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Query: 1zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70
# Score Template Links and tools%idFirst MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYGTKRGKAALast
1 -45.9001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model  100  1MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYGTKRGKAA 71
2 -40.4001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  49  1..SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTSDSN.. 67
3 -39.1001sq8_A mol:protein length:64 dh434  ali model follow..  49  1.MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAKRPRFLPELARALGVAVDWLLNG....... 63
4 -38.9002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  50  1..SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGT...... 63
5 -33.8001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  30  3TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETPNGENLLALSKALQCSPDYLLKGDLSQTN. 73
6 -31.2002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  25  1.MELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETPVVVKYIAFLRSKGVDLNALFDRIIVNK.. 69
7 -30.8003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  23  8QQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSPSLDMLVKVAELLNVDPRQLINGKIK.... 75
8 -30.3005a7l_A mol:protein length:80 CI  ali model follow..  14  3.TDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQPDQNRIYLLAKTLGVSEAWLMGFDVPM... 79
9 -30.0003zhi_A mol:protein length:83 CI  ali model follow..  17  3KTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQPDQNRIYLLAKTLGVSEAWLM......... 74
10 -29.7003zhm_A mol:protein length:79 CI  ali model follow..  16  2.TDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQPDQNRIYLLAKTLGVSEAWLM......... 72
11 -29.3003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  25  6ERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVPSLETLFDIAEALNVDVRELIVSTKR.... 73
12 -29.3002xiu_A mol:protein length:66 CYLR2  ali model follow..  28  2...IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKNPSLQLALKIAYYLNCPLEDIFQWQPE.... 66
13 -29.2001utx_A mol:protein length:66 CYLR2  ali model follow..  26  2...IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKNPSLQLALKIAYYLNTPLEDIFQWQPE.... 66
14 -29.1003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  23  15QSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTIKDSLLSKYMSAFNVKYDDIFLGNEYEN.. 84
15 -28.7004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  27  9.TQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCD......... 70
16 -28.3001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  25  12.LEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAPNNQVLGKIERAIGLKLRGKDIGK...... 76
17 -28.1002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  16  8VTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLPTISQARQLEKILGIKLVTPLENNEESEKE 79
18 -27.9002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  24  10PTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDAKNASPES. 80
19 -27.7005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  17  9PQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENFPIYLLLHFYIEGQITDRQLADLRGKIRE. 80
20 -27.7003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  14  7QHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETPDIEKLIRLATYFHLSIDELVGYVQEDKV. 77
21 -27.7001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  24  2...IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.. 69
22 -27.5003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  22  2...LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQ. 73
23 -27.4002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  22  7KAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAPRMGKVQALADYFNINKSDLIEDKKLNID. 77
24 -26.8005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  24  14.TQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDTKNASPEST 84
25 -26.8004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  25  2...LGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYEREHSPNMRTSEQLAMVLQVPMAYLYCPEDE.... 70
26 -26.4002l49_A mol:protein length:99 C protein  ali model follow..  18  3.NTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSPPTDVMMNILQTPQFTKYTLWFMTNQIAPE 73
27 -26.3003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  12  10FRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKS 81
28 -26.0003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  23  3.SMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNTNPSIQFLEKVSAVLDVSVHTLLDEKHETE.. 72
29 -26.0004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  25  41QQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGEDVYISTVFKILDGLGIDIVSAQTSDTETNG. 110
30 -25.5001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  18  17.RRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINANAYNAALLAKILKVSVEEFS......... 78
31 -25.4001y7y_A mol:protein length:74 C.AhdI  ali model follow..  23  11LVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGRNVSLVNILKLATALDIEPRELFC........ 74
32 -25.4002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  20  2...IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSVSTELIDIICQKFNVSYVDIVGEDKMLNP. 69
33 -25.1003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  16  11.RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINANAYNAALLAKILKVSVEEFS......... 72
34 -25.1002jvl_A mol:protein length:107 TrMBF1  ali model follow..  20  33.KEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTAPDQNILSKMERVLNVKLRGANIGA...... 99
35 -24.6002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  25  9.RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFRRLDALELFELLEVVASRLGLPMD........ 71
36 -24.6002b5a_A mol:protein length:77 C.BclI  ali model follow..  23  8KRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGRNISLINIHKICAALDIPASTFFRKMEEEN.. 77
37 -24.5004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  22  28AEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKQLDIMIAILMALDLTEQIDLFI......... 90
38 -24.4002fjr_A mol:protein length:189 Repressor protein CI  ali model follow..  13  7NVDVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGEGEA... 72
