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Query: 2bkm_A mol:protein length:128 TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROTHERMOPHILUS, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EQWQTLYEAIGGEETVAKLVEAFYRRVAAHPDLRPIFPDDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNTPDHLDLast
1 -72.3002bkm_A mol:protein length:128 TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROTHERMOPHILUS  ali model  100  1EQWQTLYEAIGGEETVAKLVEAFYRRVAAHPDLRPIFPDDLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNTPDHLD 128
2 -67.5005d1v_A mol:protein length:127 Globin  ali model follow..  42  2.SEPTIYEQIGGEATFRRIVDIFYARVEADPRLRHLFPADLEPGKEHQRLFLMQYFGGPRTYSERRGHPRLRMRHAPFPIGPRERDAWLEHMLAALNEAGVPEPARSVMENYFRHAAQAMMNRLGED. 127
3 -65.7005v3t_A mol:protein length:132 Globin  ali model follow..  68  3KQPMTPFEAIGGEQCIEILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPNETG 130
4 -64.8002bmm_A mol:protein length:123 THERMOSTABLE HEMOGLOBIN FROM THERMOBIFIDA FUSCA  ali model follow..  44  2....TFYEAVGGEETFTRLARRFYEGVAADPVLRPMYPEDLGPAEERLRLFLMQYWGGPRTYSERRGHPRLRMRHFPYRIGAEERDRWLTHMRAAVDDLALPAHLEQQLWEYLVYAAYAMVNVPE... 123
5 -63.8004uur_A mol:protein length:145 PUTATIVE HEMOGLOBIN-LIKE OXYGEN-BINDING PROTEIN  ali model follow..  32  19TPEKTPYEILGGEAGALAIANRFYDIMATDEYAKPLYDMPLDRIRQVFFEFLSGWLGGPDLFVAKHGHPMLRKRHMPFTIDQDLRDQWMYCMNKTLDLEVDNPLLREGLKQSFGQLASHMINQ..... 144
6 -63.8002xyk_A mol:protein length:133 2-ON-2 HEMOGLOBIN  ali model follow..  40  3SETVTLYEAIGGDATVRALTRRFYELMDTLPEAARCRAADLSGSEAKFYDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERLAFHMQNQEADN. 132
7 -63.4001ux8_A mol:protein length:132 YJBI PROTEIN  ali model follow..  65  3QSFNAPYEAIGE-ELLSQLVDTFYERVASHPLLKPIFPSDLTETARKQKQFLTQYLGGPPLYTEEHGHPMLRARHLPFPITNERADAWLSCMKDAMDHVGLEGEIREFLFGRLELTARHMVNQTEAED 129
8 -60.4001ngk_A mol:protein length:128 Hemoglobin-like protein HbO  ali model follow..  38  2..PKSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASITLDDEHRRELLDYLEMAAHSLVNSP.... 127
9 -59.6004uzv_A mol:protein length:164 HEMOGLOBIN  ali model follow..  41  31DDQMTFYEAVGGEETFTRLARRFFEGVAADPVLRPMFPEDLGPAEERLRLFLMQYWGGPETYSERRGHPRLRMRHEPYRIGAEERDRFLTHMRAAVDDLALPAHLEQQLWEYLVYAAYAMVNVPEDAQ 159
10 -58.3004xdi_A mol:protein length:135 Chlamydomonas reinhardtii THB1  ali model follow..  22  5APADSLYSRMGGEAAVEKAVDVFYERIVADPQLAPFFANDMKKQRRKQVAFMTYVFGGSGAYEGRDLGASHRRLIREQGMNHHHFDLVAAHLDSTLQELGVAQELKAEAMAIVASARPLIFGTGEAG. 132
11 -58.2002gl3_A mol:protein length:136 Hemoglobin-like protein HbN  ali model follow..  21  10REPISIYDKIGGHEAIEVVVEDFFVRVLADDQLSAFFSGNMSRLKGKVVEFFAAALGGPEPYTGA----PMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTT. 133
12 -57.8001idr_A mol:protein length:136 HEMOGLOBIN HBN  ali model follow..  23  10REPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGNMSRLKGKQVEFFAAALGGPEPYTGA----PMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTT. 133
13 -57.2003aq5_A mol:protein length:121 Group 1 truncated hemoglobin  ali model follow..  25  2NKPQTIYEKLGGENAMKAAVPLFYKKVLADERVKHFFKNDMDHQTKQQTDFLTMLLGGPNHYKGK----NMTEAHKGMNLQNLHFDAIIENLAATLKELGVTDAVINEAAKVIEHTRKDMLGK..... 121
14 -56.7006bme_A mol:protein length:128 Truncated hemoglobin 4  ali model follow..  19  1...STLHAKLGGAAAVAATVDVFYKKLMNDPDLEPFFRGDMVTLIAKQNRFLAYAFGATTHYHGKDIVMGHAHLIINRGLNLTHFDKVAGHFVDSLKEMGVGQELIDEAAGVLIGVRPLFDPERYKGK 126
