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Query: 2a0l_A mol:protein length:241 Voltage-gated potassium channel, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LGLSDLGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKILVGEPEPSLast
1 -102.0002a0l_A mol:protein length:241 Voltage-gated potassium channel  ali model  100  1LGLSDLGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKILVGEPEPS 241
2 -70.1005vms_A mol:protein length:548 Potassium voltage-gated channel subfamily KQT member 1  ali model follow..  22  28.....RTNIQGRVYNFLERPTYHFTVFLIVLICLIFSVLSTIQQYNNLATETLFWMEIVLVVFFGAEYVVRLWSAGCRSKYVGVSVIDLIVVVASVIVLCVGSNTSAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQ--ELITTLYIGFLGLIFSSYFVYLAEKDAIEYQFGSYADALWWGVVTVTTIGYGDKVPQTWIGKTIASCFSVFAISFFALPAGILGSGFALKVQQKQRQK 287
3 -69.0002a79_B mol:protein length:499 Potassium voltage-gated channel subfamily A member 2  ali model follow..  23  143......NEFQRQVWLLFEYPESSGPARIVILISIVSFCLETLPIFRTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNNIIDIVAIIPYFITLGTEMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMR--ELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGE 424
4 -65.9002r9r_B mol:protein length:514 Paddle chimera voltage gated potassium channel Kv1.2-Kv2.1  ali model follow..  21  152......NEFQRQVWLLFEYPESSGPARIVILISIVSFCLETLPIFRTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNNIIDIVAIIPYYVTIFLTNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMR--ELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGE 429
5 -64.9006ebk_B mol:protein length:513 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily B member 2 chimera  ali model follow..  21  153......NEFQRQVWLLFEYPESSGPARIVILISIVSFCLETLPIFRTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNNIIDIVAIIPYYVTIFLQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMR--ELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGE 430
6 -63.9005wie_B mol:protein length:532 Potassium voltage-gated channel subfamily A member 2,Potassium voltage-gated channel subfamily A member 2  ali model follow..  21  180......NEFQRQVWLLFEYPESSGPARIVILISIVSFCLETLPIFRTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNNIIDIVAIIPYYVTIFLQNVRRVVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMR--ELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIWSNFNYFYHRETEGE 457
7 -59.9002a9h_A mol:protein length:155 Voltage-gated potassium channel  ali model follow..  25  8....................................................................................................IEGRGRLIKHMPPMLSGLLARLVKLLLGRHGSALHWR------AAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQERRGHF 142
8 -59.5005e1a_C mol:protein length:124 pH-gated potassium channel KcsA  ali model follow..  25  1...........................................................................................................MAPMLSGLLARLVKLLLGRHGSAC---------HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGCEQERRGH. 124
9 -59.5003ogc_C mol:protein length:131 Voltage-gated potassium channel  ali model follow..  24  1..........................................................................................................SMPPMLSGLLARLVKL---------LLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH. 125
10 -59.5004lcu_C mol:protein length:131 pH-gated potassium channel KcsA  ali model follow..  25  1..........................................................................................................SMPPMLSGLLARLVKLLLGRHG---------SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGRAQERRGH. 125
11 -59.4004lbe_C mol:protein length:130 pH-gated potassium channel KcsA  ali model follow..  25  1...........................................................................................................MPPMLSGLLARLVKLLLGRHGSAL---------HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERAGH. 124
12 -59.3002nlj_C mol:protein length:124 Voltage-gated potassium channel  ali model follow..  24  1...........................................................................................................MAPMLSGLLARLVKL---------LLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWFVGREQERRGH. 124
13 -59.2002atk_C mol:protein length:124 Voltage-gated potassium channel  ali model follow..  25  1...........................................................................................................MAPMLSGLLARLVKLLLGRHG---------SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH. 124
14 -59.1001j95_A mol:protein length:125 VOLTAGE-GATED POTASSIUM CHANNEL  ali model follow..  25  1...........................................................................................................MPPMLSGLLARLVKLLLGRHG---------SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH. 124
