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Query: 1y4h_A mol:protein length:188 cysteine protease, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSQDPDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGYLast
1 -88.0001y4h_A mol:protein length:188 cysteine protease  ali model  100  1MGSSSQDPDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 182
2 -82.6001pxv_A mol:protein length:183 cysteine protease  ali model follow..  99  4........DQVQYENTLKNFKIREQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 177
3 -77.5001cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  47  2.........NEQYVNKLENFKIRETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVDNLTKNNKGIAILGSRVESRNG-MHAGHAMAVVGNAKNNGQEVIIIWNPWDNGFMTQDAKNNVIPVSNGDHYQWYSSIYGY 174
4 -66.7001x9y_A mol:protein length:367 cysteine proteinase  ali model follow..  96  179.ENEAIQEDQVQYENTLKNFKIREQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNCATFPNQMIEYGKSQGRDIHYQEGVPSYNQVDQLTKDNVGIMILAQSVSQNPNDPHLGHALAVVGNAKINDQEKLIYWNPWDTELSIQDADSSLLHLSFNRDYNWYGSMIGY 359
5 -33.6003erv_A mol:protein length:236 putative C39-like peptidase  ali model follow..  10  19.QSGKQVEFNRDEKVILSNVPFIQQLPELDRCEVTSLAMMLQYAGIT--VDKMKLANEIVGNIYTFSESGYGVYHGPLFQLAKKYLPNKAVDLTGKSIEELYKSVKAGQPVVIITETNNGDVSITYNEHCVVLIGYDQES----VYIRDPLKDSLDVKVPREKFEQ-------AWVQM.... 216
6 -25.9003ois_A mol:protein length:291 Cysteine protease  ali model follow..  9  41YTPEKSVIAALPPKVDLTPPFQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFRKIEGHVNYDSGAMIRDGIKVLHKLGVCPEYSRVAQDIDHLKACLAVGSPFVFGFSVYNSKNDTLEGGHAVLCVGYDD--EIRHFRIRNSWGNN--------------------VGEDGYFW 262
7 -23.4006a0n_A mol:protein length:343 Lpg2622  ali model follow..  9  57INTASFSSELPRKVKLGMQLTPVLDQGYHGSCVTFAVTAAIDAADYISQLCNLELGSYLAIHDKAKASGWNGSFGYWVLQQISEYGIISQNYDMNQIVYQIKEELAKGNRLTIGMLLDVFMNGMIYAGHELVITGYDDDVNKGVFTLRNSWSKF--------------------AGDQGDYY 314
8 -21.8002btw_A mol:protein length:254 ALR0975 PROTEIN  ali model follow..  8  62......................FVTQVNQAYCGVASIIMVLNSLGINAPFTQDNFFSNEKTKIAPEVVARQGMTLDELGRLIASYGVKVKVNASDTNIEDFRKQVQDGNFVIVNYLRKE---GQERGGHISPLAAYNEQTDR--FLIMDV................................ 203
9 -21.1003k8u_A mol:protein length:156 Putative ABC transporter, ATP-binding protein ComA  ali model follow..  12  10........................PQIDTRDCGPAVLASVAKHYGSNYSIAYLR---------ELSKTNKQGTTALGIVEAAKKLGFETRSIKADMTLFDYND----TYPFIVHVI------KGKRLQHYYVVYGSQNNQ---IIGDPDPSVKVTRMSKERFQS---------EWTGLAI.. 136
10 -18.5004d8b_A mol:protein length:261 Streptopain  ali model follow..  11  47...............................CVATATAQIMKYHNRESNVQKMAISELMADDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRSEAQIDKELSQNQPVYYQ-------GVGKVGGHAFVIDGADGRN---FYHV------------------------NWGWGGVSDGF 221
11 -18.1003bba_A mol:protein length:251 interpain A  ali model follow..  13  43...............................CVATATAQVLNYFKNYTEAEANAVATLMLEMQYGGPNEGSGAYMTDCAAGLTYFGFTDAEYITRANYTDVFSELTKGHPLIYG---VSPGSMGQDAGHAFVIDGYNKAG---LVSV------------------------NWGWNGDVDGY 220
12 -17.0003zua_A mol:protein length:142 ALPHA-HEMOLYSIN TRANSLOCATION ATP-BINDING PROTEIN HLYB  ali model follow..  9  7........................DSCHKIDYGLYALEILAQYHNVS--VNPEEIKHRF-------DTDGTGLGLTSWLLAAKSLELKVKQVK--KTIDRLNF----SLPALVWR----------EDGRHFILTKVSKEAN-RYLIFDLEQRNPRVLEQSEFEA---------LYQGHII.. 128
