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Query: 1pxv_A mol:protein length:183 cysteine protease, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GEFDQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGYLast
1 -90.5001pxv_A mol:protein length:183 cysteine protease  ali model  100  1GEFDQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 177
2 -82.6001y4h_A mol:protein length:188 cysteine protease  ali model follow..  99  9...DQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 182
3 -79.1001cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  46  2....NEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVE-SRNGMHAGHAMAVVGNAKLNNGEVIIIWNPWDNGFMTQDAKNNVIPVSNGDHYQWYSSIYGY 174
4 -66.5001x9y_A mol:protein length:367 cysteine proteinase  ali model follow..  99  186...DQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 359
5 -32.7003erv_A mol:protein length:236 putative C39-like peptidase  ali model follow..  10  26...FNRDEKVILSNVPFIQQLPELDRCEVTSLAMMLQYAGIT--VDKMKLANEI-GNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITETNNGDVSITYNEHCVVLIGYDQ----ESVYIRDPLKDSLDVKVPREKFEQ-------AWVQM.... 216
6 -25.2003ois_A mol:protein length:291 Cysteine protease  ali model follow..  8  49...AALPPKVDLTPPFQVYDQGRIGSCTANALAAAIQFEQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSKNDTLEGGHAVLCVGYDD--EIRHFRIRNSWGNN--------------------VGEDGYFW 262
7 -23.1002btw_A mol:protein length:254 ALR0975 PROTEIN  ali model follow..  8  42GELLTSRSREDFFPLMQFVTQVNQAYCGVASIIMVLNSLGINAPFTQDNFFSNEKTKIAPEVVARQGMTLDELGRLIASYGVKVKVNASDTNIEDFRKQVQDGNFVIVNYLRKEIGQ--ERGGHISPLAAYNEQTD--RFLIMDV................................ 203
8 -22.5006a0n_A mol:protein length:343 Lpg2622  ali model follow..  9  68......RKVKLGMQLTPVLDQGYHGSCVTFAVTAAIDAADYISQLCNLELGSYLAIHDKAKASGWNGSFGYWVLQQISEYGIISQNYDMNQIVYQIKEELAKGNRLTIGMLLDVFMNGMIYAGHELVITGYDDDVNKGVFTLRNSWSKF--------------------AGDQGDYY 314
9 -21.1003k8u_A mol:protein length:156 Putative ABC transporter, ATP-binding protein ComA  ali model follow..  11  10...................PQIDTRDCGPAVLASVAKHYGSNYSIAYLR---------ELSKTNKQGTTALGIVEAAKKLGFETRSIKADMTLFDYND----TYPFIVHVIKGK------RLQHYYVVYGSQNNQ---IIGDPDPSVKVTRMSKERFQS---------EWTGLAI.. 136
10 -17.9004d8b_A mol:protein length:261 Streptopain  ali model follow..  10  47..........................CVATATAQIMKYHNRESNVQKMAISELMADDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRSEAQIDKELSQNQPVYYQ-------GVGKVGGHAFVIDGADGRN---FYHV------------------------NWGWGGVSDGF 221
11 -17.4003bba_A mol:protein length:251 interpain A  ali model follow..  12  32...............PKTKKGRLITGCVATATAQVLNYFGNYTEAEANAVATLMLHQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDVFSELTKGHPLIYG---VSPGSMGQDAGHAFVIDGYNKAG-----------------------------SVNWGWNGDVDGY 220
12 -17.0003zua_A mol:protein length:142 ALPHA-HEMOLYSIN TRANSLOCATION ATP-BINDING PROTEIN HLYB  ali model follow..  8  7...................DSCHKIDYGLYALEILAQYHNVSVNPEE----------KHRFDTDGTGLGLTSWLLAAKSLELKVKQVK--KTIDRLNFI---SLPALVWR----------EDGRHFILTKVSK-EANRYLIFDLEQRNPRVLEQSEFEA---------LYQGHII.. 128
13 -16.5001dki_A mol:protein length:371 PYROGENIC EXOTOXIN B ZYMOGEN  ali model follow..  9  165..........................SVATATAQIMKYHNRESNVQKMAISELMADDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGEAQIDKELSQNQPVYY-------QGVGKVGGHAFVIDGADGRN---FYHV------------------------NWGWGGVSDGF 339
