current user: public
If you have questions about the server, please let us know.

Query: 1z2b_A mol:protein length:448 Tubulin alpha chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .
# Score Template Links and tools%idFirst MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEELast
1 -129.0001z2b_A mol:protein length:448 Tubulin alpha chain  ali model  100  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGIDSYEDEDEGEE 448
2 -127.0005Z4P Entity 3(prereleased)  ali follow..  99  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV........ 440
3 -127.0002xrp_B mol:protein length:452 TUBULIN ALPHA-1D CHAIN  ali model follow..  97  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEE 448
4 -127.0003du7_A mol:protein length:449 Tubulin alpha-1C chain  ali model follow..  98  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSYEDEDEGEE 448
5 -126.0004ffb_A mol:protein length:447 Tubulin alpha-1 chain  ali model follow..  75  1MREVISINVGQAGCQIGNACWELYSLEHGIKPDGHLEDGLSKPGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRNGPYKDLFHPEQLISGKEDAANNYARGHYTVGREILGDVLDRIRKLADQCDGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSKAFHESNSVSEITNACFEPGNQMVKCDPRDGKYMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRAVCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALERDYIEVGADSYAEEEE... 446
6 -126.0003j8x_A mol:protein length:451 Tubulin alpha-1B chain  ali model follow..  98  1MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEG 448
7 -126.0005ubq_C mol:protein length:441 Tubulin alpha chain  ali model follow..  87  1MREVISIHVGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETAE....... 441
8 -124.0006e88_A mol:protein length:434 Tubulin alpha-2 chain  ali model follow..  88  1MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNE--GESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGHYTVGKELIDTVLDRIRRLADNCSGLQGFFVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNSCFEPANQMVKCDPRHGKYMAVCLLYRGDVVPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVPRAVCMLSNTTAIAEAWSRLDYKFDLMYAKRAFVHWYVGEGMEEGEFTEAREDLAALEKDYEEVG............ 434
9 -121.0005mlv_E mol:protein length:455 Tubulin alpha-1 chain  ali model follow..  76  1MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSENSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEAD 452
10 -119.0005Z4P Entity 4(prereleased)  ali follow..  40  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL--QLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAD....... 431
11 -119.0005ij0_B mol:protein length:426 Tubulin beta-3 chain  ali model follow..  41  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDSDL--QLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVATVFRGRMSMKEVDEQMLAIQSKNSSYFVEWIPNNVKVAVCDI--------PPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ............ 426
12 -118.0005n5n_B mol:protein length:426 Tubulin beta chain  ali model follow..  41  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDL--QLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ............ 426
13 -118.0006e88_B mol:protein length:426 Tubulin beta-2 chain  ali model follow..  41  1MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQ--LERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLSAKGTQAYRALTVAELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMREVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQ............ 426
14 -118.0005ubq_D mol:protein length:429 Tubulin beta chain  ali model follow..  41  1MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDL--QLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVVPSPKVSDTVVEPYNATLSVHQLVENADECMVIDNEALYDICFRTLKLTTPTYGDLNHLVSAAMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMIGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSICDI--------PPKGLKMAVTFVGNSTAIQEMFKRVAEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT......... 429
15 -117.0005mlv_I mol:protein length:448 Tubulin beta chain  ali model follow..  40  1MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEA--QHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPP--------KDLKMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYE 438
16 -117.0005nd4_A mol:protein length:412 Tubulin alpha chain  ali model follow..  98  1.RECISIHVGQAGVQIGNACWELYCLEHGIQPDG--------------------------HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDS......... 412
17 -116.0001z2b_B mol:protein length:445 Tubulin beta chain  ali model follow..  40  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL--QLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEE 438
18 -116.0003ryc_B mol:protein length:445 Tubulin beta chain  ali model follow..  40  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL--QLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEE 438