13 -17.0003bb7_A mol:protein length:321 interpain A  ali model follow..  13  116...............................AVATATAQVLNYFKNYTEAEANAVATLMLEMQYGGPNEGSGAYMTDCAAGLTYFGFTDAEYITRANYTDVFSELTKGHPLIYG---VSPGSMGQDAGHAFVIDGYNKAG---LVSV------------------------NWGWNGDVDGY 293
14 -16.9001dki_A mol:protein length:371 PYROGENIC EXOTOXIN B ZYMOGEN  ali model follow..  9  165...............................SVATATAQIMKYHNRESNVQKMAISELMADDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGEAQIDKELSQNQPVYY-------QGVGKVGGHAFVIDGADGRN---FYHV------------------------NWGWGGVSDGF 339
15 -16.8001yal_A mol:protein length:218 CHYMOPAPAIN  ali model follow..  14  13...................VTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGHAVTAVGYGTSDGKNYIIIKNSWGPN............................ 184
16 -16.7001gec_E mol:protein length:216 GLYCYL ENDOPEPTIDASE  ali model follow..  14  13...................VTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQSYGCNRGYQSTSLQYVAQNGIHLRVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGGHAVTAVGYGKSGGKGYILIKNSWGPG............................ 184
17 -16.6004bpv_A mol:protein length:225 CATHEPSIN S  ali model follow..  11  20...................VTEVKYQGSCGACWAFSAVGALE-TGKLISLSAQNLVDCSNEEKYGNKGCGGGYMTEAFQYIIDNGGIEADAS-PFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGHGVLVVGYGTLDGKDYWLVKNSWGLN............................ 197
18 -16.3001pci_A mol:protein length:322 PROCARICAIN  ali model follow..  13  119...................VTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHLRVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGGAVTAVGYGKSGGKGYILIKNSWGTA--------------------WGEKGY.. 296
19 -16.3005t6u_A mol:protein length:215 Cathepsin K  ali model follow..  14  13...................VTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGGYMTTAFQYVQQNGCRGYREIPVGNEKALKRAVARVGPISVSIDASLASFQFYSRGHAVLVVGYGTQKGSKHWIIKNSWGES............................ 187
20 -16.3005jt8_A mol:protein length:333 Blo t 1 allergen  ali model follow..  13  125...................LTRIRQQGSCGSCWAFAAAGVAE-KQQSIELSEQELVDCTYNRYDPSYQCNGSGYSTEAFKYMIRTGLVEERLRYHSSDEDVMYTIQQHGPVVIYMHGSNNYFRNLGNGHAVILVGWGTVQGVDYWIIRNSWGTG--------------------WGNGGY.. 312
21 -16.1001pvj_A mol:protein length:368 pyrogenic exotoxin B  ali model follow..  10  162...............................CVATATAQIMKYHNRESNVQKMAISELMADDMDYGPSSGSAGSSRVQRALKENFGYNQSVHQINRGEAQIDKELSQNQPVYYQ-------GVGKVGGHAFVIDGADGRN---FYHV------------------------NWGWGGVSDGF 336
22 -16.1003h7d_A mol:protein length:215 Cathepsin K  ali model follow..  11  13...................VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGHAVLAVGYGESKGNKHWIIKNSWGEN............................ 187
23 -16.1001vsn_A mol:protein length:215 Cathepsin K  ali model follow..  11  13...................VTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQRNRCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGHAVLAVGYGIQAGNKHWIIKNSWGES............................ 187
24 -16.1005tdi_A mol:protein length:215 Cathepsin K  ali model follow..  11  13...................VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLAPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGHAVLAVGYGIQKGNKHWIIKNSWGEN............................ 187
25 -16.1002f7d_A mol:protein length:215 Cathepsin K  ali model follow..  11  13...................VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQRNRCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGHAVLAVGYGIQKGNKHWIIKNSWGES............................ 187