14 -16.4003bb7_A mol:protein length:321 interpain A  ali model follow..  13  116..........................AVATATAQVLNYFGNYTEAEANAVATLMLMQYGGPNEGSGAYMTDCAAGLRTYFGFTDAEYITRANYTDVFSELTKGHPLIYG---VSPGSMGQDAGHAFVIDGYNKAG---LVSV------------------------NWGWNGDVDGY 293
15 -16.2004bpv_A mol:protein length:225 CATHEPSIN S  ali model follow..  11  20..............VTEVKYQGSCGACWAFSAVGALE-TGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEADAS-PFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGHGVLVVGYGTLDGKDYWLVKNSWGLN............................ 197
16 -15.7001pvj_A mol:protein length:368 pyrogenic exotoxin B  ali model follow..  9  162..........................CVATATAQIMKYHNRESNVQKMAISELMADDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGEAQIDKELSQNQPVYY-------QGVGKVGGHAFVIDGADGRN---FYHV------------------------NWGWGGVSDGF 336
17 -15.7005jt8_A mol:protein length:333 Blo t 1 allergen  ali model follow..  13  125..............LTRIRQQGSCGSCWAFAAAGVAE-KQQSIELSEQELVDCTYNRYDPSYQCNGSGYSTEAFKYMIRTGLVEERLRYHSSDEDVMYTIQQHGPVVIYMHGSNNYFRNLGNGHAVILVGWGTVQGVDYWIIRNSWGTG--------------------WGNGGY.. 312
18 -15.5001yal_A mol:protein length:218 CHYMOPAPAIN  ali model follow..  14  13..............VTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGHAVTAVGYGTSDGKNYIIIKNSWGPN............................ 184
19 -15.4001gec_E mol:protein length:216 GLYCYL ENDOPEPTIDASE  ali model follow..  13  13..............VTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQNGIHLRVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGHAVTAVGYGKSGGKGYILIKNSWGPG............................ 184
20 -15.1005t6u_A mol:protein length:215 Cathepsin K  ali model follow..  14  13..............VTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGHAVLVVGYGTQKGSKHWIIKNSWGES............................ 187
21 -15.0001deu_A mol:protein length:277 PROCATHEPSIN X  ali model follow..  10  41.DWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGEGGNDLSVWDYAHQHGIPDETYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGNHVVSVAGWGISDGTEYWIVRNSWGEP--------------------WGER--GW 246
22 -15.0001pci_A mol:protein length:322 PROCARICAIN  ali model follow..  12  119..............VTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGGAVTAVGYGKSGGKGYILIKNSWGTA--------------------WGEKGY.. 296
23 -14.9003b79_A mol:protein length:129 Toxin secretion ATP-binding protein  ali model follow..  8  1....................SNAMKDPLLNSLIYVSRYYG--LANSPEALVNGL-------PLSDGKLTPFLLPRAAERAGLVAKENR--AELEKISSLI----PAILVLK----------GGDSCVLNSINMETREAEVTTLESGMVPISIPLED..................... 112
24 -14.9003h7d_A mol:protein length:215 Cathepsin K  ali model follow..  10  13..............VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGHAVLAVGYGESKGNKHWIIKNSWGEN............................ 187
25 -14.8002f7d_A mol:protein length:215 Cathepsin K  ali model follow..  10  13..............VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGHAVLAVGYGIQKGNKHWIIKNSWGES............................ 187
26 -14.8001vsn_A mol:protein length:215 Cathepsin K  ali model follow..  10  13..............VTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGHAVLAVGYGIQAGNKHWIIKNSWGES............................ 187
