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Query: 1wog_A mol:protein length:305 agmatinase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVLLast
1 -106.0001wog_A mol:protein length:305 agmatinase  ali model  100  1MSGPAHLPYGGIPTFARAPLVQPDGDWQADVAALGVPFDIALGFRPGARFAPRALREASLRSVPPFTGLDGKTRLQGVTFADAGDVILPSLEPQLAHDRITEAARQVRGRCRVPVFLGGDHSVSYPLLRAFADVPDLHVVQLDAHLDFTDTRNDTKWSNSSPFRRACEALPNLVHITTVGLRGLRFDPEAVAAARARGHTIIPMDDVTADLAGVLAQLPRGQNVYFSVDVDGFDPAVIPGTSSPEPDGLTYAQGMKILAAAAANNTVVGLDLVELAPNLDPTGRSELLMARLVMETLCEVFDHVL 305
2 -92.6003nio_A mol:protein length:319 Guanidinobutyrase  ali model follow..  32  9LGGNEMPRFGGIATMMRLPHVQSAELDALDAAFVGVPLDIGTSLRSGTRFGPREIRAESVMIRPYNMATGAAP-FDSLNVADIGDVAINTFNLLEAVRIIEQEYDRILGHGILPLTLGGDHTITLPILRAIKKHGKVGLVHVDAHADVNDHMFGEKIAHGTTFRRAVEELLDCDRVVQIGLRAQGYTAEDFNWSRKQGFRVVQAEECWHKSMAEVREKVGGGPVYLSFDIDGIDPAWAPGTGTPEIGGLTTIQAMEIIRGC-QGLDLIGCDLVEVSPPYDTTGNTSLLGANLLYEMLCVLPGVV. 317
3 -92.3001gq6_A mol:protein length:313 PROCLAVAMINATE AMIDINO HYDROLASE  ali model follow..  28  4IDSHVSPRYAQIPTFMRLPHDPQPR--GYDVVVIGAPYDGGTSYRPGARFGPQAIRSESGLIHGVGIDRGPGT-FDLINCVDAGDINLTPFDMNIAIDTAQSHLSGLLKANAAFLMIGGDHSLTVAALRAVAEHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDELIDPAAMVQIGIRGHNPKPDSLDYARGHGVRVVTADEFGELGADLIREKVGQRPVYVSVDIDVVDPAFAPGTGTPAPGGLLSREVLALLRCV-GDLKPVGFDVMEVSPLYDHGGITSILATEIGAELLYQYARAH. 309
4 -91.9003nip_A mol:protein length:326 3-guanidinopropionase  ali model follow..  30  9LDAAEIPRFAGIPTFMRLPAFTDPA--ALQVGLIGVPWDGGTTNRAGARHGPREVRNLSSLMRKVHHVSRIAP-YDLVRVGDLGDAPVNPIDLLDSLRRIEGFYRQVHAAGTLPLSVGGDHLVTLPIFRALGRERPLGMVHFDAHSDTNDRYGDNPYTHGTPFRRAIEELLDPLRTVQIGIRGSVYSPDDDAFARECGIRVIHMEEFVELGLAEARRVVGAGPTYVSFDVDVLDPAFAPGTGTPEIGGMTSLQAQQLVRGL-RGLDLVGADVVEVSPPFDVGGATALVGATMMFELLCLLAESA. 314
5 -90.6004dz4_A mol:protein length:324 Agmatinase  ali model follow..  26  21YGSSIENTYAGVLSFMRRNYTRDLD--GVDVVVSGVPLDLATTFRSGARLGPSAVRAASVQLAELNPYPWGFDPFDDLAVIDYGDCWFDAHHPLSIKPAIVEHARTILQSDARMLTLGGDHYITYPLLIAHAQKKPLSLIHFDAHCDTWADDAPDSLNHGTMFYKAVKDLIDPKASVQVGIRTWN--------DDYLGINVLDAAWVHEHGLERIESIVGGRPAYLTFDIDCLDPAFAPGTGTPVAGGLSSAQALAIVRGL-GGVNLIGADVVEVAPAYDQSEITAIAAAHVACDLLCLWRQRK. 320
6 -88.7003lhl_A mol:protein length:287 Putative agmatinase  ali model follow..  26  4........................NYEESNLIVFGVGFDGTTSNRPGARFASSSMRKEFYGLETYSPFLDLD--LEDYNICDYGDLEISVGSTEQVLKEIYQETYKIVRDSKVPFMIGGEHLVTLPAFKAVHEYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRIWD-IVGDNKIFQFGIRSG--TKEEFKFATEEKHTYMEIGGID--TFENIVNMLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIKSNINIVGCDIVELSPDYDTTGVSTVIACKILRELCLIISDKI. 278
