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Query: 1za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAQKPVADALTLELEPVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLKQFVTGLast
1 -104.0001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model  100  1MAQKPVADALTLELEPVVEANMTRHLDTEDIWFAHDYVPFDQGENFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLKQFVTG 275
2 -70.7002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  19  6.SMPPQKLEIFKSLDDWARNNVLIHLKSVEKWQPQDYLPDPVSD-GFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKENSPYLGFIYTSFQERATFISHAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITMPAHLLLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSD.... 293
3 -69.7001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  21  31.SMPPQKIEIFKSLDNWAEENILVHLKPVECWQPQDFLPDPASDGFD-EQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRENSPYLGFIYTSFQERATFISHGNTARQAGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSA.... 318
4 -32.3005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  12  11.....................................................LDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEML---PDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQEGDLTTCMVIQALIIECFAIAAYNVYIPVA-DAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEA----VEDFMIAYGEALGDIGFSMRDVMKMSARG 228
5 -32.0004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  25......................................................DFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLL---PDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQGQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKED----IEDFLIAYQESLTEIGFNTREITRMAAAA 241
6 -31.8004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  25......................................................DFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLL---PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKED----IEDFLIAYQESLTEIGFNTREITRMAAAA 241
7 -31.7005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  10....................................................ELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLL---PESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDA----VEDFMIQYGEALSNIGFSTRDIMRLSAYG 228
8 -31.6004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  10  9....................................................ELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEML---PDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLM------LNEVADDARELGMERESLVEDFMIAYLENIGFTTREIMRMSAYG 227
9 -31.4004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  9....................................................EFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAELL---PEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHEGKVVTCLLIQALIIEAFAIAAYNIYIPVA-DDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKM------LNQVQGDAKVLGMEKEALVEDFMISYLSNIGFSTMRMSSYGLAG 230
10 -31.1005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  3....................................................QLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRI---PADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKHDGNRAECLVIQGLIVECFAVAAYRHYLPVA-DAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLT------LAMLQSLAADMRQIGMDPVETLASFSELFLESVGFEAMRAAARMVGS 228
11 -30.4005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  11  37......................................................DYQSETYKDAYSRINAIVIEGEDEAANNYVRLAELM---PEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAGNIVTCLLIQALIIEAFAISAYNVYIPHA-DDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVWRM------LDEVAGDALVLGMEKEALMEDFTIAYLQNIGFSTRETLRMLTAG 253
12 -28.7005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  10  37......................................................DFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELL---ADKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTQGQIVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKL------LNAVADDARVLGMEKDALIEDFMIAYLGNIGFNNRDIMRMSAQG 253
13 -27.3002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  12  2............................................................MGYTLAEFLAHAIALETEAAERYVELADMMEANLDTATVFRDMARFSTLHGDEIKQRSRALELPKLQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS.................................................................... 153
14 -26.9004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  1MAVDDDDKMVHHDGFQTVKATIDEKAKRNGKWNPADI----------SQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQGEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKRYADDSPEAVIRAATVYNMIVESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEI--RHYVIKQFNLRKKQISRTKRVDVVEGL.. 303
15 -26.7001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  15  8...............................................................KVSDILTVAIRLEEEGERFYRELSEHF--NGEIKKTFLELADQERIHAEIFRKMSDQENWDEVGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................ 150
