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Query: 2a5h_A mol:protein length:416 L-lysine 2,3-aminomutase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNKRHVQELast
1 -119.0002a5h_A mol:protein length:416 L-lysine 2,3-aminomutase  ali model  100  1MINRRYELFKDVSDADWNDWRWQVRNRIETVEELKKYIPLTKEEEEGVAQCVKSLRMAITPYYLSLIDPNDPNDPVRKQAIPTALELNKAAADLEDPLHEDTDSPVPGLTHRYPDRVLLLITDMCSMYCRHCTRRRFAGQSDDSMPMERIDKAIDYIRNTPQVRDVLLSGGDALLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNMLKKYHPVWLNTHFNHPNEITEESTRACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSGYCVPTFVVDAPGGGGKTPVMPNYVISQSHDKVILRNFEGVITTYSEPINYTPGCNCDVCTGKKKVHKVGVAGLLNGEGMALEPVGLERNKRHVQE 416
2 -19.1006b4c_A mol:protein length:298 Viperin  ali model follow..  11  8...............................................................................................................QVPVSVNYHFSRKCNKECLFCFHTA---TTSHVEKPENAKRGLTLLKQ--GMKKINFAGGEPFLYPK-FLGEMIDFCKETLQLESVSIVTNGSL-----VKEQFLQKHGRNIDI-LAVSCDSFNEATQKLYEIGSWCQKYDIKFKLNTVVNKFNHLE-----DMNDHLNALQPFRWKCFQVLIVTGENDSDKTLRNAHSLT........................................................................................................ 204
3 -19.0005v1q_A mol:protein length:459 Radical SAM  ali model follow..  10  25....................RLEKFGGILINKTNFERIELDETEAFFLYLVQNHGIEIATSFFKKEIEMGKLERALSLNIYSDNEDSLNNPYETLQNARKHVAKLKKHNILSFPLELVIYPSMYCDLKCGFCFLAN--REDRNAKPAKDWERILRQAKDN-GVLSVSILGGEPTRYFD--IDNLLIACEELK---KTTITTNAQL-----IKKSTVEILAKSKYITPVLSLQTLDSKLDRQIKLAKYFNEVGKKCRINAVYTK---QSYEQIIELVDFCIENKIDRFSVANYSEVTGYTKIKYDLADLRRLNEYVTDYIT................................................................................................ 322
4 -18.5005vsl_A mol:protein length:318 Radical S-adenosyl methionine domain-containing protein 2  ali model follow..  16  15...................................................................................................QETQEDGNSTQRTTPVSVNYHFTRQCNYKCGFCFHTA---KTSFVLPLEEAKRGLLLLKQ--GLEKINFSGGEPFLQDREYLGKLVRFCKEELALPSVSIVSNGSL-----IRERWFKDYGEYLDI-LAISCDSFDEHVENLQKLRRWCRDYKVAFKINSVINRFNVD--EDMNEHIKALSPVRWKVFQCLLIEGENSGEDALREAERFLISNEEFETFLE................................................................................................ 238
5 -16.6006c8v_A mol:protein length:394 Coenzyme PQQ synthesis protein E  ali model follow..  13  19...............................................................................................................PAPVGLLAELTHRCPLRCPYCSNPLELDRRSAELDTQTWLRVLTEAAG--GVLHVHLSGGEPTARPD--IVEITAKCAELG---YSNLITSGVG-----GALAKLDALYDVGLDHVQLSVQGVDAANPQKMQFAARVTELGLPLTLNSVIHR---GNIHEVPGFIDLAVKLGAKRLEVAHTQYYGWAYVNRAALMPDKSQVDESIRIVE................................................................................................ 225
6 -16.2001tv7_A mol:protein length:340 Molybdenum cofactor biosynthesis protein A  ali model follow..  16  11...............................................................................................................RPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARAELGVKKIRITGGEPLMRRD--LDVLIAKLNQIDGIEDIGLTTNGLLL--KKHGQKLYDAGLRRINVSLDASINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDD--QIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVVAKYYRHKDNGVQFGLIT.......................................................................... 254
7 -15.9005wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  11  25...................................AVHVVDDISFDILDYYKNFTAGEIKNKLAHKYNADEIDEALREIESLEAEGLLFSEDPYKEYVSSMDRKSV--------KALCLHISHDCNLRCKYCFASTNFGGQRNMMSLEVGKKAIDFLISESGNRKIDFFGGEPM-MNFDVVKGIIEYARQKEKEHNKNFRFTLTT---LLLNDENIKYINENM-QNIVLSIDGRKEVNDDILPKFKYVAESQDNYYVRGTFTRENMDFSNDVLHLADE.......................................................................................................................................... 276
8 -15.6004jc0_A mol:protein length:438 Ribosomal protein S12 methylthiotransferase RimO  ali model follow..  11  54........................RESIDEIFSFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEV------DQWIGVADPEEIANAIENGTDLVPDQPETVYRYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKE--GKKEIILVAQDTTSYGIDALPDLLRRLNSLNGEFWIRV----MYLHPDHLTEEIISAMLELDKVYFDVPVQHGSD-SEELKKMLSSIRERFPDAVLRTSIIVGFGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKK.............................................................................. 373