26 -15.5001deu_A mol:protein length:277 PROCATHEPSIN X  ali model follow..  10  75MADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCN-QAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGNHVVSVAGWGISDGTEYWIVRNSWGEP--------------------WGER--GW 246
27 -15.5002fye_A mol:protein length:217 cathepsin S preproprotein  ali model follow..  14  13...................VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDA-REDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 189
28 -15.3006ex8_A mol:protein length:217 Cysteine protease  ali model follow..  12  13...................VTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYDAIAAYLAENGPLAIAVDATSTSCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNM............................ 187
29 -15.3004p6e_A mol:protein length:230 Cathepsin S  ali model follow..  14  19...................VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDA-REDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 195
30 -15.3001m6d_A mol:protein length:214 Cathepsin F  ali model follow..  13  13...................VTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLG--QDSVELSQNEQKLAAWLAKRGPISVAINAFG---SPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTD............................ 186
31 -15.3001iwd_A mol:protein length:215 ERVATAMIN B  ali model follow..  13  13...................VNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNG--NGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGHGVVIVGYGTQSGKNYWIVRNSWGQN............................ 183
32 -15.3004pi3_A mol:protein length:216 Cruzipain  ali model follow..  15  14...................VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAQIAAWLAVNGPVAVAVDASSTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQ............................ 188
33 -15.2003iut_A mol:protein length:221 Cruzipain  ali model follow..  15  13...................VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYAQIAAWLAVNGPVAVAVDASSTSCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQ............................ 187
34 -15.1005qbu_A mol:protein length:223 Cathepsin S  ali model follow..  13  14...................VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDA-REDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 190
35 -15.0001cqd_A mol:protein length:221 PROTEIN (PROTEASE II)  ali model follow..  15  15...................VVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGIDSYENVPSHNEQSLQKAVANQ-PVSVTMDAAGRDFQLYRSGHALTVVGYGTENDKDFWIVKNSWGKN............................ 186
36 -14.7005z5o_A mol:protein length:335 Cathepsin K  ali model follow..  9  127...................VTPVKNQGQCGSSWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRCRGYREIPEGNEKALKRAVARVGPVSVATDASLTSFQFYSKGHAVLAVGYGIQKGNKHWIIKNSWGEN--------------------WGNKGY.. 307
37 -14.7003b79_A mol:protein length:129 Toxin secretion ATP-binding protein  ali model follow..  8  1.........................SNAMKDPLLNSLIYVSRYYG--LANSPEALVNGL-------PLSDGKLTPFLLPRAAERAGLVAKENR--AELEKISSLI----PAILVLK----------GGDSCVLNSINMETREAEVTTLESGMVPISIPLED..................... 112
38 -14.5001khp_A mol:protein length:212 Papain  ali model follow..  14  13...................VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGHAVAAVGY----GPNYILIKNSWGTG............................ 180