16 -26.5005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  10  2..................................................DKNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFE-KAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITETVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKRLAVQIVKEGKDKIEPLGYSIQELVNLM----------EELKKARINKILGS............... 212
17 -26.4002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  12  20...............................................................SLEELLGMAIKAEIGAREFYKSLAEKI-KIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQPVAEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.................................................................... 165
18 -26.2003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  10  20..............ASLPLKLFAG--GNAKFWHPADI----------TRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRARLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYSPAAQVRASVTYNHIVETGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDANWTVFETRMNELIPLALRLIEEGFALYGDQPPFDLSKDQYSTDKGMRRFGTISNARGRPVAEI... 291
19 -25.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  11......................................................VVNIGEANPRFAQLLLEQFGGATGELSAALQYWVQSFENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL..................................................................... 180
20 -25.2003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  10  12......................................................GSHMQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQ-----IFKNIAESEQTHMDAVKYLLEKYNIPDPVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNY........................................................................ 162
21 -25.2002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  15  28EEEGIGSATLGRLVRAWPRRAAVV-YDTLVPDYPLEIVPFAEHPLFLAAE----HQRQRVLTGMWIGYNERVIATEQLIAEPAFDLVMHGSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELRPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLARDATQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEA---EQDLSALLLELNAAGIRGAEEIVGDLRKMVEQLGLDDAVDFD..... 332
22 -25.1003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  10  7......................................................SLPKQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQ-----IFKNIAESEQTHMDAVKYLLEKYNIPDPVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNY........................................................................ 157
23 -24.1003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  10  9LRENPRRFVIFPIEYHDIWQMYKKAEASF--WTAEAV----------SKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFKKKADWALRWIGDKEATYGERVVAFAAVESGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTL----KQYIEFVADRLMLELGFSKVFRVENPF.. 283
24 -24.1004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  10  9......................................................KEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVN-APTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKIERISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKDCSFEP-LSTLASSMIKEEESHIFFSQNELRNYQNKNRMQGAFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYN........... 220
25 -24.0005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  14  1...AIAENAVINRL-KREEPDVYALFDPGRPDFREDMIPFRGHPIWERLS----ETRSRLLSWGWVAYNRNTVLIEQRIANPAFELVIGGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRMRPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLADDQEQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEA---APDFTTWESIVAFEGVPGWEKAAAEIHTLLTEMDVLD.......... 297
26 -23.4005n5e_e mol:protein length:99 PFC_05175  ali model follow..  17  19.................................................................................................................................................EELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKG.............................................................. 86
27 -23.2002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  10  33LRKSSRRFVIFPIQYPDIWKMYKQAQA--SFWTAEEV----------SKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFKKKADWALRWIADRKSTFGERVVAFAAVESGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCIL----KQYIEFVADRLLVELGFSKVFQAENPF.. 307
28 -22.7002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  33LSKETDRFTLYPILYPDVWDFYKKAEASF--WTAEEI----------SSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLKNKALWAAKWINDTNSFAERIVANACVESGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRL----SQYIEFVADRLLECLGSPKIFHAKNPF.. 306
29 -22.7003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  1.............MRSTQEERFEQRIAQETAIEPQDWMP-------------------DAYRKTLIRQIGQHAHSEIVGMLPEGNWITR-APTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKDGRMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGP-YARAMVKICKEESFHQRQGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKRQRFVDNTVPQVEMLGMT........... 241
30 -22.7002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  11  31...............HDIWQMYKKAEASF--WTAEEV----------SKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFKKKADWALRWIGDKEATYGERVVAFAAVESGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTL----KQYIEFVADRLMLELGFSKVFRVENPF.. 290