19 -116.0001ffx_B mol:protein length:445 PROTEIN (TUBULIN)  ali model follow..  40  1MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDL--QLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDI--------PPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEE 438
20 -115.0002btq_B mol:protein length:426 TUBULIN BTUBB  ali model follow..  38  1VREILSIHVGQCGNQIADSFWRLALREHGLTEAGTLKEGSNAA-ANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESSIVRKIPGAANNWARGYNVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKL-NRSPNYMDLNNIIALIVSSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVRTNFPDLARETFAQDNFTAAIDWQQGVYLAASALFRGDVKAKDVDENMATIRKSLNYASYMPASGGLKLGYAET--------APEGFASSGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRDAS............ 426
21 -115.0005flz_C mol:protein length:473 TUBULIN GAMMA CHAIN  ali model follow..  27  3.GEIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDTKPFFRENCRNKFTPRAIMMDSEPSVIADVENTFRGFFDPRNTWVASDGASAGNSWANGYDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSMSSIYSTLIPSPELHFLSPSFTPFTSDYIHDDIAHSSYDVMLDLLDPSNSLVSTAMNNPTYFNVYNTIIGNVEPRQISRAMTKLQQR--IKFPSWSSSAMHVNIGRRSPY--LPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGDLFQDEFAESREVVQSLMEDYVAAEQDSYLDDVLVDD 453
22 -114.0004ffb_B mol:protein length:463 Tubulin beta chain  ali model follow..  40  1MREIIHISTGQCGNQIGAAFWETICGEHGLDFNGTYHGHDDI--QKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKRSDTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSV--------APQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEVDE 438
23 -113.0005w3j_B mol:protein length:457 Tubulin beta chain  ali model follow..  40  1MREIIHISTGQCGNQIGAKFWEVICDEHGLDFNGTYHGHDDI--QKERLNVYFNEASSGKWVPRSINVDLEPGTIDAVRNSAIGNLFRPDNYIFGQSSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGGGTGSGMGTLLISKIREEFPDRMMATFSVLPSPKTSDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNHLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGFAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCSV--------APQGLDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEVDE 438
24 -110.0003cb2_A mol:protein length:475 tubulin gamma-1 chain  ali model follow..  30  3.REIITLQLGQCGNQIGFEFWKQLCAEHGISPEAIVEEFATE--GTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEGGGAGNNWASGFSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASRKTTVLDVMRRLLQPKNVMVSTGRTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRK-----SPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDESREIVQQLIDEYHAATRPDYISWGTQEQ 451
25 -110.0002bto_A mol:protein length:473 TUBULIN BTUBA  ali model follow..  34  3VNNTIVVSIGQAGNQIAASFWKTVCLEHGIDPLTGQTAPGVAPGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVKATSG-SLFNPANLISRTEGAGGNFAVGYLGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFLTVEISELLTNLVPQPSLHFLMCAFAPLTPPDRSKFEELGIEEMIKSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAM-REKLPLTYWIPTAFKIGYVEQ--------PGISHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESGAKAKVQDSA 443
26 -27.6003zid_A mol:protein length:373 TUBULIN/FTSZ, GTPASE  ali model follow..  15  1MLNVLMLGVGQCGNRILDAVNR--------------------QAFGGSRLAKYYSKQRFPSRVETIAINTAINDLKELKFTAAKDRL----HVPNLHGVGAN------SKGKQGFWENQEMILEEIEKRGDFDLIFVMTSVSGGTGSSFSPLMIHELKKRYKNATIVPIAVLPFREEGTIYLQ--NAAFCLREMIEEADGMILVDNQYLKRFSGDIAS----AYDRINTMVAQRLLFLIEALDSEMLSVTDLGDFKTVMNGGLRM----------LGYYQADKKSPSIRAAIKNSLREVGLLYPANVDAGEAGRAMIVIQGSLNVDEITKEIESLTETIGHVF-----------------KGIVIKKGEPRVLSVLSLERAPGLVELYEKAKWAIQEERERKD----------ARSELYEAFEQINDLEEIY................ 367
27 -21.6003v3t_A mol:protein length:360 Cell division GTPase FtsZ, diverged  ali model follow..  15  5.NKIVFAPIGQGGGNIVDTLLGI----------------------------------------NALFINTSKKDLDSLKH-------KHTYHIPYAEGCGKERKKAV-GYAQTYYKQIIAQIMEKFSSCDIV---IFVATMAGGAGSGITPPILGLAKQMYPNKHFGFVGVLPKA--TEDIDEHMNAIACWNDIMRSTNSIYLLDNN------------KREKESDINKEFATLFNDFMNMSESHAEGVVDEDEISKLL............................................................................................................................................................................................. 207
28 -21.3002xkb_A mol:protein length:427 FTSZ/TUBULIN-RELATED PROTEIN  ali model follow..  9  24..RWGVIGAGQKGNKEADLFAGY-------------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLG-----------EYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQDEEKVDISFAT........................ 421
29 -21.2003m89_A mol:protein length:427 FtsZ/tubulin-related protein  ali model follow..  10  38..RWGVIGAGQKGNKEADLFAGY-------------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRN............................................................................................................... 359
