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Query: 2d3e_A mol:protein length:134 General control protein GCN4 and Tropomyosin 1 alpha chain, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSILast
1 -77.3002d3e_A mol:protein length:134 General control protein GCN4 and Tropomyosin 1 alpha chain  ali model  100  1MEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 134
2 -34.2002b9c_A mol:protein length:147 striated-muscle alpha tropomyosin  ali model follow..  49  65.KHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKNYHLENEVARLKKLVGE.................................................. 147
3 -24.3001c1g_A mol:protein length:284 TROPOMYOSIN  ali model follow..  82  151AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
4 -21.6002efr_A mol:protein length:155 General control protein GCN4 and Tropomyosin 1 alpha chain  ali model follow..  90  5LEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138
5 -19.3002tma_A mol:protein length:284 TROPOMYOSIN  ali model follow..  82  151AKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
6 -19.1002z5h_A mol:protein length:52 General control protein GCN4 and Tropomyosin alpha-1 chain  ali model follow..  83  11............................................................................................ENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMTSI 52
7 -17.7006gaj_A mol:protein length:133 Outer capsid protein sigma-1  ali model follow..  13  1...MAEEIKKQVQVNVDDIRAANIKLDGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISSLGDRINAVEPRVDSLDTVTSNLTGRTSTLEADVGSLRTELAALTTRVTTEVTRLDGL 131
8 -17.3001mv4_A mol:protein length:37 Tropomyosin 1 alpha chain  ali model follow..  97  4....................................................................................................KSIDDLEDELYAQKLKYKAISEELDHALKDMTSI 37
9 -17.0006gao_A mol:protein length:240 Outer capsid protein sigma-1  ali model follow..  10  14NVDDIRAANIKLDGLGRQIADISNSISTIESRLGEMDNRLVGISSQVTQLSNSVSQNTQSISSLGDRINAVEPRVDSLDTVTSNLTGRTSTLEADVGSLRTELAALTTRVTTEVTRLDGLINSGQNSIGELST. 146
10 -16.8004lin_A mol:protein length:300 Tail needle protein gp26  ali model follow..  16  70AQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 203
11 -16.5003c9i_A mol:protein length:242 Tail needle protein gp26  ali model follow..  10  13.PSLNNPVVIQATRLDASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145
12 -15.6004zkp_A mol:protein length:237 Tail needle protein gp26  ali model follow..  10  8.PSLNNPVVIQATRLDASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 140
13 -15.3006gap_A mol:protein length:261 Outer capsid protein sigma-1  ali model follow..  11  28LEKTSQIHSDTILRITQGLDDANKRIIALEQSRDDLVASVSDAQLAISRLESSIGALQTVVNGLDSSVTQLGARVGQLETGLAELRVDHDNLVARVDTAERNIGSLTTELSTLTLRVTSIQADFESRISTLER. 160
14 -13.3002xzr_A mol:protein length:114 IMMUNOGLOBULIN-BINDING PROTEIN EIBD  ali model follow..  29  4IEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI............................... 106
15 -10.4005app_A mol:protein length:133 GENERAL CONTROL PROTEIN GCN4, OUTER MEMBRANE PROTEIN 100  ali model follow..  27  4IEDKIEEILSKIYHIENEIARIKKLIQNVDVRSTENAARSRANEQKIA---ENKKAIENKADKADVEKNRAD-TFRSSSQNIAALTTKMKQIEDKIEEILSKIYHIENEIARIKKLIK................ 126
16 -10.4001kql_A mol:protein length:56 Fusion Protein of and striated muscle alpha-tropomyosin and the GCN4 leucine zipper  ali model follow..  54  2..DKVEELLSKNYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDMTSI............................................................................. 56
17 -10.3004c46_A mol:protein length:76 GENERAL CONTROL PROTEIN GCN4, GENERAL CONTROL PROTEIN GCN4  ali model follow..  36  9IEMKIEEILSKIYHIENEIARIKKLIEANDREINLVPASIKQIEWKIEEILSKIYHIE............................................................................ 66
18 -9.9302wpr_A mol:protein length:107 TRIMERIC AUTOTRANSPORTER ADHESIN FRAGMENT  ali model follow..  13  1....MKQIEDKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNINNLSDSITTLMKQIEDKIEEILSKIYHIENEIARIKKLIK.............................. 100
19 -9.0703q8t_A mol:protein length:96 Beclin-1  ali model follow..  23  4.........SDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLKKK................................ 96
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;