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Query: 1y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERSFPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPRREGGSLast
1 -86.3001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model  100  1MSLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSSERSFPDDLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIVAYPRREGGS 186
2 -59.9001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  18  2..SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGNDLDDKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFSGHAGNEFLFVLEGEIHMKWGDKEALLPTGASMFVEEHVPHAFTAAGTGSAKLIAVNF....... 198
3 -54.5005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  17  2..............DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDATQDGLEHLQNVAQYLAIPLSEFFVGQTQSDLDDGVKIGVHYYTYEHLVTTNQDPGLMALRLDLHSDDEQPLRLGGHGSREIVYVTRGAVRVRWVGDNDVLNEGDSIFILPNVPHSFTNHVGGAKSEIIAINY...... 189
4 -51.3006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  5IDFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDDCSSGILIMTSQDSYEYRDTAMSKTAPFRPEWILELCKVENNDPENNGHFMHQFTYFI-GEVNFYYKDHVAIMNTGDSMYITPFTPHTFTTRDGASQNGLILALTYG.... 210
5 -48.2003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  14  7...........DPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLAADAEEMHASRRPIQRDGIHFYNFYTLAAPEGRVAPVVLDILCPSDRLPANNGHLEPAITVNLQTWRVLHANHGGDRWITGDSYVEPSYCPHSYSLAGDAPARIVSYTAQSN.... 205
6 -45.3005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  17  10.ISSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLRGNQNIINDPLILFKVYGSSLRGIIHEEFGDGIMSAIDCKIDVTKNEQSRVILRIDGKF---LPYYKGQLDAGENLYFQSA........................... 169
7 -44.1006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  7.LGSDAARAARAAALLRAAANDLKRNDRAAEADLGLPPGSFGDYVSGRLPITWDLISRAAQAWPLNERDLLPIHNDTPQGLRMMRVKESEASSRIIERGGGPYYEYRDTAMSPDNPLVEWNKGHLLYQFTYFVPVNYYFRSGGRSHPMNTGDSVWGLPFAPHSFTARSADEPAYILALTYGG.... 210
8 -38.9006b8w_A mol:protein length:95 XRE family transcriptional regulator  ali model follow..  28  1.......................................................................................QAMVVKPLFPWDETLKFDHFSIILAPGALSESTPHEAGVIEHVVVISGELEMKIDGEWRTLYPDQGVRFAGDKPHAYRNSSSRPVHFHSLIHYPR.... 95
9 -37.0004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  15  4.SLHYSSPRETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQTIPLRGSIPGGVPTDPTISTLKALVHEQFGDGIISAINFKLDIKKVPDPDGGERAVITLDGKY................................................. 150
10 -36.7005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  20  2..AMTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGESMARRE........................................................................................................ 81
11 -35.9003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  20  19.KAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAA............................................................................................................... 92
12 -33.2003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  19  53.RIADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQ....................................................................................................... 134
13 -32.6003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  14  13..PDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQE.............................................................................................................. 86
14 -30.9001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  10  4.SQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKY................................................. 150
15 -30.6003fya_A mol:protein length:99 Regulatory protein  ali model follow..  26  13.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE.................................................................................................................. 83
16 -30.3003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  23  13.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD........................................................................................................ 93
17 -30.1001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  29  2...........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQ........................................................................................................ 73
18 -30.0003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  20  1MRKKEDKYDRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKST......................................................................................................... 82
19 -29.6001sef_A mol:protein length:274 conserved hypothetical protein  ali model follow..  14  1..........................................MSLMGYKNNRVGYQKELLTSRAVIKKDNYAIIPHDGLVQNAVPGFENVDISILGSPKLGATFVDYIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYKKRYQP... 141
20 -29.1002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  25  2MSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQNLE.................................................................................................... 87
21 -29.0004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  28  34.IMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGE-DVYISTVFKILDGLGIDIVSAQTSDTETNG........................................................................................................... 110
22 -28.9002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  27  2...........IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLNPVE......................................................................................................... 71
23 -28.8005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  24  5MSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPESTEQQDLE.................................................................................................... 90
24 -28.8004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  26  2.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFE.................................................................................................................. 72
25 -28.8004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  28  2.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFE.................................................................................................................. 72
26 -28.8004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  26  2.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFE.................................................................................................................. 72