27 -14.8005tdi_A mol:protein length:215 Cathepsin K  ali model follow..  10  13..............VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGHAVLAVGYGIQKGNKHWIIKNSWGEN............................ 187
28 -14.5001m6d_A mol:protein length:214 Cathepsin F  ali model follow..  12  13..............VTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLG--QDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHG-DHAVLLVGYGQRSDVPFWAIKNSWGTD............................ 186
29 -14.5003oqc_A mol:protein length:481 Ufm1-specific protease 2  ali model follow..  7  282SMICVVQGTYAYHHYMQDRIDDNGWGSAYRSLQTICSWFRHQGYTERQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLGVTSKILNQGSEMASQGRELNVGTPVMVG-----------GGVLAHTILGVAETTGQIKFLILDP------HYTGAEDLQVMLEKGWCGWKDAYYNL 466
30 -14.4006ex8_A mol:protein length:217 Cysteine protease  ali model follow..  11  13..............VTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYDAIAAYLAENGPLAIAVDATSFMDYNGG-DHGVLLVGYNDASNPPYWIIKNSWSNM............................ 187
31 -14.3004pi3_A mol:protein length:216 Cruzipain  ali model follow..  14  14..............VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAQIAAWLAVNGPVAVAVDASSWMTYTGG-DHGVLLVGYNDSAAVPYWIIKNSWTTQ............................ 188
32 -14.3002fye_A mol:protein length:217 cathepsin S preproprotein  ali model follow..  13  13..............VTEVKYQGSCGACWAFSAVGALE-TGKLVSLSAQNLVDCSTKKYGNKGC-NGGFMTTAFQYIIDNKGIDSDAS-PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 189
33 -14.3003iut_A mol:protein length:221 Cruzipain  ali model follow..  14  13..............VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAQIAAWLAVNGPVAVAVDASSWMTYTGG-DHGVLLVGYNDGAAVPYWIIKNSWTTQ............................ 187
34 -14.2004p6e_A mol:protein length:230 Cathepsin S  ali model follow..  13  19..............VTEVKYQGSCGACWAFSAVGALE-TGKLVSLSAQNLVDCSTEKYGNKGC-NGGFMTTAFQYIIDNKGIDSDAS-PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 195
35 -14.2001mir_A mol:protein length:322 PROCATHEPSIN B  ali model follow..  10  66.SFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMS--RVNVEVSAEDLLTCCGIQCGDG----NGGYPSGAWNFWTRKGLVSTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGGHAIRILGWGIENGVPYWLVANSWNAD--------------------WGDNGF.. 292
36 -14.1003hhi_A mol:protein length:325 Cathepsin B-like cysteine protease  ali model follow..  12  75.SFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMS--VQDVHISAGDLLA-----CSDCGDGCNGGDPDRAWAYFSSTGLVSDTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGGHAVRLVGWGTSNGVPYWKIANSWNTE--------------------WGMDGY.. 291
37 -14.0004hwy_A mol:protein length:340 Cysteine peptidase C (CPC)  ali model follow..  13  97.SFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMS--VQDVHISAGDLLA-----CSDCGDGCNGGDPDRAWAYFSSTGLVSDTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGGHAVRLVGWGTSNGVPYWKIANSWNTE--------------------WGMD--GY 313
38 -14.0005fpw_A mol:protein length:321 PRO CATHEPSIN B S9  ali model follow..  13  72.SFDSAEKWPNCPTIREIADQSACRASWAVSTASVIS--VQQLRISAAHLLS-----CKQCGGGCKGGFPGFAWRYYVEYGIASSTYLLLHGEEDYKRELYFNGPFVAVFYVYTDLFAYKSGGTAVKVVGWGKLNGTPYWKVANTWDTD--------------------WGMDGY.. 288
