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Query: 2b5a_A mol:protein length:77 C.BclI, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MINEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEENLast
1 -49.4002b5a_A mol:protein length:77 C.BclI  ali model  100  1MINEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEEN 77
2 -44.2001y7y_A mol:protein length:74 C.AhdI  ali model follow..  49  6..DHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELFC...... 74
3 -43.6004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  35  5...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
4 -43.5004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  36  5...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKE. 77
5 -43.3004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  35  5...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
6 -43.2004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  35  5...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
7 -43.0004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  35  5...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKE. 77
8 -42.3003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  36  16...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKE. 88
9 -41.4003fya_A mol:protein length:99 Regulatory protein  ali model follow..  35  16...ESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKE. 88
10 -40.9003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  38  12LPDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERL 88
11 -36.5002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  22  2...SSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL....... 70
12 -35.4003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  33  3........SMIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQNPSIQFLEKVSAVLDVSVHTLLDEKHETE 72
13 -35.2003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  21  10.....ARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAM. 80
14 -34.2003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  26  54.IADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERR. 128
15 -34.0004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  25  2.FQKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDA...... 71
16 -33.9003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  27  21..PEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGS. 94
17 -33.4005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  32  1MAMTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGES. 76
18 -32.1003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  22  3.....TDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRKRPTITTIRKVCGTLGISVHDFFDFPPYNE 75
19 -31.8002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  22  9........RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMDILLKD. 76
20 -31.3003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  18  11........RALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQV 79
21 -30.7002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  19  9..EELERGQRLGELLRSAR--GDMSMVTVAFDAGISVETLRKIETGRATPAFFTIAAVARVLDLSLDDVAAVVTFG. 81
22 -30.3002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  25  1MMSFQKIYTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPE 79
23 -30.1001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  33  1.........MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQNPSIQFLEKVSAVLDVSVHTLLDEKHETE 69
24 -30.0004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  21  34IMASPLNQQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKG-EDVYISTVFKILDGLGIDIVSAQTSDTETN 109
25 -29.7003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  23  13........VYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEG............. 68
26 -29.4002xiu_A mol:protein length:66 CYLR2  ali model follow..  34  1.........MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE.. 66
27 -29.3001utx_A mol:protein length:66 CYLR2  ali model follow..  34  1.........MIINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE.. 66
28 -29.1005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  25  7.FQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPE 82
29 -28.6001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  20  1MSNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGNDL 78
30 -28.3001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  20  11..EQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIARE. 84
31 -28.1001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  24  3.LTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ.. 76
32 -28.0003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  18  5..EQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPSIARE. 78
33 -27.6005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  15  10ISSANYARQIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPL 86
34 -27.5006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  233ALDFTNHENASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKKLPTFDELKIIAKALNVNSRDLMPNDLTES 309
35 -27.4002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  12  3..........LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVN. 68
36 -27.2002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  24  3..AELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESE 77
37 -27.1001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  23  11...QLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFSPSIARE. 83
38 -26.6003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  22  6.......ERKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR.. 73
39 -26.5001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  17  3.......TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQT 72
40 -26.5003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  27  1.........MLIRRLKDARLRAGISQEKLGVLAGIDEARMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDD.. 70
41 -26.0004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  21  22.VTAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE... 94
42 -26.0001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  18  5.SSGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 80
43 -25.8003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  16  8.......QQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK.. 75
44 -25.8006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  15  236........GDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTE 304
45 -25.7001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  22  2..........ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENG-KTKRPRFLPELASALGVSVDWLLNGTSDSN 67
46 -25.6004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  22  1.........MLGTRLKAARIRAGYSQKQLGMLVGMDSARMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDE.. 70
47 -25.4004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  12  11.......RETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRL...... 74
48 -25.1003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  30  15.......QSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYEN 84
49 -24.7003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  15  4.......MRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEAEPDPAAATALAEALSVEPSQLAADAHRNL 74
50 -24.6001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  23  1.......MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAG-VTKRPRFLFEIAMALNCDPVWLQYGTKRGK 69
51 -24.6002l49_A mol:protein length:99 C protein  ali model follow..  16  1......MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQIA 71
52 -24.5003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  12  2..NAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDK 76
53 -24.4002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  13  1.MVKDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNI 76
54 -24.1001sq8_A mol:protein length:64 dh434  ali model follow..  23  3..........MGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENG-KAKRPRFLPELARALGVAVDWLLN...... 62
55 -23.9001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  17  11.......RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILL...... 74
56 -23.8002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  22  2..........ISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENG-KTKRPRFLPELASALGVSVDWLL....... 60
57 -23.6005a7l_A mol:protein length:80 CI  ali model follow..  14  1......MQTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM....... 73
58 -23.6005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  20  1....MNLKDSIGLRIKTERERQQMSREVLCLGAELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITI 74
59 -23.3002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  23  1.........MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLN 68
60 -22.9002qfc_A mol:protein length:293 PlcR protein  ali model follow..  28  3.......AEKLGSEIKKIRVLRGLTQKQLSE---CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSD 71
61 -22.8005fd4_A mol:protein length:324 ComR  ali model follow..  15  22.......DKEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLP 92
62 -22.7003zhi_A mol:protein length:83 CI  ali model follow..  15  3.......KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLM....... 74
63 -22.6003zhm_A mol:protein length:79 CI  ali model follow..  15  1.......KTDTSNRLKQIMAERNLKQVDILNLSKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM....... 72
64 -22.4005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  16  10........QNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPPIYLLLHFYIEGQITDRQLADLRGK.. 77
65 -22.1004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  30  1......MDKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFVSTHSKTH 70
66 -21.8002jvl_A mol:protein length:107 TrMBF1  ali model follow..  17  26.IKPKTVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANI...... 97
67 -21.8002aw6_A mol:protein length:317 PrgX  ali model follow..  21  1.......MFKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRAGMNT 69
68 -21.1005v5t_A mol:protein length:306 Conserved domain protein  ali model follow..  16  1.QKEYMEYRPLGEEIERIRKGKNIPLRVFDE-NGVSSRSYQRFVQGNSELRISDLAIIVEILSISPMEMTEKLTPMS 75
69 -20.8004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  24  1.......MGSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFS 69
70 -20.7005u55_A mol:protein length:190 (S)-2-hydroxypropylphosphonic acid epoxidase  ali model follow..  15  2.............DVRTLAV-GKAHLEALLATRKMTLEHLQDVRHDATQDGLEHLQNVAQYLAIPLSEFFVGQTQSD 67
71 -20.7004yba_A mol:protein length:99 Regulatory protein C  ali model follow..  26  1.MIQNHIKNMTPEICKASRALVNLTQKELALMAGIATPTIADFERGARKPHGNNLRSIIIAFENKGLDFVEE..... 71
72 -19.1002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  16  5..KIMKMRSQLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKDLFSLESLIDMITSIGLKVE.......... 70
73 -19.0005y69_A mol:protein length:151 chain A  ali model follow..  2........SMTIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKPNKYTVSILRSLSMISGLSVSDVLFELEDIE 71
74 -18.8003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  20  10..EQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIARE. 83
75 -17.9002o38_A mol:protein length:120 Hypothetical protein  ali model follow..  18  33..EERQTKLRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKEGFSVERLMTLLNALDQDVEIVIRKKPRSR 108

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.