9 -15.1005l7j_A mol:protein length:459 ELP3 family  ali model follow..  11  15....................................................................................................................AVMTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRAKSCEYQAYKQVAELIIMGGTFLSADITYQYGFIKDCYDQHRCVGLCIETR-----PDICGKAEIQRMIDFGTTRVELGVQMLDD-VSDVAEATCLLREYGLKVHYH--WMPGLGSSPEKDLALSRMVFEDGLKLYPTMVVEGTILEQWWKYPNGTMTGLIADIKALVP................................................................................................ 270
10 -15.1005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  11  20................................................................................................PVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSCSWCDSAFTWDGSAKKDIRWTAEEIFAELKDGDAFSHVTISGGNPALLKQ--LDAFIELLKENNI--RAALETQ---TVYQDWFTLIDDLT-----ISPKPPSSKMVTNFQKLDHILTSLQENDRQHAVSLKVVIFNDEDLEFAKTV---HKRYPGIPFYLQVGNDDVHTTDDQSLIAHLLGKYEALVDKV................................................................................................. 231
11 -15.0005l7l_A mol:protein length:446 ELP3 family, ELP3 family  ali model follow..  11  15....................................................................................................................AVMTKPLPCPGKCIYCPTFAATPQSYTPESPAVLRAKSCEYQAYKQVAELIIMGGTFLSADITYQYGFIKDCYDQHRCVGLCIETR-----PDICGKAEIQRMIDFGTTRVELGVQMLDD-VSDVAEATCLLREYGLKVHYH--WMPGLGSSPEKDLALSRMVFEDGLKLYPTMVVEGTILEQWWKYPNGTMTGLIADIKALVP................................................................................................ 270
12 -14.6003c8f_A mol:protein length:245 Pyruvate formate-lyase 1-activating enzyme  ali model follow..  15  14.............................................................................................................TVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVT--VEDLMKEVVTYRHFMNVTASGGEAILQAE-----FVRDW--FRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVMLIHQNLVGVSNHRTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGLLPYH................................................................................................................................ 202
13 -14.5004k36_A mol:protein length:392 Anaerobic sulfatase-maturating enzyme  ali model follow..  13  5..................................................................................................................SLLIKPASSGCNLKCTYCFSDNRNVKSYGIMRDEVLESMVKRVLNEAN--SFAFQGGEPTLAGLEFFEKLMELQRKHNYKNLNSLQTNGTL-----IDESWAKFLSENK-FLVGLSMDGPKEIHNKVERAAELFKKYKVEFNILCVV---TSNTARHVNKVYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNL................................................................................................. 221
14 -14.3003rf9_A mol:protein length:404 Ribosomal RNA large subunit methyltransferase N  ali model follow..  14  46...................MKWMYHYCCDNFDEMTDI-----------KVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAI------------------AVGDQRVETVYIPEDDRATLCVSSQCALECKFCSRNLRVSEIIGQVWRAAKIVGAAKVTGQRPITNVVMMGGEPLL----NLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDALAISLHAPNDETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKKINLIPW-----NPFPGAPYGRSSNSRIDRFSKVLMSYFTTIVRKTRGDDIDAACGQL.............................................................................. 358
15 -14.1002yx0_A mol:protein length:342 radical sam enzyme  ali model follow..  12  73....................................................................................................................QMTPVLAWCTHNCIFCWRPMENFLGTELPQPWDDPAFIKKFEEAWNPTHAAISSGEPMLYPY--MGDLVEEFHKRG---TTFIVTNGTIPERLEPTQLYVSITAPDIETYNSVNIPMIPDGWERILRFLELMRDLPTRTVVRLTLVKGENM--HSPEKYAKLILKARPMFVEAKAYMFVGYSRN-MPSHQDIREFAEALVKHLPGYHI............................................................................................ 311