31 -22.1003sid_A mol:protein length:180 Symerythrin  ali model follow..  11  24..............................................................NNTDANAASSIEVEMYECDCMYPTFAEIARRPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLVSTIESQIDAVASDSRGLRRALETALEVETIESQAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE...................................................................... 178
32 -22.1004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  1..........MGSSGSTEEQRFDQRIAQETAIEPQDWMP-------------------DAYRKTLIRQIGQHAHSEIVGMLPEGNWITR-APTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKDGQMKYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGP-YARAMVKICKEESFHQRQGFEACMALAQGNEAQRQMLQDAINRFWWPALMMFGPNDDNSPNSARSMAWKRQRFVDNTVPQVEILGMT........... 244
33 -22.0002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  14  23.............................................................IKKLVDKLVKATAAEFTTYYYYTILRMHLTG-EGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQDISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYDPRTYDLAQRILQEEIEHEAWFLELLYG......................................................................... 169
34 -21.7002hz8_A mol:protein length:115 De novo designed diiron protein  ali model follow..  13  2.........................................................................................................DELRELLKAEQ-----------QAIKIYKEVLKKAKEGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQG........................................................................ 88
35 -21.7003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model follow..  15...............................................................................................................................................DETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTN......................................................... 89
36 -21.5001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  11  1MSNEYDEYIANHNWNVIPDEKDLEVWDRLTGWLPEKI----------SNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQIENENLQRKAKIIMSYYNGDDPLKKKVASTLLEYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKATFDLMYDLYENEIEYTEDIYDDLGWTEDVKRFLRYNANKALNNLGYEG.......... 279
37 -21.5001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  11  1MKLSRISAINWNKIQDKDLEVWNRLTSN---WLPEKV----------SNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEEENPPLQRKAQIILAHYVSDEPLKKKIASVFLEYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEAL......... 270
38 -21.3003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  11  50...............PDIWKMYKQAQAS---WTAEEV----------SKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFKKKADWALRWIADRKSTFGERVVAFAAVESGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCIL----KQYIEFVADRLLVELGFSKVFQAENPF.. 309
39 -21.3004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  12  1MQTYYKAINWNAIEDVIDKSTWEKLTEQ---WLDTRI----------SNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSENTNPYLQKKAEIINEIYLNGTALEKKIASVFLEYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEMYDLLYTLYENEEGYTESLYDTVGWTEEVKTFLRYNANKALMNLGQDPL......... 269
40 -21.2001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  12  1MTGNAKLIDRVSAINEKDAEVWDRLTGN---WLPEKV----------SNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIENRNLQRKAEIVLQSYRGDEPLKRKVASTLLEYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDTYELLFELYDNEVEYTQDLYDEVGLTEDVKKFLRYNANKALMNLGYEAL......... 275
41 -21.2003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  11  1MKLSRISAINWNKISDKDLEVWNRLTSN---WLPEKV----------SNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLEYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEP.......... 269
42 -21.0002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  12  5..........................................................SHDVKELIEGLNEDLAGEYSAIIMYNHNAATVSGIQVLKPFFESEISDEQGHALYLAEKIKTLGGTP----------TTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQANMTELVVKLEDMIADETNHMEELDRLLND......................................................................... 143
43 -21.0002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  34LNKESNRFTLHPIMYPEVWNFYKKAEAS---WTAEEI----------SSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNIKNKALWAAKWINDTNSFAERIVANACVESGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRL----SQYIEFVADRLLECLGCSKVFHSKNPF.. 307
44 -20.9004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  10  6.........................................................AQLKGSKTEENLKYAFAGESQANRRYLYFASKADVENDIAALFRSTAEGETGHAHGHLEYLEAVGDPATGLPFG--------------TSRQNLQSAIAGETHEYTDMYPGMAKTAGFEEIANWFETLAKAERSHANRYTKALDGLVD...................................................................... 144
45 -20.9006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  15MSIFDKRVNYKPFEYPEVLQFTEAINKAY--WVHTEVDFTADTQDFH-------AHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHF-PKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYND-RRVDYLSNVLKDTKSQDNRKYMVSLILFSILIESQFAILLSFTRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAV-ESDILDWIFEEGEIESVNFMKFRIDESLKQINIPVIFDVKV.... 296