15 -55.7002ksc_A mol:protein length:123 Cyanoglobin  ali model follow..  21  1...ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHDVLNR..... 123
16 -55.6001dlw_A mol:protein length:116 HEMOGLOBIN  ali model follow..  22  1....SLFEQLGGQAAVQAVTAQFYANIQADATVATFFNGDMPNQTNKTAAFLCAALGGPNAWTGR----NLKEVHANMGVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRGDVVT...... 115
17 -55.2001dly_A mol:protein length:164 HEMOGLOBIN  ali model follow..  20  40KCPSSLFAKLGGREAVEAAVDKFYNKIVADPTVSTYFSNDMKVQRSKQFAFLAYALGGASEWKGK--DMRTAHKDLVPHLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTRTEVLNMPQQ.. 164
18 -55.0001s69_A mol:protein length:124 Cyanoglobin  ali model follow..  23  1..MSTLYEKLGGTTAVDLAVDKFYERVLQDDRIKHFFADDMAKQRAHQKAFLTYAFGGTDKYDGRYMREAHKELVENHGLNGEHFDAVAEDLLATLKEMGVPEDLIAEVAAVAGAHKRDVLNQ..... 124
19 -52.5004nk1_A mol:protein length:193 Hemoglobin-like protein  ali model follow..  26  48KFPSKKVYLAAGEELLRKLVEVHHENLMKSKIHYLFPHEQLRSLVKRSADFVVEMCGGPPYYTLTRGEPKMRARHFSVTIDEKAREIWLACYKHALKDVHFPLSVLEEFWQWIESFSIRMINRRTTLE 177
20 -50.6004c0n_A mol:protein length:175 2-ON-2 HEMOGLOBIN  ali model follow..  27  23.DESNLFDKLGL-QTFINLSTNFYTRVYDDEEEWFQSNSNKEDAIQNQYEFFVQRMGGPPLYSQRKGHPALIGRHRPFPVTHQAAERWLEHMQNALDDVDIDQDSKIKMMKFFRHTAFFLVAGNELKN 152
21 -43.0002ig3_A mol:protein length:127 Group III truncated haemoglobin  ali model follow..  22  1.....MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNEWKEHKAKIGNFWAGMLLGEGDYNGQ----PLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNE-EMKNVILQRAQMIASHFQNM..... 120
22 -14.9002w31_A mol:protein length:162 GLOBIN  ali model follow..  12  29............ETNKERLADQFYDYLLGIPETAEFLKEDLQKLKQTHQDWFVSLFAGSYDNRYIHNLQKIGHAHVRVGLNAHAMNVVRQFTLSIIQDNFPDPEERRQRREAVEKI............ 138
23 -14.5001or4_A mol:protein length:178 Heme-based aerotactic transducer hemAT  ali model follow..  16  59............QENIVNIVDAFYKNLDHESSLMDIINDHVDRLKQTLKRHIQEMFAGVIDDEFIEKRNRIASIHLRIGLLPKAFQELLLSMIDIYEASITNQQELLKAIKATTKI............ 168
24 -14.3004zvb_A mol:protein length:163 Diguanylate cyclase DosC  ali model follow..  10  32............VAHAHYLSIEFYRIVRIDPHAEEFLSNEERQLKSAMERWIINVLSAQVDDVERLIQHTVAEVHARIGIPVEIVEMGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINSID...... 145
25 -14.3001tu9_A mol:protein length:134 hypothetical protein PA3967  ali model follow..  14  4NAADRVMQSYGRCCASTGFFDDFYRHFASSPQIRAKFATDMTAQKHLLRAGIMNLVMYARGMSDSK--LGASHSRAALDIRPELYDLWLDALLMAVAEHDCDAETRDAWRDVMGRGIAVIKSYYGS.. 134
26 -14.1004zva_A mol:protein length:165 Diguanylate cyclase DosC  ali model follow..  13  27............VAHAHYLSIEFYRIVRIDPHAEEFLSNEERQLKSAMERWIINVLSAQVDDVERLIQHTVAEVHARIGIPVEGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINS............ 138
27 -13.7003wfw_A mol:protein length:138 Hemoglobin-like flavoprotein fused to Roadblock/LC7 domain  ali model follow..  15  17............IDKMDEAGLLFYRRLDVEPKVRPLFKIDIEKQGRKLMDVLNWIVLNLQDIDA----RELARRHVKYGVKAEHYPVVGHTLIWTLRKMEWTKQLEQLWTQAYEALAQVMIEE..... 132
28 -13.4003s1i_A mol:protein length:139 Hemoglobin-like flavoprotein  ali model follow..  15  22................NEIGLLFYANLKEEPTVSVLFQNPISSQSRKLMQVLGILVQGIDNLEG----QDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYGFTEEAKAAWTKVYGIAAQVMTAE..... 133