16 -13.9006djt_A mol:protein length:331 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase  ali model follow..  14  61.............................................................................................................IETHRCIQCTPSVIWCQQNCIFCWRVLPRDIGIDISQIKELAMHKRIIMGYAGVLDAISLSGEPTLYPY--LDELIKIFHKNG---TTFVVS----------NGILTDVIEKIEPTQLYISLDAYDLDSESILNTLDILKEKKRTCI-RTTLIRGYNDDILKFVELYERAHFIELKSYMHVGYSQKRLKKEDMLQHDEILKLAKMLDENSS................................................................................................ 299
17 -13.0004r33_A mol:protein length:420 NosL  ali model follow..  11  11......................RGSHMTQNSQAMTSHAMTGDFVLPELEDVRAE---AATVDTRAVLALAEGEEPA------ESRAAVALALWEDRSIGTAELQAAAEARCGARRPRLLYTTNYCDSECKMCMRKGNHRLDRKFSGRKEITEQLEILYHHEGVRGVGFLTGEYEDKHTRSAFRIGWAIRTALDLGFERVYFNIGSMEQDEI-DVLGEWIGRYRRFMGKTSVGVPKADFDRRVVSFDRWLDAGYRYVNPGVLV-GLHDDVSLVAHGDHLRSRGATADLSVPRMRPAMKSRD-RVGDDDYLRLMSVVA-----FTCPEQRLVLTTR.................................................................................. 337
18 -12.5004m7s_A mol:protein length:269 BtrN  ali model follow..  10  1.............................................................................................................MDKLFSMIEVEVNSQCNRTCWYCPNSVSKRKETGEMDPALYKTLMEQLSSLDFAGRISFHFGEPLL--CKNLDLFVGMTTEYIPRARPIIYTNGDFLTEKRLQTLTELGIQK---FIVTQHAGAKHKFRG................................................................................................................................................................................. 126
19 -12.5004rtb_A mol:protein length:477 HydG protein  ali model follow..  14  22...........................................LVQRTYEIVNKVNRNPKEEISQIIQKLQKGERL------SLIEAGIAFANDTEELDQILFWQARKVKEEIYGKRILYLSNICINNCSYCFRRENKELSRVRLSLEEAVDEAKAIREMGHTRILLVMGEEPEDKTLSYLEEIIPAIYS--EVDIRRINVNIAPLTLKGYER-QLFQESYNPEVYREVHLDGPKTNFLWRLNAVERAIEAGIDDIGIGALF-GLGDPLFELLGVIAHADYLKVSVPRLKPALNSVFSNDYKISDHKFKKIVALLR-----IMLPYTGIILSTREPQ............................................................................... 324
20 -12.5005fep_A mol:protein length:358 [FeFe] hydrogenase maturase subunit HydE  ali model follow..  10  2................WSHPQFEKASTGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVH--------------------------------------RAIIEFSNVCRKNCLYCLRRDNKNLKRYRMTPEEIVERARLAVQF-GAKTIVLQSGEDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYY-EKWKEAGADRYLLRHETANPVLHRRPDTSFENRLNCLLTLKELGYET-GAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVA--LTRILLPDSNIPATTAMGTI.............................................................................. 284
21 -12.3004m7t_A mol:protein length:270 BtrN  ali model follow..  10  14............................................................................................................HMDKLFSMIEVEVNSQCNRTCWYCPNSVSKRKETGEMDPALYKTLMEQLSSLDFAGRISFHFGEPLL--CKNLDLFVGMTTEYIPRARPIIYTNGDFLTEKRLQTLTELGIQK---FIVTQHAGAKHKFRG................................................................................................................................................................................. 140
22 -12.3004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  9  1...............................................................................MGSSSSGLVPRGSHMTYAVKE--FYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRAQENGGKFKDADALVATIAGLWPAGEAHRFVVCTGGEPMLQLDQPLVDALHA--------GIAIETNGSLPVLESID-------------WICVSPKADAPLVVTPQDNQRLADYAKLDFEYFLVQPMDGPSRDLNTKLAIDWCKR....................................................................................................................................... 207
23 -12.1004fhc_A mol:protein length:368 Spore photoproduct lyase  ali model follow..  13  1..............................MKPMSDYDIPTTENLYFQGAMGKPFVPK-------YFEPEALSYPLGKELYEKFTQMGIKIRETTSHNQVRGIPGETELARYRNAKSTLVLATGCMGHCHYCYLQTTLGSKPYIRVYVNLDDIFAYINERAPEITRFEAASDIVGIDHHSLKKAIEFIGATDYG-RLRFVTKYEHV------DHLLDARHNGKTRFVINHFEPGTSSFDGRLAAARKVAGAGYKLG--APIYRHEGGYFELFQELARQLEGMDLSDLTF............................................................................................................................... 288