46 -20.9001jku_A mol:protein length:266 pseudocatalase  ali model follow..  11  2.............................................FKHTRKLQYNAKPDRSDPIMARRLQESL--ETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGI.................................................................. 198
47 -20.7005da5_A mol:protein length:116 Rru_A0973  ali model follow..  22....................................................................................................................................................RHRAIVSVMEELEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRTYLFTE......................................................... 91
48 -20.6006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  12  28FKGKMRSVNWNVVNDEKDLEVWNRITQN---WLPEKI----------SNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQINTETLQERAKALIPYYVNDDPLKSKVAAALMPYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEVFKLLYELIDLEKAYLKELYEDFGLADDAIRFSVYNAGKFLQNLGYDSP......... 296
49 -20.6004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  51...............KWAWEHYLNGCAN---WLPTEIPMGKDIELWKSDRL------SEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNPNFRTDSVEGLQEFVKNLVGYYIIMEYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQRRLERIGLKPIYHTKN.... 327
50 -20.6001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  10  28LMENSRRFVMFPIKYHEIWAAYKKVEAS---WTAEEI----------AKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIP-KHKAAFIERWISNDDSLYAERLVAFAAKEAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKS----HTYIEFVADGLLQGFGNEKYYNAVNPF.. 301
51 -20.5004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  14  12...............DFSLMFWKQNIAQ---WTEEEI----------SSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNHPLKPEVTKKELYMAMVASVFLEYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKTQELLMELYEIEMAYTEEIYTSIGLVEDVNRFVRYNANKGLMNLGLEPK......... 273
52 -20.4001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  10  1.....................................................MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDD-GELAANMKLIAIDEMRHAENFAERIKELGGEP---------TTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCGDIVTARLFERIIEEEQAHLTYYENIGSHI........................................................................ 146
53 -20.2001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  10  8.KAATNRAPVGVEPQEVHKWLQTKYPTKYHMANETKYARMEAAKDERQFGTLLGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDSA-TAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDMKRVFADGFISGDAVECSVNLQLVGEACFTVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKFNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWLGKYGVESPRSLRDAK.. 331
54 -20.1001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  14  2.........................................................KDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPI-------------GTLEQMIESAIAGETYEWT-FAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQL........................................................................ 140
55 -20.0006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  11  47...............EKDLEVWNRVTQN---WLPENI----------SNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQIDNEALQARPKALIPFYTADDPLKSKIAAALMPYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPEKQAEMKQVFDLLDKMIGLEKTYLHQLYDGFGLADEAIRFSLYNAGKFLQNLGYESP......... 300
56 -19.9002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  16..........................................................KEQDPNAAAAVQALL--EMSTLMYQSFNFRGKKALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGVDPWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKM................................................................ 207
57 -19.7002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  13  24NGKSSNVLNWDDVRFSWAYPLYKNMLAN---WTPFEI----------SHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYL-TDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQRNEFIIDGYEKFVDNPTPKTFLESIVYDVILEYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISKRAVQLGMEKP......... 301
58 -19.6002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  1......................................................ASGSMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQDN-TELAAHTRAESFDEMRHAEEITDRILLLDGLP---------NYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................ 145
59 -19.5002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  13  11.........................................................GKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVEG-ADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFELARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTNDYTTCDIAKHILAEEEEHEQDLQDYLTDI........................................................................ 160
60 -19.5003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  10  2...........................................................QGDAKVIEYLNAALRSELTAVSQYWLHYRLQED-GSIAHKSRKESIEEMHHADKLIQRIIFLGGHP---------NLQRLNPLRIGQTLRETLDADLAAEHDARTLYIEARDHCRDYPSKMLFEELIADEEGHIDYLETQIDLM........................................................................ 141
61 -19.4001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  10  89...............HDIWQMYKKAEAS---WTAEEV----------SKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEPCVKKKADWALRWIGDKEATYGERVVAFAAVESGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTL----KQYIEFVADRLMLELGFNKIFRVENPF.. 348