7 -86.7003pzl_A mol:protein length:313 Agmatine ureohydrolase  ali model follow..  25  6.NGREKDHASELRSIFSLKKIADAGYEEAKYVVFGIPFDNTSSYRRGSKYAPDSIRGAYVNLESYEYSYGID--LLASGMADLGDMEES-EDVEYVIDTVESVVSAVMSDGKIPIMLGGEHSITVGAVRALPK--DVDLVIVDAHSDFRSSYMGNKYNHACVTRRALD-LLGEGRITSIGIRSV--SREEFEDPDFRKVSFISSFDVKKNGIDKYIEEVKSRRVYISVDMDGIDPAYAPAVGTPEPFGLADTDVRRLIERL--SYKAVGFDIVEFSPLYD-NGNTSMLAAKLLQVFIASREKYY. 301
8 -83.2003m1r_A mol:protein length:322 Formimidoylglutamase  ali model follow..  23  12.EAGSSFKDRDVTKMSDLIATWD-GQDIKGPALIGVPLSKSSISHSGASFAPGTIRQALKHSSAYSAELGEH--VVSELLYDLGDIDIHVTDIVKSHHHIFQTMHALLSDHPVPLILGGDNSISYSTIKAIAQKGTTAVIQFDAHHDVRNTEDG-GPTNGTPFRRLLDEIIEGQHLIQLGIREFSNSQAYEAYAKKHNVNIHTMDMIREKGLIPTIKEIKTDFIFISVDMDVLDQSHAPGCPAIGPGGLYTDELLEAVKYIAQQPNVAGIEIVEVDPTLDFRDMTSRAAAHVLLHALKGMKLSPF 321
9 -79.6004rhm_A mol:protein length:351 Arginase  ali model follow..  20  2.....GSSSSGLVPRGSHMF---------SKFLMNVKGVTPRGSDWANRLGPVALFGYGAGMPRRAPLLDFFDHYAELTIHDKGPIECPPETSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLDDIVIVHFDAHPDVSD--------PRSPLRVLLDKGL-LKGVVSVGNRQV--SSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIRNDYPVFISIDADVLDPAFAPAVDSPVAGGLSTRDLLHIMNGI-RGPKVVGIDVYGYNPDLDNVGLTAIALSKIIKEGILKAYSIS. 317
10 -79.2002a0m_A mol:protein length:316 ARGINASE SUPERFAMILY PROTEIN  ali model follow..  22  4......AARTDDPRLLSLFSAQREE--DADIVIIGFPYDEGCGGRAGAKKGPAAFRFFLQRLGSVNNLELNVD-ASHLKLYDAGDITAS--TLEEAHEKLESKVFTVLARGAFPFVIGGGNDQSAPNGRAMLRAGDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLLEESFSGKRFVEFACQGSQCGALHAQYVRDHQGHLMWLSEVRKKGAVAALEDA-GKNTFFSFDVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMMMDMSELNPLVE-EYRSPRVAVYMFYHFVLGFATRP. 304
11 -76.4004rhi_A mol:protein length:351 Arginase  ali model follow..  18  2.....GSSSSGLVPRGSHMFSK-----FLMNVKGVTPRG----SDWANRLGPVALFGYGAGMPRRAPLLDFFDHYAELTIHDKGPIECPPETSDEWYLGSLEASTELLEKGYVPVSVGGDGSATLSMVEAYKRLDDIVIVHFSARPSVSD--------PRSPLRVLLDKGL-LKGVVSVGNRQV--SSEDRKVRKLHKMFYMDMHAIYSKGLFCIRDIRNDYPVFISIDASVLDPAFAPAVDSPVAGGLSTRDLLHIMNGI-RGPKVVGIDVYGYNPDLDNVGLTAIALSKIIKEGILKAYSIS. 317
12 -70.8002eiv_A mol:protein length:291 Arginase  ali model follow..  27  3.............................RVAVVGVPMDLGAN-RRGVDMGPSALRYARLLEQLED---------LGYTVEDLGDVPVSLARASRAAALVLKERLAALPEGVFPIVLGGDHSLSMGSVAGAARGRRVGVVWVDAHADFNTPESPSGNVHGMPLAVLSGLGVDPKDVVLVGVRSL--DPGEKRLLKEAGVRVYTMHEVDRLGAEEVLKHLQGLPLHVSLDADVLDPTLAPGVGTPVPGGLTYREAHLLMEILAESGRVQSLDLVEVNPILDERNRTAEMLVGLALSLLGKRI.... 290