24 -12.0004u0o_B mol:protein length:296 Lipoyl synthase 2  ali model follow..  13  54...................................................................................................................ATFLLLGPTCTRACAFCQVEK--GHAPAAVDPEEPTKIAAAVATL-GLRYVVLTSVARDDLPDQGAGQFVATMAAIRQRPGTEIEVLSPDFRMDRGRLSQRDCIAQIVAAQPAC-YNHNLETVRRLLRVLATVKELNPDIPTKSGLMLGLGETEAEIIETLKDLRRVGCDTLGQYLPPSLSHLPVVKYWTPEEFNTLGNIARELG-HVRSGPLVRSSYHAAE............................................................................... 288
25 -12.0003t7v_A mol:protein length:350 methylornithine synthase PylB  ali model follow..  10  7...........................................................LDEFDSLGDKVIEGYQL------TDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVIYFSTYCKNQCSFCYYNCRNEINRYRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYY--YEDPNRFVELVQIVKEELGLPIMISPGLMDNAKAREKGANFLALYQETYDTELYRRVGQSFDGRVNARRFAKQQGYCV--EDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSELKIIS--VLRLMFPKRLIPASLD.................................................................................. 279
26 -11.9004jy8_A mol:protein length:358 FEFE-HYDROGENASE MATURASE  ali model follow..  10  2................WSHPQFEKASTGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVH--------------------------------------RAIIEFSNVCRKNCLYCLRRDNKNLKRYRMTPEEIVERARLAVQF-GAKTIVLQSGEDPYYMPDVISDIVKEIKKMGVAVTLSLGEWPREYY-EKWKEAGADRYLLRHETANPVLHRRPDTSFENRLNCLLTLKELGYET-GAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVA--LTRILLPDSNIPATTAMGTI.............................................................................. 284
27 -11.4005exi_A mol:protein length:331 Lipoyl synthase  ali model follow..  11  86...................................................................................................................ATFLIGGDQCTRRCDFCQIDTGKPAELDRDEPRRVADSVRTMGLRYAT--TGVARDDLPDGGAWLYAATVRAIKELNPSTGVELLIPD------NGEPTRLAEVFES-----PEVLAHNVETVPRSLGVLTAARDAGLVTKSNLIL--GLGETSDEVRTALGDLRDAGCDIVTITQYLRPSARH--WVKPEEFVQFARFAEGLGFAGVLAGPLVRSSYRAGRLYE............................................................................ 314
28 -11.3001olt_A mol:protein length:457 OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE  ali model follow..  11  11................................................................ALIQKYNYSGP-RYTSYPTALEFSEDFGEQAQAVARYPERPLSLYVH----------IPFCHKLCYFCGCNKIVTRQQHKADQQEIVHRAPLFAGRH-VSQLHWGGGTPTYLNKAQISRLMKLLRE--NFQFNADAEISIEVDPREIELDVLDHLRAENRLSMGVQDFNKEVQREFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDALDILQETIAFLDHFARPDDELAVAQREGVL.............................................................................. 306
29 -11.2003can_A mol:protein length:182 Pyruvate-formate lyase-activating enzyme  ali model follow..  17  7.....................................................................................................................................................................VTFCGGEPL-LHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLIDLKSMDSTVHQTFCDVPNELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPLLPYH................................................................................................................................ 135
30 -11.1004wcx_A mol:protein length:480 Biotin and thiamin synthesis associated  ali model follow..  15  18...........................................NDEKIRQDLEKAKKATSKDALEIIEKAKNLKGI------TPEEAAVLLNVEDEDLLNEMFKVARYIKEEIYGNRILYVSNYCVNNCRYCGYRHSNEQQRKKLTMEEVRREVEILEEMGHKRLAVEAGEDPVNCPIDYIVDVIKTIYD--TKLKNGSIRRVNVNIAATTVENYKKLKKVGRPTYEYMHPQGPKHDYDYHLTAMDRAMEAGIDDVGLGVLY-GLYETVAMLYHANHLEEKFGVGPHTI............................................................................................................................... 275
31 -10.4001r30_A mol:protein length:369 Biotin synthase  ali model follow..  10  58................................................................................................................QVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAAGSTRFCMGAANPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV---SGGIVGLGETVKQLANLPTPPESVPINMLV-----KVKGTPLADNDDVDAFDFIRTIA--VARIMMPTSYVRLSAGREQM.............................................................................. 285
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.