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Query: 1s7m_A mol:protein length:174 Hia, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TLGTGNNGAKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELAKGEVVKSNELast
1 -65.1001s7m_A mol:protein length:174 Hia  ali model  100  1TLGTGNNGAKTEINKDGLTITPANGAGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDEKGTDKQTPVVADNTAATVGDLRGLGWVISADKTTGGSTEYHDQVRNANEVKFKSGNGINVSGKTVNGRREITFELAKGEVVKSNE 174
2 -46.0003emf_A mol:protein length:116 Hia (Adhesin)  ali model follow..  44  42........................................................................................NEKNASDKLLVEDNTAATVGNLRKLGWVLSSKNGT--RNEKSQQVKHADEVLFEGKGGVQVTSTSENGKHTITFALA......... 116
3 -9.2803emi_A mol:protein length:116 Hia (Adhesin)  ali model follow..  23  54......................................................................................................TAKDVIDVNKTGWRIKTTDANGQNGD-FATVASGTNVTFASGNGTTATVTNGTDGITVKYDAK......... 116
4 -7.9504l0y_A mol:protein length:242 Runt-related transcription factor 1  ali model follow..  22  90......................................................................................................KVVALGDVPD-GTLVTV--MAGNDENYSAELRNANDLRFVGRSGLTITVFTN---RAIKITVD......... 171
5 -7.6203wts_A mol:protein length:205 Runt-related transcription factor 1  ali model follow..  20  32......................................................................................................KVVAKGDVPD-GTLVTV--MAGNDENYSAELRNANDLRFVGR-----SGRGKSFTLTITVFTNPPQVATYHR 106
6 -7.4302dg6_A mol:protein length:222 putative transcriptional regulator  ali model follow..  13  3............................................................................................LADLSKRSGVSTATIKYYLREGLLPPGRQVNATTAEYDE--DHLRRLRLV-RALIQVGKVPVATAREVLGHVDDDSL..... 76
7 -7.4205uz5_A mol:protein length:300 U1 small nuclear ribonucleoprotein 70 kDa homolog  ali model follow..  17  99..............................................................................................HIKDTDPYRTIFIGRLVKFGEIEKIDKITQKSKGYAKDPISSKMAEIGVHRGIQIKD------RICIVDIERGRTVKY.. 193
8 -7.3303jct_o mol:protein length:220 Ribosome biogenesis protein 15  ali model follow..  11  1............MVKSTSKTSTKETVTKQPTEEKPIQEKEELALETSSSSSDEEDEKDEDEIEGLAASDDEQSGTHKIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLAQFGDLLARNKKTGNSRHYG--------LEFVNKEDAMIAQESMNNYHLLQVRVLPKG...... 170
9 -7.2003nyy_A mol:protein length:252 Putative glycyl-glycine endopeptidase lytM  ali model follow..  19  140.............................................................................................YPVVSMTDGVVTEKGWLEKGGWRIGITAPTGAYFYYADPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGI.......... 221
10 -7.1305lnl_A mol:protein length:151 Hsf  ali model follow..  22  72......................................................................................................TAKAVIDVNKAGWRVKTTGANGQNDD-FATVASGTNVTFADGNGTTAETKANDGSITVKYNVKVADGLKL.. 142
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.