30 -20.8004b46_A mol:protein length:395 CELL DIVISION PROTEIN FTSZ  ali model follow..  20  2..KLAMIGFGQAGGKVVDKFVE------------------------------YDRERNAGIVRAAVAVNSAKADLLGLKNIPKDQRVLIGQSRVKGHGVGAD------ELGAEIAEEDIDEVQGAIDSVHEVDAFLVVSGLGGGTGSGGAPVLAKHLKRIY-TEPVYGLGILPGSDEGGIYTL--NAARSFQTFVREVDNLLVFDNDAWRKTGESV----QGGYDEINEEIVNRFAGEVQDGQEVAESVVDSSEIINTL............................................................................................................................................................................................. 223
31 -20.0004b45_A mol:protein length:349 CELL DIVISION PROTEIN FTSZ  ali model follow..  20  2..KTVLIGVGQAGGKLASALQSF------------------------------DRQTGFGAVLDAVAVNTAKADLQSLPV---------ETVLIGQDRVNGHGVGGDNELGAAVMESDQTEVMSALDG-AEAESIFVVAGLGGGSGSGGAPVLAKALAGVY-DVPVYVLGILPGADEGALYQV--NAGRSLKTVAREADAVLLVDNDAFRSAGESM----SEGYDAINEAIARRVGLLLAATEGVGESVVDTSEVINTL............................................................................................................................................................................................. 217
32 -19.5004ei7_A mol:protein length:389 Plasmid replication protein RepX  ali model follow..  15  17..KFGFLGLGMGGCAIAAECANK------------------------------TQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNV-RKIQLEGYEQGAARNPQVGEEAF-VKHETKIFEAVKQEFEDRDFI---WITCGLGGGTGTGALLKAIEMLYEH--DYNFGLLLTLPRDAEAKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANTSYSNKYIADALNLVTSSFTPFSDTHFDASEFAQVI............................................................................................................................................................................................. 243
33 -18.9003j4t_F mol:protein length:490 FtsZ/tubulin-related protein  ali model follow..  9  30..RWGVIGAGQKGNKEADLFAGY-------------------------------KFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRI----HFDGLKGAARTPSVVT-PETNPNANGYLDKLAQELGR-VIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEI-FMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKNRYVNWKEVANDNVVSTLHEIIPENYGSDNVTYDPSDLIKLL-----------RFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLG-----------EYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQE-----QLRAEAQRKQDEEKVDISFATNRVQKNTFNPYNKNQG... 443
34 -16.9003zbp_A mol:protein length:333 PHIKZ039  ali model follow..  12  6..KTRIYFCGGAGFRIGELFHGY----------------------------------------DVCYIDTSVQNKHKHNTDDNTIIIEADTARKRAIGMGKD------KAAAELISAHIPAIAHHFPAGDTN---IVVYSMGGASGSTIGPSLVSHLQQQGEVVVSVVIGSYDSDISLRNSSGSLKTFEGVSSVSKVPMIINYHENV------------EGIPQSMVNQNILEVLNALVILFN-QEHQSLDLMDITNWA............................................................................................................................................................................................. 209
35 -14.9003j5v_a mol:protein length:320 PhuZ201 subunit  ali model follow..  13  9..KVCLIFAGGTGMNVATKLVDL----------------------------------------AVHCFDTCDKNVVDVHRS------VNVTLTKGTRGAGGN------KVILPLVRPQIPALMDTIPEADFY---IVCYSLGGGSGSVLGPLITGQLADRKASFVSFVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNT------------QGRSYESINDEIAEKIRKVVL-LVNQNHGRLDVHDVANWV............................................................................................................................................................................................. 200
36 -13.5002rhh_A mol:protein length:325 Cell Division Protein ftsZ  ali model follow..  16  1MASIKVIGVGGGGNNAVNRMIE-----------------------------------NEVQGVEYIAVNTDAQALNLSKA--------EVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKDL-----ALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM............................................................................................................................................................................................. 208
37 -13.5004e6e_A mol:protein length:314 Cell division protein ftsZ  ali model follow..  15  11..VIKVVGIGGGGVNAVNRMIE-----------------------------------EGLKGVEFIAINTDAQALLMSDA--------DVKLDVGRELTRGLGAGANPDVGRKAAEDHREEIEEVLKGADMV---FVTAGEGGGTGTGGAPVVANIARSL-----ALTIGVVTRPFSFEGKRRATQAEAGIAMLREEVDTLIVIPNDRLLSISDRQVSVLD-AFKAADQVLLSGVQGITDLITTPGLINLDFADVKSVM............................................................................................................................................................................................. 216
38 -13.3003wgj_A mol:protein length:308 Cell division protein FtsZ  ali model follow..  15  5..TLKVIGVGGGGNNAVNRMID-----------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIATPGLINLDFADVKTIM............................................................................................................................................................................................. 210
