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Query: 1per_L mol:protein length:69 PROTEIN (434 REPRESSOR), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSNVRLast
1 -43.5001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model  100  1SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSNVR 69
2 -40.4001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  49  3TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYGTKRGK.. 69
3 -39.8002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  98  1SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGT...... 63
4 -38.5001sq8_A mol:protein length:64 dh434  ali model follow..  76  2LMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAKRPRFLPELARALGVAVDWLLNGA...... 64
5 -33.1001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  31  5LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETPNGENLLALSKALQCSPDYLLKGDLSQT.. 72
6 -32.2005a7l_A mol:protein length:80 CI  ali model follow..  23  4DTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQPDQNRIYLLAKTLGVSEAWLMGFDVP.... 78
7 -31.7003zhm_A mol:protein length:79 CI  ali model follow..  23  3DTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQPDQNRIYLLAKTLGVSEAWLMGRS...... 75
8 -31.4003zhi_A mol:protein length:83 CI  ali model follow..  20  5DTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQPDQNRIYLLAKTLGVSEAWLMGRS...... 77
9 -31.3001utx_A mol:protein length:66 CYLR2  ali model follow..  20  2.IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKNPSLQLALKIAYYLNTPLEDIFQWQPE.... 66
10 -31.3002xiu_A mol:protein length:66 CYLR2  ali model follow..  20  2.IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKNPSLQLALKIAYYLNCPLEDIFQWQPE.... 66
11 -31.2003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  21  10MMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSPSLDMLVKVAELLNVDPRQLINGKIK.... 75
12 -31.1002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  20  2ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETPVVVKYIAFLRSKGVDLNALFDRIIVNKLE 71
13 -30.2003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  25  2.LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGHAPDFEMANRLAKVLKIPVSYLYTPEDDLA.. 72
14 -30.2003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  21  8KIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVPSLETLFDIAEALNVDVRELIVSTKR.... 73
15 -30.1003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  16  9QFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETPDIEKLIRLATYFHLSIDELVGYVQEDK.. 76
16 -30.1003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  25  17NAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTIKDSLLSKYMSAFNVKYDDIFLGNEYEN.. 84
17 -29.7001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  28  2.IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.. 69
18 -29.7004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  27  2.LGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYEREHSPNMRTSEQLAMVLQVPMAYLYCPEDELA.. 72
19 -29.5002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  23  12QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDAKNASPE.. 79
20 -29.4004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  27  10QLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDAK....... 72
21 -28.6002l49_A mol:protein length:99 C protein  ali model follow..  17  4TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGSTPPTDVMMNILQTPQFTKYTLWFMTNQIAPE 73
22 -28.5002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  17  9IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAPRMGKVQALADYFNINKSDLIEDKKLNI.. 76
23 -28.4001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  23  13EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAPNNQVLGKIERAIGLKLRGKDIGK...... 76
24 -28.1005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  23  15QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDTKNASPE.. 82
25 -27.9002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  26  10DYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLPTISQARQLEKILGIKLVTPLENNEESEKE 79
26 -27.8002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  25  2.IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSVSTELIDIICQKFNVSYVDIVGEDKMLN.. 68
27 -27.6005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  16  11NMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENFPIYLLLHFYIEGQITDRQLADLRGKIR.. 79
28 -27.0003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  28  5.IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.. 72
29 -26.8003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  22  12ALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKQHPSLQVLYDLVSLLNVSVDEFFLPASSQV.. 79
30 -26.2001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  27  18RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINANAYNAALLAKILKVSVEEFSPSIARE... 84
31 -26.1004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  19  43SLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGEDVYISTVFKILDGLGIDIVSAQTSDTETN.. 109
32 -25.7002b5a_A mol:protein length:77 C.BclI  ali model follow..  22  11.FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGRNISLINIHKICAALDIPASTFFRKMEEEN.. 77
33 -25.7003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  25  12RLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINANAYNAALLAKILKVSVEEFSPSIARE... 78
34 -25.4002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  26  8QLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGRAVTVQRLAELADFYGVPVQELL......... 70
35 -25.3001y7y_A mol:protein length:74 C.AhdI  ali model follow..  24  13KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGRNVSLVNILKLATALDIEPRELFC........ 74
36 -25.1002jvl_A mol:protein length:107 TrMBF1  ali model follow..  18  34EVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTAPDQNILSKMERVLNVKLRGANIGAPRLGPK 105
37 -24.7001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  30  17RLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINANAYNAALLAKILKVSVEEFSPSIARE... 83
38 -24.6002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  21  10CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFRRLDALELFELLEVVASRLGLPM......... 70