39 -14.0005qbu_A mol:protein length:223 Cathepsin S  ali model follow..  13  14..............VTEVKYQGSCGASWAFSAVGALE-TGKLVSLSAQNLVDCSTEKYGNKGC-NGGFMTTAFQYIIDNKGIDSDAS-PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 190
40 -14.0001iwd_A mol:protein length:215 ERVATAMIN B  ali model follow..  11  13..............VNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGINGFQRVTRNNESALQSAVASQ-PVSVTVEAAGAPFQHYSSGHGVVIVGYGTQSGKNYWIVRNSWGQN............................ 183
41 -14.0001gmy_A mol:protein length:261 CATHEPSIN B  ali model follow..  13  5.SFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVANSWNTD............................ 225
42 -13.9001pbh_A mol:protein length:317 PROCATHEPSIN B  ali model follow..  12  67.SFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSGSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVANSWNTD--------------------WGDNGF.. 293
43 -13.9004yyw_A mol:protein length:220 Ficin isoform D  ali model follow..  13  13..............VDPIRDQGKCGSCWVFSVTVVVE-TDTLPSLSEQELLD---APSYKDLGCKGGWMDKAYDYIIKDRGITSEYEDVPADNEDALKKAVANQPVSVAIDASSAAVKEYSSGHAVVVVGYGTESGVNYWLVRNSWGTK............................ 187
44 -13.9001ito_A mol:protein length:256 Cathepsin B  ali model follow..  14  4.SFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAIS--RVNVEVSAEDMLTCCGGECGDG----NGGFPSGAWNFWTKKGLVSSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVGNSWNTD............................ 224
45 -13.9003cbj_A mol:protein length:266 Cathepsin B  ali model follow..  14  10.SFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVANSWNTD............................ 230
46 -13.8004yyu_A mol:protein length:222 Ficin isoform C  ali model follow..  12  13..............VNPIRNQGRCGSCWAFSVVVVVE-TDELPSLSEQQLVD---ATSYKNLGCSGGWMTKAYDYIIKNGGITSQYEHVPRNNENALKKAVANQPVSVTIEAGGRAFELYKSGHAVVAIGYGSENDVDYWLVRNSWGTN............................ 187
47 -13.8004yyq_A mol:protein length:217 Ficin isoform A  ali model follow..  13  13..............VNPIRNQGQCGSCWAFSAVAAVE-TGQLLSLSEQQLLD---AQSYKNLGCQGGWVNKAFEYIIQNRGITSQYQYVPSNNENALKNAVANQPVSVAVEAAGRAFQLYKSGHAVVLIGYGKYNGVDYWLLRNSWGTN............................ 185
48 -13.8005xda_A mol:protein length:565 Ufm1-specific protease  ali model follow..  6  371GEITTVNGPYNYHHYMQDGIDDSGWGSAYRSFQTIWSWFILNGYTDKQQALVDIQDKQAKFVGSRQWIGSTEISFVLNELKLECRFINSGAEVVERVRELTSGTPVMIG-----------GNMLAHTILGVDDTTGETKFLVLDP------HYTGSEDIKTITSKGWCAWKDHFYNM 555
49 -13.7001cqd_A mol:protein length:221 PROTEIN (PROTEASE II)  ali model follow..  14  15..............VVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGIDSYENVPSHNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGHALTVVGYGTENDKDFWIVKNSWGKN............................ 186
50 -13.7004yyr_A mol:protein length:222 Ficin B  ali model follow..  12  13..............VNPIRNQGRCGSCWAFSVVVVVE-TDELPSLSEQQLVD---ATSYKNLGCSGGWMTKAYDYIIKNGGITSQYEHVPRNNENALKNAVANQPVSVTIEAGGRAFELYKSGHAVVAIGYGSENDVDYWLVRNSWGTN............................ 187
51 -13.6002act_A mol:protein length:220 ACTINIDIN PRECURSOR  ali model follow..  12  13..............VVDIKSQGECGGCWAFSAIATVE-SGSLISLSEQELID---GRTQNTRGCDGGYITDGFQFIINDGGINTEYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGHAIVIVGYGTEGGVDYWIVKNSWDTT............................ 187