39 -24.4001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  21  16.RRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINANAYNAALLAKILKVSVEEF.......... 76
40 -24.4004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  26  9LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNRNLTIKSLELIMKGLEVSDVVFFE........ 72
41 -24.3002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  17  6AKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGRAVTVQRLAELADFYGVPVQELL......... 70
42 -24.3003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  22  13.QALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENARRLDVIEFMDFCRGIGTDPYALLSKLEAMTPS 83
43 -24.1004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  26  9LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNRNLTIKSLELIMKGLEVSDVVFFE........ 72
44 -23.9004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  26  9LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNANLTIKSLELIMKGLEVSDVVFFE........ 72
45 -23.9004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  26  9LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNRNLTIKALELIMKGLEVSDVVFFE........ 72
46 -23.8004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  26  9LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNRNLTIKSLELIMKGLEVSDVVFFE........ 72
47 -23.5003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  17  6.EFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSPTITTIRKVCGTLGISVHDFFD........ 69
48 -23.3003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  26  20LSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNRNLTIKSLELIMKGLEVSDVVFFE........ 83
49 -23.3005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  14  18.QIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQCCDIQLAHRICDTLGISHEYANELTSIPLRG 88
50 -23.0003fya_A mol:protein length:99 Regulatory protein  ali model follow..  26  20LSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNRNLTIKSLELIMKGLEVSDVVFFE........ 83
51 -22.6003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  19  19RAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKWNIALSNIEKMAAALGVAAYQLLL........ 82
52 -22.6002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  22  15.QRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRTPAFFTIAAVARVLDLSLDDVAAVVTFGPVS 84
53 -22.3003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  26  60LKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKSLQDKTVQKLANALGVSPLEVRAAFERR... 128
54 -22.1001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  24  9.TGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGTLTQLGRIAHVLGTSIGALTPPAGNDLDD 80
55 -21.9003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  19  13.VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRRRLDVIEFAKWMAACEGL.............. 69
56 -21.7004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  12  12.ETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQPLPEQAARVVAEKLDLDEDAIRLLQTIPLRG 82
57 -21.6003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  20  27.EALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGKEVSSELLASVCHALGASVADVLIEAAGSMA. 96
58 -21.4003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  16  15ARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINLNAYNAALLAKILKVSVEEFSPSIAREIYE 86
59 -21.3005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  18  9.EVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGKEASSELLSAICDALDVPLSRVLTDAGESMA. 78
60 -21.2003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  21  4MRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEEPDPAAATALAEALSVEPSQLAADAHRNLT. 75
61 -21.2001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  11  12.LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQALPADAARLVGAKLDLDEDSIL......... 73
62 -21.0006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  11  13LIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKKISPSLIEKAVNIWPVNERDFYIVSDDCSSG 84
63 -20.5002qfc_A mol:protein length:293 PlcR protein  ali model follow..  23  3AEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVPSMDILQGIAAKLQIPIIHFYE........ 65
64 -20.0003fmy_A mol:protein length:73 HTH-type transcriptional regulator MQSA (ygiT/b3021)  ali model follow..  22  13....PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELL.......... 69
65 -19.9006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  21  236.GDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPRAEWPELSALAEALGVSVRELLVPHTTTEAD 306
66 -19.6001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  18  10.SQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESPTIATLWKIASGLEASFSAFFANDPQLLSS 80
67 -19.6003tyr_A mol:protein length:88 Transcriptional regulator  ali model follow..  23  16MRVSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGDIIE........ 78
68 -19.3005j9i_A mol:protein length:104 Antitoxin igA-2  ali model follow..  12  42....PDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNGQAVTLLKLVQRHPETL.......... 98
69 -19.1002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  12  5ISDIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDK............................... 44
70 -19.1002aw6_A mol:protein length:317 PrgX  ali model follow..  17  1MFKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPSVEELSKFSERLGVNFFEILN........ 63
71 -18.9005fd4_A mol:protein length:324 ComR  ali model follow..  16  22DKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASPTFSKIQYIATRLGMGLYELMPDYVSLPER 94
72 -18.4005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  22  4KDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGESPSLDRLSYIAKRLGKSMTELL......... 67
73 -18.3004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  17  1MGSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHITLSLFEEILKRIMVPLDEFFF........ 63
74 -18.1002ppx_A mol:protein length:99 Uncharacterized protein Atu1735  ali model follow..  22  32....MPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGT.......... 88
75 -17.9002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  17  12..QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDSLESLIDMITSIGLKVE............ 70
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205