Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: 2ahm_E mol:protein length:203 Replicase polyprotein 1ab, heavy chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200
# Score Template Links and tools%idFirst GPLGSAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQLast
1 -107.0002ahm_E mol:protein length:203 Replicase polyprotein 1ab, heavy chain  ali model  100  1GPLGSAIASEFSSLPSYAAYATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQ 203
2 -99.4003ub0_A mol:protein length:199 Non-structural protein 6, nsp6,  ali model follow..  44  3...LGSVASAYAALPSWIAYEKARADLEEAKKNDVSPQLLKQLTKACNIAKSEFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIEQARNGVLPLSIIPAASATRLIVVTPNLEVLSKVRQENNVHYAGAIWSIVEVKDANGAQVHLKEVTAANELNITWPLSITCERT---TKLQ 199
3 -65.9005f22_B mol:protein length:134 Non-structural protein  ali model follow..  97  3.......................................................................LGSMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVVPDYGTYKNTCDGNTFTYASALWEIQQVVDADSKIVQLSEINMDNSPNLAWPLIVTALRANSAVKLQ 134
4 -7.7705j9q_D mol:protein length:120 Chromatin modification-related protein YNG2  ali model follow..  9  4SLVLEQTIQDVSNLPSEFRYLLEEIGSNDLKLIEEKKKYEQKESQIHKFIRQ--QGSIPKHPQEDGLDKEIKESLLKCQSLQREKCVLANTALFLIARHLNKLEKN................................................................................................. 107
5 -7.3405mil_A mol:protein length:202 DUTPase family protein  ali model follow..  12  2GSSSSGLVPRGSHMASMTGGQQMGRGSMTNTLTIDQLQELLQIQKEFD-TLNLRDSKIAYVVEFFEWFNTLETFKNWKKKPGKPLDVQLDELADMLAFGLS...................................................................................................... 105
6 -7.3203j6b_2 mol:protein length:147 54S ribosomal protein L28, mitochondrial  ali model follow..  14  53........................................RKQPKLLKLAREDLIKHQTIEKC----------SIYQQQQRERRNLQLELQYKSIERSMLQELSPRLFEAANASEKGKRFPMEM-------KVPTDFPPNTLWH........................................................... 142
7 -6.7405me8_A mol:protein length:107 Inhibitor of growth protein 5  ali model follow..  9  6AMYLEHYLDSIENLPCELQRNFQLMRELDQRTEDKKAEIDILAAEYISTVKT------LSPDQRVERLQKIQNAYSKCKEYSDDKVQLAMQTYEMVDKHIRRLDADLA............................................................................................... 107
8 -6.6904afl_A mol:protein length:104 INHIBITOR OF GROWTH PROTEIN 4  ali model follow..  13  3GMYLEHYLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARS------LSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHIRRLDTDLA............................................................................................... 104
9 -6.0502hvq_A mol:protein length:335 Hypothetical 37.6 kDa protein in Gp24-hoc intergenic region  ali model follow..  9  206GYVLKPCYPSWLRNGNRVAIKCKNSKFSEKKKSDKPIKAKVELSEADNKLVGILACLNRVNNVISKIGEIGPKDFGKQDILEETSREGITLTQADNPSLIKKELVKMVQDVLRPAWIELVS.................................................................................. 335
10 -6.0002idx_A mol:protein length:196 Cob(I)yrinic acid a,c-diamide adenosyltransferase  ali model follow..  13  58.EELQKIQCTLQDVGSALATPCSSAREAHLKYTTFKAGPILELEQWIDKYTSQLPPLTAFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKE................................................................................................ 177
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.