39 -24.5003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  17  8.VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSPTITTIRKVCGTLGISVHDFFDFPPYNEVE 77
40 -24.5004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  25  30EIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKQLDIMIAILMALDLTEQIDLFI......... 90
41 -24.3004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  20  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 80
42 -24.2004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  20  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 80
43 -24.1005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  16  19IMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQCCDIQLAHRICDTLGISHEYANELTSIPL.. 86
44 -24.0004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  20  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNANLTIKSLELIMKGLEVSDVVFFEMLIKEILK 80
45 -24.0004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  20  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNRNLTIKALELIMKGLEVSDVVFFEMLIKEILK 80
46 -23.9004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  20  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 80
47 -23.8003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  19  14ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENARRLDVIEFMDFCRGIGTDPYALLSKLEAM... 80
48 -23.5003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  20  22KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 91
49 -23.2003fya_A mol:protein length:99 Regulatory protein  ali model follow..  20  22KVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNRNLTIKSLELIMKGLEVSDVVFFEMLIKEILK 91
50 -23.1002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  16  16RLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRTPAFFTIAAVARVLDLSLDDVAAVVTFG... 81
51 -23.0003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  22  22.LAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKWNIALSNIEKMAAALGVAAYQLLLPPQERL.. 88
52 -22.7003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  26  62AGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSQSLQDKTVQKLANALGVSPLEVRAAFERRY.. 129
53 -22.3003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  26  28ALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGKEVSSELLASVCHALGASVADVLIEAAGSM.. 95
54 -22.2001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  25  10GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGTLTQLGRIAHVLGTSIGALTPPAGNDL.. 78
55 -22.2005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  20  10VIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGKEASSELLSAICDALDVPLSRVLTDAGESMAR 79
56 -22.1002fjr_A mol:protein length:189 Repressor protein CI  ali model follow..  17  9DVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGEGEA... 72
57 -21.9004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  11  13TLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQPLPEQAARVVAEKLDLDEDAIRLLQTIPL.. 80
58 -21.8003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  20  14YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRRRLDVIEFAKWMAACEGL.............. 69
59 -21.6001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  13  13DLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQALPADAARLVGAKLDLDEDSILLLQMIPL.. 80
60 -21.2002qfc_A mol:protein length:293 PlcR protein  ali model follow..  20  5KLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVPSMDILQGIAAKLQIPIIHFYEVLIYSDIE 73
61 -21.0006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  14  242ASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKLPTFDELKIIAKALNVNSRDLMPNDLTES.. 309
62 -20.8003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  16  7.DPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEEPDPAAATALAEALSVEPSQLAADAHRNL.. 74
63 -20.5003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  27  17RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINLNAYNAALLAKILKVSVEEFSPSIARE... 83
64 -20.3006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  25  237DHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPRAEWPELSALAEALGVSVRELLVPHTTTE.. 304
65 -20.1001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  24  11QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESPTIATLWKIASGLEASFSAFFANDPQ.... 76
66 -19.7003fmy_A mol:protein length:73 HTH-type transcriptional regulator MQSA (ygiT/b3021)  ali model follow..  19  13..PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELL.......... 69
67 -19.6005fd4_A mol:protein length:324 ComR  ali model follow..  14  24EFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASPTFSKIQYIATRLGMGLYELMPDYVSLPER 94
68 -19.3005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  23  6SIGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESPSLDRLSYIAKRLGKSMTELLDQDNITIPD 76
69 -19.0005j9i_A mol:protein length:104 Antitoxin igA-2  ali model follow..  17  42..PDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNGQAVTLLKLVQRHPETL.......... 98
70 -18.2002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  11  7DIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKNGDNERVSQTLQRW................. 59
71 -18.1003tyr_A mol:protein length:88 Transcriptional regulator  ali model follow..  12  21...NKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGDIIEALPE.... 82
72 -17.9002ppx_A mol:protein length:99 Uncharacterized protein Atu1735  ali model follow..  17  32..MPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGT.......... 88
73 -17.8002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  22  12QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDSLESLIDMITSIGLKVE............ 70
74 -17.8001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  10  5..ALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPSPEIIARLKEMKARRQRRI.......... 64
75 -17.5005y69_A mol:protein length:151 chain A  ali model follow..  16  4.TIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKNKYTVSILRSLSMISGLSVSDVLFELEDIE.. 71
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205