52 -13.6001aec_A mol:protein length:218 ACTINIDIN  ali model follow..  14  13..............VVDIKSQGECGGCWAFSAIATVE-TGVLISLSEQELID---GRTQNTRGCNGGYITDGFQFIINNGGINTEYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGHAVTIVGYGTEGGIDYWIVKNSWDTT............................ 187
53 -13.6005z5o_A mol:protein length:335 Cathepsin K  ali model follow..  10  127..............VTPVKNQGQCGSSWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVATDASLTSFQFYSKGHAVLAVGYGIQKGNKHWIIKNSWGEN............................ 301
54 -13.6001nb3_A mol:protein length:220 Cathepsin H  ali model follow..  10  14..............VSPVKNQGSCGSCWTFSTTGALE-TGKMLSLAEQQLVD---AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDT-TMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGNHAVLAVGYGEENGIPYWIVKNSWGPQ............................ 191
55 -13.6002c0y_A mol:protein length:315 PROCATHEPSIN S  ali model follow..  14  111..............VTEVKYQGSCGAAWAFSAVGALE-TGKLVSLSAQNLVDCSTEKYGNKGC-NGGFMTTAFQYIIDNKGIDSDAS-PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 287
56 -13.5003p5u_A mol:protein length:220 Actinidin  ali model follow..  13  13..............VVDIKDQGQCGSCWAFSTIAAVE-TGDLISLSEQELVD---GRTQNTRGCDGGFMTDGFQFIINNGGINTEYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGHAVTIVGYGTEGGIDYWIVKNSWGTT............................ 187
57 -13.4003rvw_A mol:protein length:222 Peptidase 1  ali model follow..  17  22..............VTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH---HGDTIPRGIEYIQHNGVVQESY-YPPNVNKIREALAQTHAIAVIIGIKDLDAFRHYDGHAVNIVGYSNAQGVDYWIVRNSWDTN............................ 195
58 -13.3002wbf_X mol:protein length:265 SERINE-REPEAT ANTIGEN PROTEIN  ali model follow..  9  22..............NLQVEDQGNCDTSWIFASKYHLE--YEPTKISALYVAN---YKGEHKDRCDEGSSPMEFLQIIEDYGSERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGDHAVNIVGYSEGEKKSYWIVRNSWGPY--------------------WGDEGY.. 236
59 -13.2001khp_A mol:protein length:212 Papain  ali model follow..  13  13..............VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGHAVAAVGY----GPNYILIKNSWGTG............................ 180
60 -13.2004i04_A mol:protein length:323 Cathepsin B-like peptidase (C01 family)  ali model follow..  11  75.SFDSRKKWPRCKSIATIRDQSRCGSSWAFGAVEAMS--KQNVELSAVDLLS-----CESCGLGCEGGILGPAWDYWVKEGIVTSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGGHAIRIIGWGVENKAPYWLIANSWNED--------------------WGENGY.. 301
61 -13.2003ioq_A mol:protein length:213 CMS1MS2  ali model follow..  14  13..............VTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANSGIHLRVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGHAVAAVGY----GNDYILIKNSWGTG............................ 180
62 -13.2001bp4_A mol:protein length:212 PAPAIN  ali model follow..  14  13..............VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGHAVAAVGY----GPNYILIKNSWGTG............................ 180
63 -13.2003qt4_A mol:protein length:329 Cathepsin-L-like midgut cysteine proteinase  ali model follow..  11  121..............VSEVKDQGQCGSSWSFSTTGAVE-RGRLTSLSEQNLID----SSSYGNAGCDGGWMDSAFSYIHDYGIMSESA-PSGDENSLADAVGQAGPVAVAIDATDELQFYSGGNHGVLVVGYGSDNGQDYWILKNSWGSG--------------------WGESGY.. 301