15 -59.1005ebw_C mol:protein length:123 pH-gated potassium channel KcsA  ali model follow..  24  1...........................................................................................................MAPMLSGLLARLVKL---------LLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRG.. 123
16 -59.0005ebl_C mol:protein length:125 pH-gated potassium channel KcsA  ali model follow..  24  1...........................................................................................................MAPMLSGLLARLVKLLLGRHGSAL---------HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATGVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH. 124
17 -59.0003hpl_C mol:protein length:124 Voltage-gated potassium channel  ali model follow..  25  1...........................................................................................................MAPMLSGLLARLVKLLLGRHG---------SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQERRGH. 124
18 -58.9003ifx_A mol:protein length:129 Voltage-gated potassium channel  ali model follow..  25  1...........................................................................................................MPPMLSGLLARLVKL---------LLGRHGSALHWRAAGAATVLLVIVLLAGSYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRG.. 123
19 -58.5003f5w_C mol:protein length:104 Voltage-gated potassium channel  ali model follow..  27  3..........................................................................................................................................ALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQEQQQQGQ. 104
20 -58.5005ec1_C mol:protein length:125 pH-gated potassium channel KcsA  ali model follow..  24  1...........................................................................................................MAPMLSGLLARLVKL---------LLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTXGYGDLCPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGH. 124
21 -58.4002k1e_A mol:protein length:103 water soluble analogue of potassium channel, KcsA  ali model follow..  26  1.........................................................................................................................................SADHEREAQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREEERRGH. 103
22 -58.4005vkh_C mol:protein length:103 pH-gated potassium channel KcsA  ali model follow..  27  1.........................................................................................................................................SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLAPVTLWGRCVAVVVMVAGITSAGLVTAALATWFVGREQERRGH. 103
23 -58.1004uuj_C mol:protein length:111 VOLTAGE-GATED POTASSIUM CHANNEL KCSA  ali model follow..  25  4....................................................................................................................................ALLLGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGH. 111
24 -56.8005vk6_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  28  3...............................................................................................................................................CAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQCQQQ.... 96
25 -56.7006by3_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  27  3...............................................................................................................................................CAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATAVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQCQQQ.... 96
26 -56.7005vke_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  28  3...............................................................................................................................................CAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLAPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGQCQQQ.... 96
27 -55.4003pjs_K mol:protein length:166 Voltage-gated potassium channel  ali model follow..  24  1...........................................................................................................MPPMLSGLLARLVKL---------LLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQEQQQQQQF 125
28 -54.8001f6g_A mol:protein length:160 VOLTAGE-GATED POTASSIUM CHANNEL  ali model follow..  24  1...........................................................................................................MPPMLSGLLARLVKL---------LLGRHGSALHWAAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQERRGHF 125
29 -54.3004chv_A mol:protein length:361 CYCLIC NUCLEOTIDE-GATED POTASSIUM CHANNEL MLL3241  ali model follow..  20  10.....................YAPLNAVLAAPGLLAVAALTIPDMSGR----SRLALAALLAVIWGAYLLQLAATLLGVVRDRTIAIDVLAVLVPLAAFLLD----GSPDWSLYCAVWLLKPLRDSTFFPVLGRVLANEAR--NLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGD... 222