39 -14.5001bp4_A mol:protein length:212 PAPAIN  ali model follow..  14  13...................VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGHAVAAVGY----GPNYILIKNSWGTG............................ 180
40 -14.5003ioq_A mol:protein length:213 CMS1MS2  ali model follow..  15  13...................VTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANSGIHLRVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGHAVAAVGY----GNDYILIKNSWGTG............................ 180
41 -14.5004yyw_A mol:protein length:220 Ficin isoform D  ali model follow..  14  13...................VDPIRDQGKCGSCWVFSVTVVVEGIVKIVTDTLPSLSEQELAPSYKDLGCKGGWMDKAYDYIIKDRGITSEYEDVPADNEDALKKAVANQPVSVAIDASSAAVKEYSSGHAVVVVGYGTESGVNYWLVRNSWGTK............................ 187
42 -14.5002c0y_A mol:protein length:315 PROCATHEPSIN S  ali model follow..  14  111...................VTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQNKGIDSDAS-PYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGHGVLVVGYGDLNGKEYWLVKNSWGHN............................ 287
43 -14.4004yyu_A mol:protein length:222 Ficin isoform C  ali model follow..  13  13...................VNPIRNQGRCGSCWAFSVVVVVEGISKIVTDELPSLSEQQLATSYKNLGCSGGWMTKAYDYIIKNGGITSQYEHVPRNNENALKKAVANQPVSVTIEAGGRAFELYKSGHAVVAIGYGSENDVDYWLVRNSWGTN............................ 187
44 -14.4004yyq_A mol:protein length:217 Ficin isoform A  ali model follow..  14  13...................VNPIRNQGQCGSCWAFSAVAAVESINKIVTGQLLSLSEQQLAQSYKNLGCQGGWVNKAFEYIIQNRGITSQYQYVPSNNENALKNAVANQPVSVAVEAAGRAFQLYKSGHAVVLIGYGKYNGVDYWLLRNSWGTN............................ 185
45 -14.4003rvw_A mol:protein length:222 Peptidase 1  ali model follow..  17  22...................VTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQH---HGDTIPRGIEYIQHNGVVQESY-YPPNVNKIREALAQTHAIAVIIGIKDLDAFRHYDGHAVNIVGYSNAQGVDYWIVRNSWDTN............................ 195
46 -14.4005fpw_A mol:protein length:321 PRO CATHEPSIN B S9  ali model follow..  14  85...................IREIADQSACRASWAVSTASVISYCTVGGVQQLRISAAHLLSCCKQCGGGCKGGFPGFAWRYYVEYGIASSTYLLLHGEEDYKRELYFNGPFVAVFYVYTDLFAYKSGGTAVKVVGWGKLNGTPYWKVANTWDTD--------------------WGMD--GY 288
47 -14.3003hhi_A mol:protein length:325 Cathepsin B-like cysteine protease  ali model follow..  14  88...................IPQIADQSACGSCWAVAAASAMS--VQDVHISAGDLLA-----CSDCGDGCNGGDPDRAWAYFSSTGLVSDTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGGHAVRLVGWGTSNGVPYWKIANSWNTE--------------------WGMD--GY 291
48 -14.3004yyr_A mol:protein length:222 Ficin B  ali model follow..  13  13...................VNPIRNQGRCGSCWAFSVVVVVEGITKIVTDELPSLSEQQLATSYKNLGCSGGWMTKAYDYIIKNGGITSQYEHVPRNNENALKNAVANQPVSVTIEAGGRAFELYKSGHAVVAIGYGSENDVDYWLVRNSWGTN............................ 187
49 -14.3001aec_A mol:protein length:218 ACTINIDIN  ali model follow..  14  13...................VVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELGRTQNTRGCNGGYITDGFQFIINNGGINTEYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGHAVTIVGYGTEGGIDYWIVKNSWDTT............................ 187
50 -14.2002bdz_A mol:protein length:214 Mexicain  ali model follow..  14  13...................VTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDNGVHTEYKYVPANDEISLIQAIANQPVSVVTDSRGRGFQFYKGGHAVTAVGY----GKTYLLLKNSWGPN............................ 180
51 -14.2002act_A mol:protein length:220 ACTINIDIN PRECURSOR  ali model follow..  13  13...................VVDIKSQGECGGCWAFSAIATVEGINKITSGSLISLSEQELGRTQNTRGCDGGYITDGFQFIINDGGINTEYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYASGHAIVIVGYGTEGGVDYWIVKNSWDTT............................ 187