64 -13.2002o6x_A mol:protein length:310 Secreted cathepsin L 1  ali model follow..  11  104..............VTEVKDQGNCGSGWAFSTTGTME-ERTSISFSEQQLVD----SRPWGNNGCGGGLMENAYQYLKQFGLETESS-HSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGNHAVLAVGYGTQGGTDYWIVKNSWGLS............................ 278
65 -13.1003d6s_A mol:protein length:223 Allergen Der f I  ali model follow..  15  23..............VTPIRMQGGCGSCWAFSGVAATE-RNTSLDLSEQELVD-------ASQHGCHGDTIPRGIEYIQQNGVVEERS-YPPDVKQIREALTQTHAIAVIIGIKDLRAFQHYDGHAVNIVGYGSTQGDDYWIVRNSWDTT............................ 196
66 -13.1003qj3_A mol:protein length:331 Cathepsin L-like protein  ali model follow..  11  122..............VSPVKNQGSCGSSWAFSSTGAIEMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGTHAVLIVGYGNENGQDYWLVKNSWGDG--------------------WGLDGY.. 303
67 -13.0001jqp_A mol:protein length:438 dipeptidyl peptidase I  ali model follow..  11  221..............VSPVRNQESCGSCYSFASLGMLE--SQTPILSPQEVVS-----SPYAQGCDGGFPYLIAGKYAQDFGVVEENFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGNHAVLLVGYDPVTGLDYWIVKNSWGSQ--------------------WGES--GY 413
68 -13.0004ry2_A mol:protein length:730 ABC-type bacteriocin transporter  ali model follow..  9  17...................RQYDLTDCGAACLSSIAQYYGLKMSLAKIR---------EMTGTDTQGTNAYGLIHAAKQLGFSAKGVK--ASKEDLLKDFR--LPAIANVIVDN------RLAHFVVIYSIKN----RIITVADPGKGIVRYSMDD..................... 130
69 -12.9002bdz_A mol:protein length:214 Mexicain  ali model follow..  13  13..............VTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGHAVTAVGY----GKTYLLLKNSWGPN............................ 180
70 -12.9004ci7_A mol:protein length:470 CELL SURFACE PROTEIN (PUTATIVE CELL SURFACE-ASSOCIATED CYSTEINE PROTEASE)  ali model follow..  12  77..............TTPAKNQGSLNTAWSFSGMSTLE--YGTYDLSEEHLRWWATGGKYGWNLDSGSSNVTAIGYLTAWAGPKLEKDI-NKDKETVKNAIMQYGSVTSGYAHYSTTNKRAPLNHAVAIVGWDDNESNGAWLVKSSWGEF............................ 272
71 -12.9006czk_A mol:protein length:335 Pro-cathepsin H  ali model follow..  9  129..............VSPVKNQGACGSCWTFSTTGALE-TGKMLSLAEQQLVDCAQDFNNHG---QGGLPSQAFEYILYNKGIMGEDT-TIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGNHAVLAVGYGEKNGIPYWIVKNSWGPQ--------------------WGMNGY.. 312
72 -12.8003pdf_A mol:protein length:441 Dipeptidyl peptidase 1  ali model follow..  11  222..............VSPVRNQASCGSCYSFASMGMLE--SQTPILSPQEVVS-----SQYAQGCEGGFPYLIAGKYAQDFGLVEEAFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGNHAVLLVGYDSASGMDYWIVKNSWGTG--------------------WGEN--GY 414
73 -12.8002vhs_A mol:protein length:217 CATHSILICATEIN  ali model follow..  14  13..............VTPVKNQGQCGASYAFSATGALE-TGRLISLSEQNLVD---SGPQGNEGCNGGLMDYAFQYVQDNGGLDSEFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGHAMLVVGYFISNNQKYWLVKNSWGEE............................ 189
74 -12.7006mir_A mol:protein length:215 Ananain  ali model follow..  10  13..............VTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDCAVSYGCKGGWINKAYSFIISNKGVASAYTYVQRNNERNMMYAVSNQPIAAALDASGNFQHYKRGNHAIVIIGYQDSSGKKFWIVRNSWGAG............................ 183
75 -12.7002b1m_A mol:protein length:246 SPE31  ali model follow..  11  14..............ITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGILSNESTESEAESSLQSFVLEQ-PISVSIDAKDFHFYSGG-NHFVLIVGYGSEDGVDYWIAKNSWGED............................ 193
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.