30 -52.9003eff_K mol:protein length:139 Voltage-gated potassium channel  ali model follow..  26  1.........................................................................................................................................SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQERRGHF 104
31 -48.6004h33_A mol:protein length:137 Lmo2059 protein  ali model follow..  31  1.................................................................................................................MRYIVPIYSFFRSNG----------------LNRFLMIFVLLVIIIPVPMVFIE-----PEINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQ 107
32 -48.0002kyh_A mol:protein length:147 Voltage-gated potassium channel  ali model follow..  99  3.GLSDLGGRVRNIGDVMEHPLVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGDPAGYVKKTLYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKL.................................................................................................. 144
33 -41.4005tj6_A mol:protein length:1070 High conductance calcium-activated potassium channel  ali model follow..  17  102.....................LVGLVFLLSIASLIIYFIDASTNTSVETSSTTQQVDLAFNVFFMIYFFIRFVAANDKLWFWVESFVDYFTIPPSFVAIYLDRNWLGLRFLRALRLMSIPDILTYLN--------VLKTSTLIRLVQLVVSFVSLWLTAAGFLHLLEFDFGNAQHLTYWECLYFLMVTMSTVGFGDIFATTVLGRTFVVIFIMIFIGLFASFIPEIAEILGKRQKYGGS.. 324
34 -36.3006cnm_A mol:protein length:427 Intermediate conductance calcium-activated potassium channel protein 4  ali model follow..  17  66.....................SISTFLLLCLIVAFHAKEVQLFMTDNGLRDWRVALTGRQAAQIVLELVVCGLHPAPVRGPPCVQDLGAPLTSPQPWPGFLGQGEALLSLAMLLRLYLVPRAVLLRSGVLLHWFVAKLYMNTHPGRLLLGLTLGLWLTTAWVLSVAERQA-VNATGHLSDTLWLIPITFLTIGYGDVVPGTMWGKIVCLCTGVMGVCCTALLVAVVARKLEFNKAEKH... 297
35 -35.0003vou_A mol:protein length:148 Ion transport 2 domain protein, Voltage-gated sodium channel  ali model follow..  29  1......................................................................................................................MGSMLSFILTLKRMLKACLRAWKDKEFQVLFVLTFLTLTSGTIFYSTVEG--------RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKK 116
36 -34.2005cbf_A mol:protein length:129 Ion transport 2 domain protein  ali model follow..  14  1.........................................................................................................................MLGLTLMFKRFFGAVRTSWRDPSTRGAVLSLAIIVTAATIFYTLAEK--------SVIDSLFYAVSVGLPMGNGPLSPTLTLSKIFTLVYAILVVGLFVTVGGSLASAIVQNNTEKFKR. 112
37 -33.7003t4z_A mol:protein length:97 Potassium channel protein  ali model follow..  37  2...........................................................................................................................................AKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
38 -33.5002q67_A mol:protein length:114 Potassium channel protein  ali model follow..  30  1.........................................................................................................................MLSFLLTLKRMLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 104
39 -32.8004hyo_A mol:protein length:91 Calcium-gated potassium channel mthK  ali model follow..  26  7.............................................................................................................................................KVPATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLIN......... 90
40 -32.3004bgn_A mol:protein length:298 VOLTAGE-GATED SODIUM CHANNEL  ali model follow..  11  13......HPIEAWCDWLVNHPRFTSAIIVLIVINAIVVGMETYPGIYQPYQDWFYLIDRMILWVFTAEIILKLVATRPRYHFFKDNVFDFLIVA----SGHLFVGAQFVTVLRVLRVLRLLRAVTVIPSLRRLVSALLYTIPS--LGNIMLLMGLIFYIFGVMGTFLFRDVAPEYFGSLHLSLITLFQVVTLESWASGIMRPIMAEYFVAFILVGTFVIFNLFVGVIVSNVERAETEDAEQE 249
41 -31.9003t4d_A mol:protein length:97 Potassium channel protein  ali model follow..  35  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
42 -31.8003ouf_A mol:protein length:97 Potassium channel protein  ali model follow..  35  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
43 -31.6003tet_A mol:protein length:97 Potassium channel protein  ali model follow..  34  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
44 -31.4003tcu_A mol:protein length:97 Potassium channel protein  ali model follow..  34  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
45 -31.3003ldd_A mol:protein length:82 Calcium-gated potassium channel mthK  ali model follow..  26  2...............................................................................................................................................PATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGIGTFAVAVERLLEFL........... 81
46 -31.3003t2m_A mol:protein length:97 Potassium channel protein  ali model follow..  34  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