52 -14.2004hwy_A mol:protein length:340 Cysteine peptidase C (CPC)  ali model follow..  14  110...................IPQIADQSACGSCWAVAAASAMS--VQDVHISAGDLLA-----CSDCGDGCNGGDPDRAWAYFSSTGLVSDTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGGHAVRLVGWGTSNGVPYWKIANSWNTE--------------------WGMD--GY 313
53 -14.1003d6s_A mol:protein length:223 Allergen Der f I  ali model follow..  17  23...................VTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCASQH---HGDTIPRGIEYIQQNGVVEERS-YPPDVKQIREALTQTHAIAVIIGIKDLRAFQHYDGHAVNIVGYGSTQGDDYWIVRNSWDTT............................ 196
54 -14.1003p5u_A mol:protein length:220 Actinidin  ali model follow..  14  13...................VVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELGRTQNTRGCDGGFMTDGFQFIINNGGINTEYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGHAVTIVGYGTEGGIDYWIVKNSWGTT............................ 187
55 -13.9003oqc_A mol:protein length:481 Ufm1-specific protease 2  ali model follow..  9  297.....................MQDRIDDNGWSAYRSLQTICSWFRHQGYTERQQALVDAGDKPATFVGSRQWIGSIEVQMVLNQLGVTSKILNQGSEMASQGRELNVGTPVMVG-----------GGVLAHTILGVAETTGQIKFLILDPHYTG------AEDLQVMLEKGWCGWKDAYYNL 466
56 -13.9001mir_A mol:protein length:322 PROCATHEPSIN B  ali model follow..  11  79...................IAQIRDQGSCGSSWAFGAVEAMS--RVNVEVSAEDLLTCCGIQCGDG----NGGYPSGAWNFWTRKGLVSGSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGGHAIRILGWGIENGVPYWLVANSWNAD--------------------WGDN--GF 292
57 -13.9001pbh_A mol:protein length:317 PROCATHEPSIN B  ali model follow..  12  80...................IKEIRDQGSCGSCWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSGSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVANSWNTD--------------------WGDN--GF 293
58 -13.9001nb3_A mol:protein length:220 Cathepsin H  ali model follow..  11  14...................VSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDT-TMNDEEAMVEAVALYNPVSFAFEVTNDHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQ............................ 191
59 -13.8001gmy_A mol:protein length:261 CATHEPSIN B  ali model follow..  14  18...................IKEIRDQGSCGSCWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVANSWNTD............................ 225
60 -13.8001ito_A mol:protein length:256 Cathepsin B  ali model follow..  14  17...................IKEIRDQGSCGSCWAFGAVEAIS--RVNVEVSAEDMLTCCGGECGDG----NGGFPSGAWNFWTKKGLVSGSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVGNSWNTD............................ 224
61 -13.7002b1m_A mol:protein length:246 SPE31  ali model follow..  11  14...................ITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVKHGILSNESTESEAESSLQSFVLEQ-PISVSIDAKD--SSPYGINHFVLIVGYGSEDGVDYWIAKNSWGED............................ 193
62 -13.7003cbj_A mol:protein length:266 Cathepsin B  ali model follow..  13  23...................IKEIRDQGSCGSAWAFGAVEAIS--HVSVEVSAEDLLTCCGSMCGDG----NGGYPAEAWNFWTRKGLVSGSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGGHAIRILGWGVENGTPYWLVANSWNTD............................ 230
63 -13.7002wbf_X mol:protein length:265 SERINE-REPEAT ANTIGEN PROTEIN  ali model follow..  11  25......................VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDEGSSPMEFLQIIEDYGFLPAESNYPYNYKIIKTEVMNKGSVIAYIKAENVMGYEFSGDHAVNIVGYSEGEKKSYWIVRNSWGPY--------------------WGDE--GY 236