39 -13.2002r6r_1 mol:protein length:338 Cell division protein ftsZ  ali model follow..  18  9..KIKVIGVGGGGSNAVNRMYE-----------------------------------DGIEGVELYAINTDVQHLSTLKV--------PNKIQIGEKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMV---FISAGLGGGTGTGAAPVIAKTAKEM-----ILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIKD-AFKEVDSVLSKAVRGITSIVVTPAVINVDFADVRTTL............................................................................................................................................................................................. 214
40 -12.5001fsz_A mol:protein length:372 FTSZ  ali model follow..  17  39..KITVVGCGGAGNNTITRLKM-----------------------------------EGIEGAKTVAINTDAQQLIRTKA--------DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMV---FITCGLGGGTGTGSAPVVAEISKKI-----ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNM----KLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVM............................................................................................................................................................................................. 243
41 -12.3001w5f_A mol:protein length:353 CELL DIVISION PROTEIN FTSZ  ali model follow..  19  23..KIKVIGVGGAGNNAINRMIE-----------------------------------IGIHGVEFVAVNTDLQVLEASNA--------DVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMV---FITAGFGGGTGTGASPVIAKIAKEM-----ILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIKD-AFLKADETLHQGVKGISELITKRGYIRLTSRFARIESV............................................................................................................................................................................................ 229
42 -12.0001rlu_A mol:protein length:382 Cell division protein ftsZ  ali model follow..  15  13..VIKVVGIGGGGVNAVNRMIE-----------------------------------QGLKGVEFIAINTDAQALLMSDA--------DVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMV---FVTAGEGGGTGTGGAPVVASIARKL-----ALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLMD-AFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIM............................................................................................................................................................................................. 218
43 -11.9002vaw_A mol:protein length:394 CELL DIVISION PROTEIN FTSZ  ali model follow..  15  13..VIKVIGVGGGGGNAVNHMAK-----------------------------------NNVEGVEFICANTDAQALKNIAA--------RTVLQLGPGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMV---FITTGMGGGTGTGAAPIIAEVAKEM-----ILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAKADDVLAGAVRGISDIIKRPGMINVDFADVKTVM............................................................................................................................................................................................. 218
44 -11.6002vam_A mol:protein length:382 CELL DIVISION PROTEIN FTSZ  ali model follow..  16  13..SIKVIGVGGGGNNAVNRMIE-----------------------------------NEVQGVEYIAVNTDAQALNLSKA--------EVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMV---FVTAGMGGGTGTGAAPVIAQIAKDL-----ALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLE-AFREADNVLRQGVQGISDLIATPGLINLDFADVKTIM............................................................................................................................................................................................. 218
45 -11.5004dxd_A mol:protein length:396 Cell division protein FtsZ  ali model follow..  15  13..TLKVIGVGGGGNNAVNRMID-----------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM............................................................................................................................................................................................. 218
46 -11.4004m8i_A mol:protein length:400 Cell division protein FtsZ  ali model follow..  15  13..TLKVIGVGGGGNNAVNRMID-----------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTAGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFGFEGRKRQTQAAAGVESMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIM............................................................................................................................................................................................. 218
47 -10.4003wgk_A mol:protein length:390 Cell division protein FtsZ  ali model follow..  15  15..TLKVIGVGGGGNNAVNRMID-----------------------------------HGMNNVEFIAINTDGQALNLSKA--------ESKIQIGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMV---FVTSGMGGGTGTGAAPVVAKIAKEM-----ALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMME-AFKEADNVLRQGVQGISDLIAVGAGLDADVKTIMSN.............................................................................................................................................................................................. 220
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 4 5 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.