47 -31.3003t1c_A mol:protein length:97 Potassium channel protein  ali model follow..  34  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 87
48 -31.0003r65_A mol:protein length:82 Calcium-gated potassium channel mthK  ali model follow..  26  2...............................................................................................................................................PATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVQRLLEFL........... 81
49 -30.9003e83_A mol:protein length:96 Potassium channel protein  ali model follow..  32  2............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 86
50 -30.7005v4s_A mol:protein length:465 Transporter, cation channel family / cyclic nucleotide-binding domain multi-domain protein  ali model follow..  16  37.........................ILVFICIFWASLESPLRIVINYDPNLLLTCIYFFIDFVFALDILWNCFTP--IKDYLGS-IIDLIAALPLEYATTTLQQSQYPYLYLLLGVTRILKVFRISDILQRINLAFQPTPGILRLVLFAFWATLVAHWCAVGWLYVDLLDYQTGWSEYIIALYWTVATIATVGYGDITPSTDSQRIYTIFVMILGAGVYATVIGNIASILGSLDLAKAA.. 267
51 -30.6005u70_A mol:protein length:1201 Potassium channel subfamily T member 1  ali model follow..  14  130.........................QNYTLFNQSTKINWSHIFWVDRKLPLWAVQVSIALISFLETMLLIYLSYKGNIWEQIFRFILEMINTVPFIITIFWPPLIPVFLNCWLAKYALENMINDLHRAIQRTQSAM-----FNQVLILICTLLCLVFTGTCGIQHLERAGEKLSL----KSFYFCIVTFSTVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSGGN.. 341
52 -30.4002h8p_C mol:protein length:57 KcsA Channel  ali model follow..  29  1.........................................................................................................................................SALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVGY............................................... 57
53 -30.1005klb_A mol:protein length:285 Ion transport protein  ali model follow..  11  17......SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHR--ISFFKDSLFDFFVVAISLVPTSSG-----FEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG--MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLDDWSNGIVRPLME-FFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHI 250
54 -29.9005hvd_A mol:protein length:277 Ion transport protein  ali model follow..  14  2......SHMSRKIRDLIESKRFQNVITAIIVLNGAVLGLLTDTTLSASSQNLLERVDQLCLTIFIVEISLKIYAYGVR-GFFRSNLFDFVIVA-----IALMPAQGSLSVLRTFRIFRVMRLVSVIPTMRRVVQGMLLALPG--VGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVFFIPFIMLTTFTVLNLFIGICVDAMAITKEQEEEAK 236
55 -29.8003ous_A mol:protein length:82 Calcium-gated potassium channel mthK  ali model follow..  25  2...............................................................................................................................................PATRILLLVLAVIIYGTAGFHFIEG--------SWTVSLYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL........... 81
56 -29.7003rvy_A mol:protein length:285 Ion transport protein  ali model follow..  11  17......SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVA-----ISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG--MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLME-FFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQHI 250
57 -29.6005yua_A mol:protein length:271 Ion transport protein  ali model follow..  11  3......GSMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVA-----ISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG--MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHI 236
58 -29.5005vb2_A mol:protein length:285 Ion transport protein  ali model follow..  11  17......SHMYLRITNIVESSFFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVHRISFFKDPWSLFDFFVVA-----ISLVPTSSGFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPG--MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVFFVMINLYVAIIVDAMAILNQKEEQHI 250
59 -28.7006cjq_A mol:protein length:456 SthK cyclic nucleotide-gated potassium channel  ali model follow..  22  37...........................WILAVTLYYAIRIPLTLVFPSLFSPLLPLDILASLALIADIPLDLAFESRRTSGRKPTLPDLLAALPLDLLVFALHLPSPLSLLSLVRLLKLISVQRSATRIL----SYRINPALLRLLSLVGFILLAAHGIACGWMSLQPPSENPAGTRYLSAFYWTITTLTTIGYGDITPSTPTQTVYTIVIELLGAAMYGLVIGNIASLVSKLDAAKLL.. 250
60 -28.1004dxw_A mol:protein length:229 Ion transport protein  ali model follow..  13  1........MTPFFSSLKDNRIFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGEKQKADFFKSNIFDTVIVAISLIPIPNNSS---FLVLRLLRIFRVLRLISVIPELKQIIEAILESVRR--VFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYYFFSFIIICSITILNLVIAILVDVVIQKKLE..... 229
61 -27.9003k0d_A mol:protein length:96 Potassium channel protein NaK  ali model follow..  32  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGETP-PPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 86