13 -70.2001pq3_A mol:protein length:306 Arginase II, mitochondrial precursor  ali model follow..  26  2.............................SVAVIGAPFSQG-QKRKGVEHGPAAIREAGLMKRLSSLGCHLKDFTPVPKDDLYNNLIVNPRSVGLANQELAEVVSRAVSDGYSCVTLGGDHSLAIGTISGHARCPDLCVVWVDAHADINTPLTTSGNLHGQPVSFLLRELISSASIVYIGLRDV--DPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTRQRPIHLSFDIDAFDPTLAPATGTPVVGGLTYREGMYIAEEIHNTGLLSALDLVEVNPQLATSEEEAKTTANLAVDVIASSFGQT. 303
14 -69.4005ynl_A mol:protein length:362 Arginase  ali model follow..  20  22.RQHMDSPDLGTDDDDKMSPATSFLATPRTAGIVGCPFSGG-QPKAGVHSGPLQLIESGLLNDIENLGWTGADALAVSIVSDTPDPDIGRLKVSRVTKDVADRVYAHASKGQLTVTLGGDHSLAMGTVSGTFKYPEACLIWVDAHADINTPHTTSGRLHGCPVSFLLGLDLKPERIVYIGLRDI--DAGERKILKDNNIKCFSMFHVDKYGIGKVVEMARTRPIHLSFDVDALDPSVAPSTGTAVRGGLTFREGHYICEAIAETNLLVSLDIMEINPSLGALASVA-QTVDVGRSLVRCALGETL 355
15 -69.3001wva_A mol:protein length:322 Arginase 1  ali model follow..  23  1.......................MSAKSRTIGIIGAPFSKG-QPRGGVEEGPTVLRKAGLLEKLKEQECDGDLPFADIPNDSPFQIVKNPRSVGKASEQLAGKVAEVKKNGRISLVLGGDHSLAIGSISGHARHPDLGVIWVDAHTDINTPLTTSGNLHGQPVSFLLKELISAKDIVYIGLRDV--DPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETKKRPIHLSFDVDGLDPSFTPATGTPVVGGLTYREGLYITEEIYKTGLLSGLDIMEVNPSLGKTPEEVTRTVNTAVAITLACFGLA. 307
16 -68.7001d3v_A mol:protein length:323 PROTEIN (ARGINASE)  ali model follow..  23  1.......................MSSKPKPIEIIGAPFSKG-QPRGGVEKGPAALRKAGLVEKLKETEYNVRD-HGDLAFVDVPNDSPNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARHPDLCVIWVDAHTDINTPLTTSGNLHGQPVAFLLKELISAKDIVYIGLRDV--DPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSCFGTK. 307
17 -67.7001xfk_A mol:protein length:336 Formimidoylglutamase  ali model follow..  18  19.DGQAGRRVHHIACPIQVG---ELANQEPGVALIGFECDAGVKGRTGAKHAPSLIKQALANLAWH----------HPIPIYDLGNIRCEGDELEQAQQECAQVIQQALPHA-RAIVLGGGHEIAWATFQGLAQHPRIGIINFDAHFDLRSELAPVRPSSGTPFNQIHHFCQWDFHYACLGVSRASNTPALFERADKLGVWYVEDKAFSPLSLKDHLTIDDCDYLYLTIDLDVFPAASAPGVSAPAARGVSLEALAPYFDRILHKNKLMIADIAEYNPSFDIDQHTARLAARLCWDIANAMAEQV. 330
18 -67.6001t5f_A mol:protein length:314 Arginase 1  ali model follow..  24  2.............................PIEIIGAPFSKGCP-RGGVEKGPAALRKAGLVEKLKETEYNVRD-HGDLAFVDVPNDSPNPRSVGKANEQLAAVVAETQKNGTISVVLGGDHSMAIGSISGHARHPDLAVIWVDAHTDINTPLTTSSGNAGQPVAFLLKELISAKDIVYIGLRDV--DPGEHYIIKTLGIKYFSMTEVDKLGIGKVMEETKKRPIHLSFDVDGLDPVFTPATGTPVVGGLSYREGLYITEEIYKTGLLSGLDIMEVNPTLGKTPEEVTRTVNTAVALTLSAFGTK. 302