64 -13.6003qj3_A mol:protein length:331 Cathepsin L-like protein  ali model follow..  11  122...................VSPVKNQGSCGSSWAFSSTGAIEMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFTYVAQNGLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGTHAVLIVGYGNENGQDYWLVKNSWGDG--------------------WGLDGY.. 303
65 -13.6004i04_A mol:protein length:323 Cathepsin B-like peptidase (C01 family)  ali model follow..  11  88...................IATIRDQSRCGSSWAFGAVEAMSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAWDYWVKEGIVTGSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGGHAIRIIGWGVENKAPYWLIANSWNED--------------------WGEN--GY 301
66 -13.5001xkg_A mol:protein length:312 Major mite fecal allergen Der p 1  ali model follow..  14  102...................VTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQH---HGDTIPRGIEYIQHNGVVQESY-YPPNANKIREALAQTHAIAVIIGIKDLDAFRHYDGHAVNIVGYSNAQGVDYWIVRNSWDTN--------------------WGDNGY.. 281
67 -13.5006mir_A mol:protein length:215 Ananain  ali model follow..  12  13...................VTSVKNQGRCGSCWAFASIATVESIYKIKRGNLVSLSEQQVLDCAVSYGCKGGWINKAYSFIISNKGVASAYTYVQRNNERNMMYAVSNQPIAAALDASGNGPCGTRLNHAIVIIGYQDSSGKKFWIVRNSWGAG............................ 183
68 -13.5003bpm_A mol:protein length:243 Cysteine protease falcipain-3  ali model follow..  11  32...................VTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDD-SIPDDKFKEALRYLGPISISIAASDDGECGAAPNHAVILVGYGMKDKFYYYIIKNSWGSD............................ 211
69 -13.4002vhs_A mol:protein length:217 CATHSILICATEIN  ali model follow..  14  13...................VTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGHAMLVVGYFISNNQKYWLVKNSWGEE............................ 189
70 -13.4002o6x_A mol:protein length:310 Secreted cathepsin L 1  ali model follow..  13  104...................VTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGGGLMENAYQYLKQFGLETESS-HSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGNHAVLAVGYGTQGGTDYWIVKNSWGLS............................ 278
71 -13.4001jqp_A mol:protein length:438 dipeptidyl peptidase I  ali model follow..  11  221...................VSPVRNQESCGSCYSFASLGMLE--SQTPILSPQEVVS-----SPYAQGCDGGFPYLIAGKYAQDFGVVEENFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGNHAVLLVGYDPVTGLDYWIVKNSWGSQ--------------------WGES--GY 413
72 -13.4001yvb_A mol:protein length:241 falcipain 2  ali model follow..  14  30...................VTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDLSVPDNKLKEALRFLGPISISVAVSDDGECGDQLNHAVMLVGFGMKEKHYYYIIKNSWGQQ............................ 209
73 -13.3003qt4_A mol:protein length:329 Cathepsin-L-like midgut cysteine proteinase  ali model follow..  11  121...................VSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDCSSSYGNADGGWMDSAFSYIHDYGIMSESA-PSGDENSLADAVGQAGPVAVAIDATDELQFYSGGNHGVLVVGYGSDNGQDYWILKNSWGSG--------------------WGESGY.. 301
74 -13.3003tnx_A mol:protein length:363 Papain  ali model follow..  11  158...................VTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGHAVAAVGY----GPNYILIRNSWGTG--------------------WGENGY.. 331
75 -13.3005xda_A mol:protein length:565 Ufm1-specific protease  ali model follow..  7  386.....................MQDGIDDSGWSAYRSFQTIWSWFILNGYTDKQQALVDIQDKQAKFVGSRQWIGSTEISFVLNELKLECRFTNSGAEVVERVRELTSGTPVMIG-----------GNMLAHTILGVDDTTGETKFLVLDPHYTG------SEDIKTITSKGWCAWKDHFYNM 555
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.