62 -27.8005ek0_A mol:protein length:296 Chimera of bacterial Ion transport protein and human Sodium channel protein type 9 subunit alpha  ali model follow..  11  17......SHMYLRITNIVESSFFTKFIIYLIVLNMVTMMVEK-EGQSQHMTEVLYWINVVFIILFTIEIILRIYVHR--ISFFKDSLFDFVVVIISIVGMFLADSPTLFRVIRLARIGRILRLVTAVPQMRKIVSALISVIPG--MLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVFFIPFIFVVTFVMINLVVAIIVDAMAILNQKEEQHI 261
63 -27.7004zbm_A mol:protein length:97 Potassium channel protein  ali model follow..  32  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVGETPT-PQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 86
64 -26.2005va2_A mol:protein length:825 Potassium voltage-gated channel subfamily H member 2  ali model follow..  23  201......................DWLILLLVIYTAVFTPYSPPATECGYACQPLAVVDLIVDIMFIVDILINFRTT--AVHYFKG-LIDMVAAIPFDLLIFGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAA--------VLFLLMCTFALIAHWLACIWYAIGNMEQPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTAR.. 462
65 -26.1005u6o_A mol:protein length:660 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1  ali model follow..  16  142..........RFYWDLI--------MLIMMVGNLVIIPVGIT--FTEQTTTPWIIFNVASDTVFLLDLIMNFRTG--KMNYLKS-VVDFISSIPVDYIFLIVEKLRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLARIFNLIGMMLLLCHWDGCLQFLVNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQ.. 406
66 -26.1003k03_A mol:protein length:96 Potassium channel protein NaK  ali model follow..  32  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 86
67 -26.0005va1_A mol:protein length:795 Potassium voltage-gated channel subfamily H member 2  ali model follow..  23  171......................DWLILLLVIYTAVFTPYSAAATECGYACQPLAVVDLIVDIMFIVDILINFRTT--AVHYFKG-LIDMVAAIPFDLLIFGSGSEELIGLLKTARLLRLVRVARKLDRYSEYGAA--------VLFLLMCTFALIAHWLACIWYAIGNMEQPSIKDKYVTALYFTFSSLTSVGFGNVSPNTNSEKIFSICVMLIGSLMYASIFGNVSAIIQRLYSGTAR.. 432
68 -25.5003k06_A mol:protein length:96 Potassium channel protein NaK  ali model follow..  32  3............................................................................................................................................KDKEFQVLFVLTILTLISGTIFYSTVEG--------RPIDALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL......... 86
69 -24.9005k7l_A mol:protein length:857 Potassium voltage-gated channel subfamily H member 1  ali model follow..  17  222........................WIILILTFYTAILVPYNVSFKTRQNNVAWLVVDSIVDVIFLVDIVLNFHTT--RMNYLKT-VIDLLSCLPYVINAFENVDEGISSLFSSLKVVRLLRLGRVARKLDHYIE-----YGAAVLVLLVCVFGLAAHWMACIWYSIKWEGGPSKNSVYISSLYFTMTSLTSVGFGNIAPSTDIEKIFAVAIMMIGSLLYATIFGNVTTIFQQMYANTNR.. 484
70 -23.7005e1j_A mol:protein length:741 Two pore calcium channel protein 1  ali model follow..  14  417......SALSQQLRAFVRSPNFGYAISFILIINFIAVVVETTLDIEESSQKPWQVAEFVFGWIYVLEMALKIYTYGFE-NYWRENRFDFLVTWVIVIGETATSNGEWIRYLLLARMLRLIRLLMNVQRYRAFIATFITLIPSLPYLGTIFCVLCIYCSIGVQVFLAEDDYLLFNFNDYPNGMWQVWME----SYKDLTGTWWSITYFVSFYVITILLLLNLVVAFVLEAFFTELDLEEEEK 686
71 -23.7006c96_A mol:protein length:825 Two pore calcium channel protein 1  ali model follow..  9  430.......LIFKGINILVNSKAFQYFMYLVVAVNGVWILVETFMLKGGNFSKHVPWSYLVFLTIYGVELFMKVAGLGPV-EYLSSNLFDFSVTAFAFLGLLALTNMEPFYFIVVLRPLQLLRLFKLKKRYRNVLDTMFELLPRMSLGLTLLTFYYSFAIVGMEFFVEEGYYYLNNFDNILNSF-FELTVVNIIMEGVTSQTSHWSRLYFMTFYIVTMVVMTIIVAFILEAFVFRMNYSRKSQ 702
72 -22.6005h3o_A mol:protein length:738 Cyclic nucleotide-gated cation channel  ali model follow..  10  170..........NSTTQVE---CTYNMLTNMKEMPTYSQYPDLGWSKYWHFRMLWVFFDLLMDCVYLIDTFLNYRMG--TKAYWQS-RIDGISLIPLDYILGWPIPYINWRGLPILRLNRLIRYKRVRNCLERTETRSSMPN--FRVVVVVWYIVIIIHWNACLYFWIPDDITDTLLRRYVYSFYWSTLILTTIGEVPS-PVRNIEYAFVTLDLMCGVLIFATIVGNVGSMISNMSAARTE.. 428
73 -22.2004g7v_S mol:protein length:185 Voltage-sensor containing phosphatase  ali model follow..  14  19......GRVQFRVRAVIDHLGMRVFGVFLIFLDIILMIIDSLPGKSESSQSFYDGMALALSCYFMLDLGLRIFAYGPK-NFFTNEVADGLIIVVTFVVTIFDGLGELVVLARLLRVVRLARIFYSHQQMKASSRRTISQNKR................................................................................................... 169
74 -21.8005gjv_A mol:protein length:1873 Voltage-dependent L-type calcium channel subunit alpha-1S  ali model follow..  12  785.....TNKVRVLCHRIVNATWFTNFILLFILLSSAALAAEDPIRAESVRNQILGYFDIAFTSVFTVEIVLKMTTYGHKGSFCRNNILDLLVVAVSLISMGLESTISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNIVLVTTLLQFMLFKGKFFSCNDLSKNDFHFDNVLSAMMSLFTVSTFEGWPQLLYRAIDSNFFIIYIILIAFFMMNIFVGFVIVTFQEQGETEYKNC 1079
75 -21.6003rbz_A mol:protein length:340 Calcium-gated potassium channel mthK  ali model follow..  21  7...................................................................................................................................IIRKHLPRVLKVPATRILLLVLAVIIYGTAGFHFIEG-------ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLLTFLINREQMKLIG. 108
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;