62 -19.4005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  2...........................................................QGDPEVIEFLNEQLTAELTAINQYFLHAKLQDH-TKLAKYTRAESFDEMRHAEVLTDRILLLDGLP---------NYQRLFHVRVGQSVTEMFQADREVELEAIDRLRRGIEVMHDITSANVFEAILADEEHHIDYLETQLDLI........................................................................ 141
63 -19.4001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  11  93LNEDKERTVLFPIKYHEIWQAYKRAEAS---WTAEEIDLSKDIHDWN-------NRMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFGEKAEWALRWIQDADALFGERLVAFASIESGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADL----NQYVEFVADRLLVAFGNKKYYKVENPF.. 368
64 -19.3003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  10  2...........................................................QGDPDVLKLLNEQLTSELTAINQYFLHSKMQDN-TELAEHTRAESFEEMRHAETITDRILLLDGLP---------NYQRLFSLRVGQTLREQFEADLAIEYEVLERLKPGIVLCQDATSARLLEQILADEETHIDYLETQLQLM........................................................................ 141
65 -19.1002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  27.KPATRYQEASYDIEAKTNFHYRP---RMEDWCAVAYVGNRAKMQESAETSFGLTRLSEETQKQLLRLLVPLRHVELGANMNNAKIAG-DATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKMRKLVEDTLVVDDWFELTLVQNILIDPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNR-ELLQKWIDHWEPQAYEALK----PLAEASVGIDGLNEARAELSARLKKFELQ........... 327
66 -19.0003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  11  12......................................................GPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLND-TRLAKKEREESIEEMHHADKLIDRIIFLEGFP---------NLQTVSPLRIGQNVKEVLEADLKGEYDARASYKESCDKLGDYVSKQLFDELLADEEGHIDFLETQLDLL........................................................................ 156
67 -19.0003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  13  1MAMHPRKDELTRATEQLFPERMSGHMGPLEKWESYDIQREKDAGAYSVKAALERAKIYENSDPGWISTLKSHYGAEYAAVTGEGRMAR-FSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAKHFFDDIITGRDAISVAIMLTFSFENMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKVDMA---VLTGPVMDYYTPLEDRSQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLFL.. 321
68 -19.0001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  10  2...........................................................KGDAKVIEFLNAALRSELTAISQYWVHFRLQED-AKMAKKSREESIEEMGHADKIIARILFLEGHP---------NLQKLDPLRIGEGPRETLECDLAGEHDALKLYREARDYCGDIVSKNIFESLITDEEGHVDFLETQISLY........................................................................ 141
69 -18.9004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  12  2...........................................................KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLED-KDLAKKWRAESIEEMAHADKFVERILFLEGLP---------NLQTLDPLRIGQTVKEVLESDLAAEREARALYQEGAAYAGDFPSKNLFEELMGDEEHHIDFLETQLDLV........................................................................ 141
70 -18.9005n5f_A mol:protein length:98 encapsulated ferritin  ali model follow..  15  16...............................................................................................................................................EETKNMHRALVTLIEELEAVDWYQQRADACSEPGLHDVLIHNKNEEVEHAMMTLEWIRRR........................................................................ 75
71 -18.8002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  1MVSKNKKLNLKDKYQYLTRDM-DFEGIKITDWSQWAYWKYQAEKEKKLYAIFDAFAQNNGHQNALKLFISGISPLEHAAFQGYSKVGR-QFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDRVWYLSVPKSLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNVPIVQRWIDKWF----RGFRLLSLVSMMMDYMLPNKVMSWSEAWEVYYEQNGGALFKDLERY... 313
72 -18.7003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  12  1MINYSERINVNLNENKTLQRALEQWQPSFLNWWYLRTAVSVDPKGWEHKGQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLT-APSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGEALLERRSGDFNEKTPDWLSFFMFTFITDRDGKFQLASLAESAFDP-LARTCKFMLTEEAHHLFVGESGIARVIQRTCEVMKELGTDDPAKLRAAGV--AEISSNAATYYTNGLKGIGDDHKLQNSEYEVMDVA........... 341
73 -18.7003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  10  4...........................................................QGDPDVLRLLNEQLTSELTAINQYFLHSKMQDN-TELAAHTRAESFDEMRHAEEITDRILLLDGLP---------NYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................ 143
74 -18.5004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  1MGSSSSGLVPRGSHDDFTQMFYNQNVKQ---WLPEEI----------NGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETQKKAQMIVGLYKAIQKDDEISLFKAMVASVYLEYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEKKAELREAIDLLNQLYENELEYTEDLYDQVGLSHDVKKFIRYNANKALMNLGFDPYFEEED.... 296
75 -18.4005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  12  2...........................................................KGDKTVIQFLNKQLTNELTAINQYFLHARMLNH-DKLGKHEYEESIGEMKHADRLIARIFMLDGLP---------NLQDLHKLLIGEDVPELLACDLKLEQAAHATVREAIAHCRDYVSRDLFQDILDDTEEHIDYLETQIDLI........................................................................ 141

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.