29 -13.1005ohe_A mol:protein length:161 Globin-coupled histidine kinase  ali model follow..  17  34............APHFPRLAEEFYDRILGHEGARTALVGGVGHLKVTMIAWLDELLGGPWDEAYWDRRYRIGRVHVRIGLPQHYMFGAMNVHRTGLERFHGDPPELERVRNALGKV............ 145
30 -12.9002wy4_A mol:protein length:140 SINGLE DOMAIN HAEMOGLOBIN  ali model follow..  11  17............QKNGEDLTNEFYKIMNDYPEVKPMFNMEKQISGEQPKALAMAILMAAKNIENLEN-DKVAITHVNLGVKEEHYPIVGACLLKAIKNLNPDEATLKAWEVAYGKIAKFYIDIEKK.. 136
31 -12.9004uiq_A mol:protein length:177 GLOBIN-COUPLED SENSOR WITH DIGUANYLATE CYCLASE ACTIVITY  ali model follow..  13  32............TANKAALADYFYESMLADPNAAFFLSDQKTKLHASMQDWLESVYAAAEYERTVAFQRKVGEVHARIDIPVHLVTRGASALIRRIRDASLSAAQAAATCRYVADV............ 145
32 -12.8004uii_A mol:protein length:217 GGDEF DOMAIN PROTEIN  ali model follow..  10  74............TTHQSELPGYFYEQMLQDEQAMLFLTHEKSRLHGTLRQWIVSVFSMSQALIAQQ--KQIGEIHARIKIPIHGARHLRERLFVLLRQRPLDPEHKLFGQRLISET............ 187
33 -12.2002veb_A mol:protein length:195 PROTOGLOBIN  ali model follow..  15  36AEDEEYIQKAG-EDQVEEILDTWYGFVGSHPHLLYYFEKYLAAVRKRFSRWILDTSNRSYDQAWLDYQYEIGLRHHRTKKNQTDNYPITATMKPFLARKGHTPEEVEKMYQAWFKA............ 177
34 -11.8001vhb_A mol:protein length:146 HEMOGLOBIN  ali model follow..  14  18............KEHGVTITTTFYKNLAKHPEVRPLFDMGRQESLEQPKALAMTVLAAAQNIENLPA-KKIAVKHCQAGVAAAHYPIVGQELLGAIKEVAATDDILDAWGKAYGVIADVFIQVEADL. 140
35 -10.9001bin_A mol:protein length:143 LEGHEMOGLOBIN A  ali model follow..  12  19............KANIPQYSVVFYTSIEKAPAAKDLFSPKLTGHAEKLFALVRDSAGQLKASGTVVADAALGSVHAQKAVTDPQFVVVKEALLKTIKAAKWSDELSRAWEVAYDELAAAIKK...... 142
36 -10.2001jf3_A mol:protein length:147 monomer hemoglobin component III  ali model follow..  13  11...ASTWKDIAGADNGAGVGKECLSKFSAHPEMAAVFGPGVAELGAKVLAQIGVAVSHLGDEGK----KAVGVRHKGYGIKAEYFEPLGASLLSAMEHRKMNAAAKDAWAAAYGDISGALISGLQS.. 147
37 -9.7901jf4_A mol:protein length:147 monomer hemoglobin component IV  ali model follow..  13  11...ASTWKDIAGSDNGAGVGKECFTKFSAHHDMAAVFGPGVADLGAKVLAQIGVAVSHLGDEGK----KAVGVRHKGYGIKAEYFEPLGASLLSAMEHRKMNAAAKDAWAAAYADISGALISGLQS.. 147
38 -9.3701hbg_A mol:protein length:147 HEMOGLOBIN (CARBONMONOXY)  ali model follow..  13  11...AATWKDIAGADNGAGVGKKCLIKFSAHPQMAAVFGPGVAALGAKVLAQIGVAVSHLGDEGK----KAVGVRHKGYGIKAQYFEPLGASLLSAMEHRKMNAAAKDAWAAAYADISGALISGLQS.. 147
39 -9.3201gdi_A mol:protein length:153 LEGHEMOGLOBIN (CARBONMONOXY)  ali model follow..  13  19............NANIPKHTHRFFILVEIAPAAKDLFSPELQAHAGKVFKLVYEALEVTGVVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIKEVKWSEELNSAWTIAYDELAIVIKKEMDDA. 152
40 -9.1501cg5_B mol:protein length:141 PROTEIN (HEMOGLOBIN)  ali model follow..  10  5EDQEHYIKGVWKDVDHKQITAKALERVVVYPWTTRLFSKGVQQHADKVQRALGEAIDDLKKVEIN---QNLSGKHQEIGVDTQNFKLLGQTFMVELALHTFRPKEHAAAYKFFRLVAEALSSN..... 139
41 -9.0201gcv_B mol:protein length:136 HEMOGLOBIN  ali model follow..  5QEERDEISKTFQGTDMKTVVTQALDRMKVYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDVKTKDLSKKHADLHVDPGSFHLLTDCIIVELAYLCFTPHIQGIWDKFFEVVIDAISKQ..... 134
42 -9.0101d8u_A mol:protein length:166 NON-SYMBIOTIC HEMOGLOBIN  ali model follow..  12  30............KKDSANIALRFFLKIEVAPSASQMFSPKLKTHAMSVFVMTCEAAAQLRKAGK----KRLGATHLKYGVGDAHFEALLDTIKEEVPADMWSPAMKSAWSEAYDHLVAAIKQEMKPAE 166

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 1 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.