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Query: 1utx_A mol:protein length:66 CYLR2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPELast
1 -40.6001utx_A mol:protein length:66 CYLR2  ali model  100  1MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE 66
2 -40.5002xiu_A mol:protein length:66 CYLR2  ali model follow..  98  1MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE 66
3 -34.8003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  27  10MMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK 75
4 -34.3002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  20  3.LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIV 67
5 -34.1003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  24  9.IFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR 73
6 -33.7001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  19  5LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLS 70
7 -33.3003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  28  1MLIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDD 70
8 -32.2004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  22  1MLGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDE 70
9 -32.0005a7l_A mol:protein length:80 CI  ali model follow..  16  5.TSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGFDVP 78
10 -32.0003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  30  18.AMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEY 82
11 -31.9004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  27  11.LANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK... 72
12 -31.8003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  16  10.FAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQE 74
13 -31.6002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  25  9IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKL 74
14 -31.3001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  20  2.ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLNGTSD 65
15 -31.3003zhm_A mol:protein length:79 CI  ali model follow..  17  4.TSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGRS.. 75
16 -31.2002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  27  12QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNAS 77
17 -31.1003zhi_A mol:protein length:83 CI  ali model follow..  17  6.TSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLMGRS.. 77
18 -30.6001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  31  1MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 67
19 -30.6001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  21  14.VGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKP. 77
20 -30.5002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  27  11.YYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEE 75
21 -30.3002l49_A mol:protein length:99 C protein  ali model follow..  18  5.ISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQ 69
22 -30.1005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  27  15QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNAS 80
23 -30.0002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  25  1MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKM 66
24 -29.5001y7y_A mol:protein length:74 C.AhdI  ali model follow..  31  13KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF..... 73
25 -29.4002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  19  2.ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGK-TKRPRFLPELASALGVSVDWLLNGT.. 63
26 -29.3002b5a_A mol:protein length:77 C.BclI  ali model follow..  34  10KFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEE 75
27 -29.2001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  26  4.LSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGV-TKRPRFLFEIAMALNCDPVWLQYGTKR 67
28 -29.1005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  13  12.MAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFIYLLLHFYIEGQITDRQLADLRGK 77
29 -29.0001sq8_A mol:protein length:64 dh434  ali model follow..  20  3.MGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGK-AKRPRFLPELARALGVAVDWLL..... 61
30 -28.8003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  31  4MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 70
31 -28.5003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  21  13.LGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASS 77
32 -28.4004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  25  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76
33 -28.3002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  13  8QLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL..... 70
34 -28.2004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  25  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76
35 -28.0004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  25  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIK 76
36 -28.0004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  25  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 76
37 -28.0004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  25  11KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIK 76
38 -27.7004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  26  31.IGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE. 94
39 -27.4001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  10  19.LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 83
40 -27.2003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  25  22KVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 87
41 -27.2002jvl_A mol:protein length:107 TrMBF1  ali model follow..  18  35.VGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPR 101
42 -27.0003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  9  13.LKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 77
43 -27.0003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  25  21VLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQE 86
44 -26.8003fya_A mol:protein length:99 Regulatory protein  ali model follow..  24  22KVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIK 87
45 -26.5002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  23  11.LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPM..... 70
46 -26.3003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  16  7FVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRKRPTITTIRKVCGTLGISVHDFFDFPP. 72
47 -25.8003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  16  14ALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEA 79
48 -25.6001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  16  18.LKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFS..... 77
49 -25.2005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  20  20.MSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSI 84
50 -25.1003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  19  28ALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAG 93
51 -24.9005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  21  10VIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGE 75
52 -24.9003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  21  63.GGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFER 127
53 -23.8002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  22  17.LGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVA..... 75
54 -23.5004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  20  44.LGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE-DVYISTVFKILDGLGIDIVSAQTSDTE 107
55 -23.2001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  29  12.IANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ 76
56 -23.2006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  24  16.SGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDD 80
57 -23.0001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  24  11.FAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGN 76
58 -22.7003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  14  14YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL.......... 69
59 -22.6004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  11  14.LTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIR..... 73
60 -22.4001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  15  14.LADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQM. 77
61 -22.2002qfc_A mol:protein length:293 PlcR protein  ali model follow..  20  6.LGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIY 69
62 -22.1006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  9  238.HGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTT 302
63 -21.5003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  12  6IDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLAADAHR 72
64 -20.7005fd4_A mol:protein length:324 ComR  ali model follow..  18  25.FGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVS 90
65 -20.5002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  19  8.IRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKYNGDNERVSQTLQRW............. 59
66 -20.4001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  12  3MNALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRINAIVDK 70
67 -20.1005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  24  7.IGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNI 72
68 -19.5003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  10  18.LKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAR 82
69 -19.3005y69_A mol:protein length:151 chain A  ali model follow..  13  3MTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPNKYTVSILRSLSMISGLSVSDVLFELED 69
70 -18.9004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  21  5.LGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFVSTHSK 68
71 -18.8003fmy_A mol:protein length:73 HTH-type transcriptional regulator MQSA (ygiT/b3021)  ali model follow..  16  11VAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHTIKLLRVLDKHPELLNEI...... 72
72 -18.6002aw6_A mol:protein length:317 PrgX  ali model follow..  20  4.IGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRAGM 67
73 -18.4003tyr_A mol:protein length:88 Transcriptional regulator  ali model follow..  30  18VSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNEN--SLTVLLAICEYLNCDFGDIIEALPE 82
74 -18.3004yba_A mol:protein length:99 Regulatory protein C  ali model follow..  22  9MTPEICKASRALVNLTQKELALMAGIATPTIADFERGARKPHGNNLRSIIIAFE............ 62
75 -18.1005j9i_A mol:protein length:104 Antitoxin igA-2  ali model follow..  24  40ISPDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNAVTLLKLVQRHPETLSHIAE.... 103
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.