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Query: 1y7y_A mol:protein length:74 C.AhdI, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MQSHHDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFCLast
1 -48.8001y7y_A mol:protein length:74 C.AhdI  ali model  100  1MQSHHDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFC 74
2 -44.2002b5a_A mol:protein length:77 C.BclI  ali model follow..  49  3.....NEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFR 71
3 -43.1004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  29  1..GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 72
4 -42.9004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  29  1..GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 72
5 -42.9004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  30  1..GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFE 72
6 -42.7004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  29  1..GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFE 72
7 -42.4004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  30  1..GSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 72
8 -41.8003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  30  11.RGSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 83
9 -41.1003fya_A mol:protein length:99 Regulatory protein  ali model follow..  28  10PRGSHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE 83
10 -40.3003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  38  10.AELPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLL 82
11 -37.3002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  29  2......SSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL. 70
12 -34.8003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  23  4..TKTIHNARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLS 75
13 -34.5003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  32  3...........SMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQNPSIQFLEKVSAVLDVSVHTLL. 65
14 -33.9004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  16  3.....QKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD. 70
15 -33.6003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  23  17.PRKAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLI 89
16 -33.3003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  27  51.AARIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRA 123
17 -32.0003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  25  1MRKKEDKYDF-RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFF. 72
18 -31.7003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  27  2.......KTDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRKRPTITTIRKVCGTLGISVHDFF. 68
19 -31.5002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  24  9...........RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPM. 70
20 -30.6002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  20  5.PLTAEELERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVAA 76
21 -30.6005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  21  2....AMTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLT 71
22 -30.1003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  27  4..TKTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG....... 68
23 -29.7002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  16  5.....QKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD. 72
24 -29.7001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  32  1............MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQNPSIQFLEKVSAVLDVSVHTLL. 62
25 -29.5002xiu_A mol:protein length:66 CYLR2  ali model follow..  31  1............MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIF. 61
26 -29.5001utx_A mol:protein length:66 CYLR2  ali model follow..  31  1............MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF. 61
27 -29.0004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  20  31LETIMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE-DVYISTVFKILDGLGIDIVSAQT 103
28 -28.5005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  17  14...........TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCD. 75
29 -27.8005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  13  7LFQISSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANE 80
30 -27.6002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  16  1...........MELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALF. 62
31 -27.4001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  24  9...TQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFS. 78
32 -27.4001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  23  2...SLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFA 72
33 -27.1004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  16  1MTQSLHYSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRL 74
34 -27.1006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  14  1MEKKFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYI 76
35 -27.1002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  17  1...ENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPL. 70
36 -27.0003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  21  3...TQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFS. 72
37 -26.6003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  24  7...........RKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELI. 68
38 -26.5001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  25  3..........TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL. 65
39 -26.3001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  20  2....SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTP 72
40 -26.2003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  29  1............MLIRRLKDARLRAGISQEKLGVLAGIDEARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYT 66
41 -26.0001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  24  8...TQEQLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFS. 77
42 -25.9001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  19  2.SSGSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKD. 73
43 -25.7003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  20  8..........QQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLI. 70
44 -25.5001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  16  1MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILL 74
45 -25.5004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  22  23.....TAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFI. 90
46 -25.5006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  28  236...........GDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLV 298
47 -25.4001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  23  1..........MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAG-VTKRPRFLFEIAMALNCDPVWLQY 63
48 -25.4004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  29  1............MLGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYC 66
49 -25.3001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  24  1............SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENG-KTKRPRFLPELASALGVSVDWLLN 61
50 -25.2003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  20  5VDLGTENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIF. 77
51 -24.8001sq8_A mol:protein length:64 dh434  ali model follow..  29  1...........MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENG-KAKRPRFLPELARALGVAVDWLLN 62
52 -24.4002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  23  2.............ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENG-KTKRPRFLPELASALGVSVDWLLN 61
53 -24.2002l49_A mol:protein length:99 C protein  ali model follow..  15  1.........MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLW. 64
54 -24.1003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  20  4..........MRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEAEPDPAAATALAEALSVEPSQLAA 68
55 -23.9003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  20  1....SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELV. 69
56 -23.8005a7l_A mol:protein length:80 CI  ali model follow..  20  1.........MQTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM. 73
57 -23.3002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  14  3......KDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLI. 69
58 -23.1002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  21  1............MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIV. 61
59 -23.1005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  22  1.......MNLKDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELL. 67
60 -23.1003zhi_A mol:protein length:83 CI  ali model follow..  20  3..........KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLM. 74
61 -23.0003zhm_A mol:protein length:79 CI  ali model follow..  20  1..........KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM. 72
62 -22.7005fd4_A mol:protein length:324 ComR  ali model follow..  27  23...........KEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELM. 85
63 -22.5005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  22  2...ASHERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPPIYLLLHFYIEGQITDRQLA. 72
64 -22.3002qfc_A mol:protein length:293 PlcR protein  ali model follow..  23  3..........AEKLGSEIKKIRVLRGLTQKQLSE---CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYE 65
65 -22.3002aw6_A mol:protein length:317 PrgX  ali model follow..  22  1..........MFKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL. 62
66 -22.0004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  31  1.........MDKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFV. 63
67 -21.8002jvl_A mol:protein length:107 TrMBF1  ali model follow..  17  27.....KPKTVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGAN. 96
68 -21.3004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  27  1..........MGSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF. 62
69 -21.2005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  14  1....QKEYMEYRPLGEEIERIRKGKNIPLRVFD-ENGVSSRSYQRFVQGNSELRISDLAIIVEILSISPMEMT. 68
70 -19.9005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  18  2................DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDATQDGLEHLQNVAQYLAIPLSEFFV 61
71 -19.5004yba_A mol:protein length:99 Regulatory protein C  ali model follow..  17  3......QNHIKNMTPEICKASRALVNLTQKELALMAGIATPTIADFERGARKPHGNNLRSIIIAFENKGLDFV. 69
72 -18.9003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  24  8...TQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFS. 77
73 -18.7002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  20  2..GSDKIMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKDLFSLESLIDMITSIGLKVE.... 70
74 -18.5005y69_A mol:protein length:151 chain A  ali model follow..  11  2...........SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPNKYTVSILRSLSMISGLSVSDVL. 64
75 -17.5002o38_A mol:protein length:120 Hypothetical protein  ali model follow..  17  30..PDAEERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKEGFSVERLMTLLNALDQDVE.... 98
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205