27 -28.7003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  32  2........SSMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHE.............................................................................................................. 70
28 -28.6005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  18  1MN-----LKDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPDEYYEMKN---RLIKFPTYRNPDRIKSKLTLIEEVYEKFFDILPEEELLTLDILENILSFTSWEE.......................................... 137
29 -28.6004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  26  2.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFE.................................................................................................................. 72
30 -28.5004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  26  2.SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFE.................................................................................................................. 72
31 -28.1002b5a_A mol:protein length:77 C.BclI  ali model follow..  24  2..INEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEE.............................................................................................................. 75
32 -27.7002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  21  6LTAEELERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVAAVVT............................................................................................................... 79
33 -27.4001y7y_A mol:protein length:74 C.AhdI  ali model follow..  23  4.HHDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFC.................................................................................................................. 74
34 -26.7004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  26  1.SFQKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK................................................................................................................. 72
35 -26.5002qfc_A mol:protein length:293 PlcR protein  ali model follow..  23  1......MQAEKLGSEIKKIRVLRGLTQKQLSE--NIHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYE.................................................................................................................. 65
36 -26.5001vj2_A mol:protein length:126 novel manganese-containing cupin TM1459  ali model follow..  12  1..............................................................MGSDKIMILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGL--IDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEG.... 118
37 -26.4005fd4_A mol:protein length:324 ComR  ali model follow..  20  22........DKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSK....................................................................................................... 97
38 -26.3003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  25  2.....KTDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSRPTITTIRKVCGTLGISVHDFFDFPP............................................................................................................... 72
39 -26.1003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  21  7LGTENLYFQSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNE............................................................................................................... 81
40 -25.9003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  23  2...NAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQE.............................................................................................................. 74
41 -25.8005wsd_A mol:protein length:118 Uncharacterized protein tm1459  ali model follow..  13  2.................................................................PSGMILKRAYDVTPQKISTDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGL--IDRHSHPWEHEIFVLKGKLTVLKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFLCLIPKEG.... 116
42 -25.8002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  20  2....SSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL................................................................................................................... 70
43 -25.6001rc6_A mol:protein length:261 Hypothetical protein ylbA  ali model follow..  10  1..........................MGYLNNVTGYREDLLA--NRAIVKHGNFALLTPDGLVKNIIPGF-----------------ENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEG 141
44 -25.4002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  18  1.ENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKE.......................................................................................................... 79
45 -25.1005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  20  1..QKEYMEYRPLGEEIERIRKGKNIPLRVFDE-NGVSSRSYQRFVQGNSELRISDLAIIVEILSISPMEMTE.................................................................................................................. 69
46 -25.1001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  13  4.GSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAKSGPSSG................................................................................................. 91
47 -25.1005uqp_A mol:protein length:125 Cupin  ali model follow..  12  46...................................................................................................SVAPFTLAHIRVPGGVT--TAEDHHEVREIWLVQSGSGILTLDGVRSRVRAGDTLYYESYRRHQLHNDGDSPVEIVSIWWRP..... 125
48 -24.9003h50_A mol:protein length:114 Tetracenomycin polyketide synthesis protein  ali model follow..  14  18...................................................................................................SLRQVQAAEMVIAPGDREGGPDNRHGADQWLFVVDGAGEAIVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNFYHPPA.... 101
49 -24.9004b29_A mol:protein length:217 DIMETHYLSULFONIOPROPIONATE LYASE  ali model follow..  10  1MGSSSSGLVPR-GSHMASGRAALTHLLEAAREALPEFRAFATWPEDLRWADRPAHALPVIDHLTRDPGHASDQSQPLRDALVAAAPHNRFGWFELAGPSLTQSLRVTVGYWGPGLDY--GWHEHLPEELYSVVSGRALFHLRNAPDMLEPGQTRFHPANAPHAMTT-LTDPILTLVLWRGAGLGDD 206
50 -24.9005j7m_A mol:protein length:123 Cupin 2 conserved barrel domain protein  ali model follow..  15  27..............................................................................................QYGLGTAMPFQAMWYSVPPGDE--SPIDQHPELELSIVVAGTAHVTVGDTVHEVPHGNAFLLNSLEAHVVQNRSADEVLTVFSAYWYPEA.. 114
51 -24.8004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  23  1.......MDKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFV................................................................................................................... 63
52 -24.8005y69_A mol:protein length:151 chain A  ali model follow..  18  2.........SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPLKYTVSILRSLSMISGLSVSDVLFELEDIEKNS......................................................................................................... 74
