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Query: 1s72_T mol:protein length:120 50S ribosomal protein L24P, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSALast
1 -63.9001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model  100  1MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDSA 120
2 -56.9005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  28  8VSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGR. 126
3 -56.0003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  32  5KCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSSK 124
4 -55.6005t2a_X mol:protein length:143 uL24  ali model follow..  33  5KCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSK 124
5 -54.8002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  31  8VSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKL. 126
6 -54.3005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  31  7VSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATT 126
7 -54.2003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  30  7KSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN 126
8 -52.9005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  35  1..GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRK........... 107
9 -52.5003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  30  7VTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127
10 -37.0001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  19  1...........................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATRVRKQIVDGKK. 103
11 -34.1004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  28  3......................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVRVKEAPLHASKVRPICPACGKPTRVRKKFLENGK. 94
12 -33.7004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  25  1........................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTEAAIHVSNVQLLDPKTNEPTRVGYKFVDGKK. 90
13 -33.0003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  24  1........................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKK. 90
14 -32.0003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  22  2.......................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKK. 92
15 -31.1005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  16  28SPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKHVKSIEAAIHSSNVMLILKEQEVADRVGHKILEDVR. 156
16 -30.6005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  20  56............................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGR. 157
17 -30.4005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  30  1........................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVVDSD-GKPTRIGYRVDEET.. 91
18 -30.2005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  30  1........................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVVDSDGKPTRVGYRIDDETGK. 93
19 -29.2004ce4_Y mol:protein length:216 MRPL24  ali model follow..  20  33...................RKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRYVGKSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGE. 142
20 -28.9003j7y_V mol:protein length:216 uL24  ali model follow..  20  42............................RPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRYIGKSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGE. 142
21 -25.9003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  11  27...LPHSEKFIKKSTPEFMKSDLKEVDEKTSFKS---EKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVPIPVSILGKDLRLVADIDDEKTPGKTRTVAVRD. 153
22 -13.1001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  23  167.............GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV----MISIFGRMTPVELDFDQVEKI.................... 248
23 -12.6005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  12  54.....................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD............................................ 92
24 -12.5004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  34  1..........................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNG........................................... 35
25 -12.4002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  24  120.......................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV----NVTIFGRETPVVLHVSEVEKIE................... 177
26 -12.2004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  25  81..................................TPKKIIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLE----LENAAVPIPITLPVEGVKIVSKHKD............... 147
27 -12.1002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  33  7.......................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV....................... 60
28 -12.1002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  25  2....................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDM..................................... 48
29 -12.1002ckk_A mol:protein length:127 KIN17  ali model follow..  20  66.....................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV............................................ 104
30 -12.0003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  31  88......................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQ............................................ 125
31 -12.0002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  26  18..........................................FKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSD............................................ 51
32 -11.7002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  26  6.......................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV----LVSIFGRETPVELTFGQVSKI.................... 62
33 -11.6005ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  35  130..........................................FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV....................... 180
34 -11.5001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  33  2.......................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV----MVTIFGRETPVELDFSQV....................... 55
35 -11.4006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  33  4.......................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV----SVSIFGRATPVELDFSQV....................... 57
36 -11.4005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  18  21.............................................NKTVKIRQGGYKGKIGIVKEANGDRFRVEL--------HNPNKTIPIPCSFLLIES................... 68
37 -10.6002xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  24  296.......................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN----VTIFGRETPVVLHVSEVEKI.................... 352
38 -10.5005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  19  36.................TVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG................................... 101
39 -10.5004ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  17  1..........................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLK............................................ 34
40 -10.4002e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  18  21.............................................GQTVRISQGPYKGYIGVVKDATESTARVEL--------HSTCQTISVDRQRLTTVG................... 68
41 -10.0005xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  18  550.............................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELHN--------PNKTIPIPCSFLLIESTH................. 599
42 -9.1402lcl_A mol:protein length:66 Transcriptional activator rfaH  ali model follow..  16  14..........................................PYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNL------NKEIKHSVKNTEFRKL.................... 66
43 -9.1005oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  12 1030.....................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDL........................................... 1069
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.