLADYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKRHPQWRLYLNIP.................................................................................................................................................................................................................................................. 224
30 -9.2303c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  10..........................................ESCGTVDGPGIRFITFFQGCLMRCLYCDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGG-----VTASGGEA-ILQAEFVRDWFRACKK-----EGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGW-SDDDDSAHRLGEFTRDMGNEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHK.............................................................................................................................................................................. 242

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.