19 -65.1006dkt_A mol:protein length:296 Arginase  ali model follow..  21  2...........................DKTISVIGMPMDLGQA-RRGVDMGPSAIRYAHLIERLSD---------MGYTVEDLGDIPINRNSVLAGNEKLAQKVNKVIEEKKFPLVLGGDHSIAIGTLAGTAKYDNLGVIWYDAHGDLNTLESPSGNIHGMPLAVSLGIGIKPENVVIIGARSL--DEGERKYIKESGMKVYTMHEIDRLGMETLDYLSACDGVHLSLDLDGLDPNDAPGVGTPVVGGISYRESHLAMEMLYDAGIITSAEFVEVNPILDHKNKTGKTAVELVESLLGKKL.... 295
20 -64.8001cev_A mol:protein length:299 PROTEIN (ARGINASE)  ali model follow..  25  3.............................PISIIGVPMDLGQT-RRGVDMGPSAMRYAGVIERLERLHYDIEPIGKAERLHEQGDSRLRNKAVAEANEKLAAAVDQVVQRGRFPLVLGGDHSIAIGTLAGVAKYERLGVIWYDAHGDVNTAESPSGNIHGMPLAASLGFGIKPEHVVLIGVRSL--DEGEKKFIREKGIKIYTMHEVDRLGMTRVMEETRTDGVHLSLDLDGLDPSDAPGVGTPVIGGLTYRESHLAMEMLAEAQIITSAEFVEVNPILDERNKTASVAVALMGSLFGEKL.... 298
21 -63.9004ity_A mol:protein length:330 Arginase  ali model follow..  21  4........................SGMAKKMSIVLAPFSGGQP-HSGVELGPDYLLKQGLQQDMEKLGWDTRKVVEARKASDNGDRIGRVKRPRECTEKIYKCVRRVAEQGRFPLTIGGDHSIALGTVAGVLSHPDAGVIWVDAHADINTMSGTSGNLHGCPLSILLGLDLKPNKIAYIGLRAV--DDEEKKILHDLNIAAFSMHHVDRYGIDKVVSMAGTEPVMVSYDVDTIDPLYVPATGTPVRGGLSFREALFLCERIAECGRLVALDVVECNPLLAATESHVNDTISVGCAIARCMMGETL 314
22 -62.4004q3p_A mol:protein length:385 Arginase  ali model follow..  21  6.SGLVPRGSHMMLKSVATPYYEKPKLLYTSANFLGIPTNRG-QPKIGTYQGPELIRKSNFFQLVAEDGIQLTD-CGDIIPVELNEAEDPQRRVEELMKQSNKHTVELSGSKSTPVIVGGDHSMATGTILGHAEKPDLCVLWIDAHGDINTPLNSSGNMHGMPLSFLVKELLNASNIAYIGLRDL--DAHETHDIRKHGIAYFTMLDVDRMGIEAVIKEALEKAIHLSFDIDALDPLVAPSTGTAVPGGLTLREGLRICEEVSATGKLSVVELAELNPLLGSQEKTQSSAVHILRACLGHCRSGHL 356
23 -62.3004g3h_A mol:protein length:330 Arginase (RocF)  ali model follow..  15  1..............................MILVGLEAELGAS-KRGTDKGVRRLREALSATHGDVIKGMQTTQERCVLYKEFRYAKNFEDYYLFCKENLIPCMKEVFEKKEFPLILSSEHANMFGIFQAFRSVKKIGILYLDAHADIHTAYDSSKHIHGMPLGMVLNRVIDPKCLVYFGVRST--EQSERDVIRELQIPLFSVDAIRENMQEVVQKLKAVDIIYLSLDLDIMDGKLFTSTGVRENNGLSFDELKQLLGLLLEKDRLKAVEVTEYNPTVSIKHNNEKQVLEILDLIINSCKIKD. 313
24 -57.6003mmr_A mol:protein length:413 Arginase  ali model follow..  14  80........................NYINNNDNNNDNNNDNNNDNNNNCYIPNGVIKEKKHDLSNNKVNHNFYGNYEENNVISTNDKYKNNCEIGIFSKNLFDTMSNELRKKNFVLNIGGDHGVAFSSILSSLQYQNLRVIWIDAHGDINIPESPSGNYHGMTLAHTLLTYLKPENTAIIGIRDI--DAYEKIILKKCNINYYTIFDIEKNGIYNTICTASNCPIHISLDIDSVDNVFAPGTGTVAKGGLNYREINLLMKILAETKRVVSMDLVEYNPSLDEVDKKVHGDSLPILDNATKTGKLCL 395
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.