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Query: 2ckk_A mol:protein length:127 KIN17, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst GEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLALast
1 -67.7002ckk_A mol:protein length:127 KIN17  ali model  100  1GEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127
2 -47.0005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  20  1...........GPWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGG-MCSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD------LDEQLKILNLRFLGKLL 109
3 -28.1005oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  18  966HTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSV-TGGMCSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD------LDEQLKILNLRFLGKLL 1085
4 -16.3004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  18  1..............FQPGDRIEVLN----GEQRGSKGIVTRT-TKDIATIKLNGFTTPLEFPISTLRKIF-EPGDHVTVINGEHQGDAGLVLMVEQGQVTFMSTQTSREVT................ 91
5 -12.8005xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  14  275..............FQPGDNVEIIN----GELNHLTGTVSSVNQSTIVSVRLTINSETVEIPTSDLRKIF-NVGDHVRVIHGKHTDDTGLIVEVNGDKVEFISNQTKRTVI................ 371
6 -12.1005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  18  4.......................................................................HKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVE....................... 36
7 -12.1005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  18  4.......................................................................HKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVE....................... 36
8 -12.1001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  20  38.................................................................QRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE....................... 76
9 -12.0003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  21  4.......................................................................KKGDKVMVISGKDKGKQGTILAAFPKKDRVLVE....................... 36
10 -11.9004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  21  4.......................................................................KKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVE....................... 36
11 -11.8002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  17  9.......................................................................QPGDNVEVCEGELINLQGKILSVDGN----KITIMPKHEDLKDMLEFPAQELRKY. 59
12 -11.6004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  24  8.......................................................................KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE....................... 40
13 -11.6003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  15  6.......................................................................RRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG....................... 38
14 -11.6001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  18  17.......................................................................KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE....................... 49
15 -11.6003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  12  46..................IFVEAPNKG------VVDEAIRGIRHARGVLPGEVPFKEIEHFLEEKPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQF...................... 126
16 -11.6004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  11  56.....................................LIKGMPRVRGIVPGTIAIEEIEPLLTPKKIIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLEL...................... 123
17 -11.3005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  45.................................................................IKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVD....................... 83
18 -11.2001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  13  139..................ILIKAHMNDKLLMAIEKTPHVFRP---------VMVGGKPVPLKEEEVQNIL-EKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMIS---FGRMTPVELDFDQVEKI. 248
19 -11.1002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  20  45.................................................................IKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD....................... 83
20 -11.0003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  15  42.................................................................VRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILID....................... 80
21 -11.0005t2a_X mol:protein length:143 uL24  ali model follow..  15  42.................................................................VRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHID....................... 80
22 -10.9003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  30  64.......................................................................IPGDRVVVMSGASKGNIAVIKSFDKRTNSFILD....................... 96
23 -10.8002xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  12  236..................VFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLEEYEEKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVT---FGRETPVVLHVSEVEKI. 352
24 -10.8005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  17  36.................................................................VRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHID....................... 74
25 -10.7002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  60..................VFVEMIMNDEAYNFVRSVPYVMGFVS---------SGGQPVPVKDREMRPIL-KVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVT---FGRETPVVLHVSEVEKI. 176