53 -24.7003jzv_A mol:protein length:166 uncharacterized protein Rru_A2000  ali model follow..  22........................................................................PGVDLLAYKEEGSAPFRSVTRQVLFSGNGLTGELRYFEVGPGGH--STLERHQHAHGVMILKGRGHAMVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCMVNAER.... 129
54 -24.5003kgz_A mol:protein length:156 Cupin 2 conserved barrel domain protein  ali model follow..  10  13........................................................................DGVAVMPYKQTAEAPFQDVSRQLLFADPNLACEWRYFEVDEGGY--STLERHAHVHAVMIHRGHGQCLVGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCVVNAAR.... 120
55 -24.5002l49_A mol:protein length:99 C protein  ali model follow..  26  1.......MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLW................................................................................................................... 64
56 -24.4001v70_A mol:protein length:105 probable antibiotics synthesis protein  ali model follow..  22  24...................................................................................................QSERMLYDLYALLPGQAQKVHVH-EGSDKVYYALEGEVVVRVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVVTAPR..... 104
57 -24.3003i7d_A mol:protein length:163 sugar phosphate isomerase  ali model follow..  12  1.............................................................GMPKLDLDSIERRIGSVYPGRLNAAMDGRSSLRLGDAGGLSQFGVNLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLVDDQGEHPMVPGDCAAFPAPNGHQFVNRTDAPATFLVVGTRTP.... 123
58 -24.3004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  25  2...........LGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAE........................................................................................................... 73
59 -24.2003cew_A mol:protein length:125 Uncharacterized cupin protein  ali model follow..  19  17..............................................................................................LHDSLALTGAEVSINHLPAGAGVPFVHSHKQNEEIYGILSGKGFITIDGEKIELQAGDWLRIAPDGKRQISAASDSPIGFLCIQVKA..... 103
60 -24.1003h7j_A mol:protein length:243 Bacilysin biosynthesis protein bacB  ali model follow..  61..................VSGELMMTVGDVTRKMTALESAYPHVPHGARNDTDQEVIAIDIKRLKADETYTSPEDYFLDIFKTRDLLPGMEVTFFV---EDWVEIMLAKIPGNGGEM--PFHKHRNEQIGICIGGGYDMTVEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSINIFFPPRY... 223
61 -24.1004mv2_A mol:protein length:128 plu4264  ali model follow..  12  25..............................................................................................LPWEGLNTPFGGAWCIVRPETK--SFRHSHNEYELFIVIQGNAIIRINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFYTIWWDKE.... 110
62 -23.8003ht1_A mol:protein length:145 RemF protein  ali model follow..  18  1.................................................................SMMKRVHRTDVKAEIVREPGAKETTHRKLIDTPDGADRFVLTEFEVSPNG--STPPHFHEWEHEIYVLEGSMGLVLPDQTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLVVAPCERPPV. 120
63 -23.8005cu1_A mol:protein length:212 DMSP lyase  ali model follow..  13  1MSSGSMTQTDPAFQNLLAEFQALHAREPALAGFVALPDSLTPQPVTPVRIPPAALMESDPDLTTTAYAAIRDARLTYQGSRLGADFMDRFACYCLIGEGASDSLAAYVVYMPAGLYY--PFHQHPAEEIYFILAGEAEFLMEGHPRRLGPGDHVFHPSGHPHATRTYDRPFMALVL.......... 188
64 -23.6005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  17  1MASHERTQPQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPPIYLLLHFYIEGQITDRQLADLRGKIRE........................................................................................................... 80
65 -23.6002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  13  1..MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKK............................................................................................................... 73
66 -23.6001sfn_A mol:protein length:246 conserved hypothetical protein  ali model follow..  11  76....SGEVDVAVGGETRTLREYDYVYLP-----AGEKHML-----TAKTDARVSVFEKPYQTVEGVQAPGVYWGNERENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASL-PYAEVHYMEHGLLMLEGEGLYKLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLLYKDMNRHPLG 246
67 -23.5001sq4_A mol:protein length:278 Glyoxylate-induced Protein  ali model follow..  10  12................................................GHPAQTELLTDRAMFTEAYA-VIPKGVMRDIVTSHLPFWDNMRMWVIARPLSGETFSQYIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIRKHYQK... 147
68 -23.5004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  18  2.........GSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF................................................................................................................... 62
69 -23.5001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  15  8LTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPS................................................................................................................. 80
70 -23.5004rd7_A mol:protein length:127 Cupin 2 conserved barrel domain protein  ali model follow..  12  30..................................................................................................TVNAPFEGSWCVVAPGVS--SGEHGHHEYEIWIAMTGRAELVSDGARRPFHAGDVVYLPPGSRHQVVNPTDEQFQMYAVWWDA..... 110
71 -23.5004e2q_A mol:protein length:266 Ureidoglycine aminohydrolase  ali model follow..  15  168.....................................................................................PGEVFELRKLLPMSVAYDFNIHTMDFQPGEFL-NVKEVHYNQHGLLLLEGQGIYRLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRN... 264
72 -23.4002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  21  2..........ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVNKLE.......................................................................................................... 71
73 -23.3003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  23  2...........LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQ........................................................................................................... 73
74 -23.3002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  20  9.........RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD.................................................................................................................. 71
75 -23.3002xiu_A mol:protein length:66 CYLR2  ali model follow..  29  2...........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE.............................................................................................................. 66

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Jambon M, Godzik A. New avenues in protein function prediction. Protein Sci. 2006 Jun;15(6):1527-9.