26 -10.7002e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  14  21.........................................................................GQTVRISQGPYKGYIGVVKDATESTARVELH------STCQTISVDRQRLTTV. 67
27 -10.6003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  20  44.................................................................TRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVE....................... 82
28 -10.6005d6w_A mol:protein length:121 Lysine-specific demethylase 4A  ali model follow..  13  14.....................KVISKHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQPPAEGEVVQVRWTDGQVYGAKFVASH-PIQMYQVEFEDGSQLVVKRDDV......... 113
29 -10.6005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  18  21.........................................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH------NPNKTIPIPCSFLLIES 68
30 -10.6005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  15  44.................................................................VRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIE....................... 82
31 -10.5005ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  10  71..................VLVQMVMNDASWHLVRSVPRVMGFIGG--------TSDRPAPISDKEVDAIM-EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS---FGRATPVELDFSQVEKA. 183
32 -10.5005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  24  70.......................................................................KVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK....................... 102
33 -10.4002gf7_A mol:protein length:119 Jumonji domain-containing protein 2A  ali model follow..  14  12.....................KVISKHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSDNLYPEDIQFGPPAEGEVVQVRWTDGQVYGAKFVASH-PIQMYQVEFEDG-----SQLVVKRDDVYTLD 115
34 -10.4004ce4_Y mol:protein length:216 MRPL24  ali model follow..  15  57.......................................................................FCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVE....................... 89
35 -10.4002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  19  3......................................................SGSSGEFPAQELRKYF-KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELK................ 58
36 -10.4005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  24  71.......................................................................KVGDTVKVISGGEKGKIGEISKIHKHNSTVIIK....................... 103
37 -10.3002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  13  11.......................................................................EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS--IFGRATPVELDFSQVEKA. 63
38 -10.3004uc4_A mol:protein length:119 Lysine-specific demethylase 4B  ali model follow..  15  12.....................VVITKNRNGLYY--RCRVIGAASQTCYEVNFDDGSYSDNLYPESITSRPPSEGELVELRWTDGNLYKAKFISSV-TSHIYQVEFEDG-----SQLTVKRGDIFTLE 115
39 -10.3003j7y_V mol:protein length:216 uL24  ali model follow..  15  57.......................................................................FCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVG....................... 89
40 -10.2002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  13  10.......................................................................EVGESVTVMDGPFATLPATISEVNAEQQKLKVLVS--IFGRETPVELTFGQVSKI. 62
41 -10.1004ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  20  2.......................................................................EEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKI...................... 35
42 -10.0002oug_A mol:protein length:162 Transcriptional activator rfaH  ali model follow..  55..................LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAQLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA---RSMLLLNLINKEIKHSVKNTEFRKL. 162
43 -9.8803lgf_A mol:protein length:125 Tumor suppressor p53-binding protein 1  ali model follow..  10  12.....................RVVAKWSSNGYF--SGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIE----KEGQRKWYKRMAVI... 109
44 -9.7702g3r_A mol:protein length:123 Tumor suppressor p53-binding protein 1  ali model follow..  10  10.....................RVVAKWSSNGYF--SGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIE----KEGQRKWYKRMAVI... 107
45 -9.7302xdp_A mol:protein length:123 LYSINE-SPECIFIC DEMETHYLASE 4C  ali model follow..  17  12.....................TVITKHRNTRYY--SCRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVS-PPAEGEVVQVKWPDGKLYGAKYFGSN-IAHMYQVEFEDGSQIAMKREDI......... 111
46 -9.6906duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  13  8.......................................................................EPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVS---FGRATPVELDFSQVEKA. 60
47 -9.4505zji_E mol:protein length:136 Photosystem I reaction center subunit IV A  ali model follow..  38.................................GRRLVARADNEAAAAEAAEGEGAVATKPKAEKPPPIGPKRGAKVKILRRES-NGIGNVVTVDQDPNTVVVRFNKVNYAGVSTNNYALDEVSEV. 135
48 -9.3501nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  15  6.......................................................................REGDQVRVVSGPFADFTGTVTEINPERGKVKVMVT---FGRETPVELDFSQVVK.. 57
49 -9.2705zcj_C mol:protein length:180 TP53-binding protein 1  ali model follow..  17AGPSDGLDASSPGNSFVGLRV-VAKWSSNGYFY--SGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKE................... 121
50 -9.0502mam_A mol:protein length:118 AT-rich interactive domain-containing protein 4A  ali model follow..  12  13.......................VSAKYRGAFC--EAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVKGPL-RVGAIVETRTSDGSFQEAIISKLT-DASWYTVVFDDGDERTLRRTSL......... 103

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.