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Query: 2e0z_A mol:protein length:345 Virus-like particle, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELTGIEAHINDNKKEESNVEYFEKLRSALLDGVNKGRSLLKHLPVTRIEGQSFRVDIIKFEDGVRVVKQEYKPIPLLKKKFYVGIRELNDGTYDVSIATKAGELLVKDEESLVIREILSTEGIKKMKLSSWDNPEEALNDLMNALQEASNASAGPFGLIINPKRYAKLLKIYEKSGKMLVEVLKEIFRGGIIVTLNIDENKVIIFANTPAVLDVVVGQDVTLQELGPEGDDVAFLVSEAIGIRIKNPEAIVVLELast
1 -131.0002e0z_A mol:protein length:345 Virus-like particle  ali model  100  1MLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELTGIEAHINDNKKEESNVEYFEKLRSALLDGVNKGRSLLKHLPVTRIEGQSFRVDIIKFEDGVRVVKQEYKPIPLLKKKFYVGIRELNDGTYDVSIATKAGELLVKDEESLVIREILSTEGIKKMKLSSWDNPEEALNDLMNALQEASNASAGPFGLIINPKRYAKLLKIYEKSGKMLVEVLKEIFRGGIIVTLNIDENKVIIFANTPAVLDVVVGQDVTLQELGPEGDDVAFLVSEAIGIRIKNPEAIVVLE 345
2 -56.0004pt2_P mol:protein length:287 Encapsulin protein  ali model follow..  21  7......................................................................................................HAENPLREEEWARLNETVIQVARRSLVGRRILDIYGPSPGAVDIVGEQETAMVFTDARKFKTIPIIYKDFLLHWRDIEAAPLDVSAAAGAAALCAQQEDELIFYGLMTANGRLTVPLGDWTSPGGGFQAIVEATRKLNEQGFGPYAVVLSPRLYSQLHRIYEKTGVLEIETIRQLASDGVYQSNRLRGESGVVVSTGRENMDLAVSMDMVAAYLGASRMNHPFRVLEALLLRIKHPDAICTLE 279
3 -53.6003dkt_A mol:protein length:265 Maritimacin  ali model follow..  18  6......................................................................................................RSFAPLTEKQWQEIDNRAREIFKTQLYGRKFVDVEGPYGWEYAAHPLDENEVVKWGLRKSLPLIELRATFTLDLWELDNLEVDLSSLEETVRKVAEFEDEVIFRGVKGLLSFEERKIECGSTPKDLLEAIVRALSIFSKGIEGPYTLVINTDRWINFLKEEAGHYPLEKRVEECLRGGKIITTPRIEDA--LVVSERGGDFKLILGQDLSIGYEDREKDAVRLFITETFTFQVVNPEALILLK 264
4 -36.0005n5e_e mol:protein length:99 PFC_05175  ali model follow..  98  2GLSINPTLINRDKPYTKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGGFEEVKELTGIEA....................................................................................................................................................................................................................................................... 99
5 -35.7002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  16  12..........PIEKMADFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK-------EVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWEMYSQMMHIG..................................................................................................................................................................... 174
6 -35.2005wk1_A mol:protein length:352 Major Capsid Protein  ali model follow..  12  2...................................................SIHFDFKNKQGKELLALNRQWNELSGYRAHAFNESVNNVGETFGVNGANAMQTNMQRVDEMYRLVDSTGTGEDRDQTLLGRLLSQAQTVSIGKKVIESRRYSEAGRINRSMMVIPVFDGAYGRDFRDYEMLPALAEDSEEIEFTLLDDVNDYLWNGLKADASVAAYSLGTTATEAQVVAELLALLDVLRITNSGPFELYISPQIMSNWQKLAGANTNGFMNIMAAVRASVVEADSALQGNQVLCSVVGTRGLHAKIGMMMSSYQVPRVNDPYQFVKWFAAGFQSNNSKSTV... 349
7 -34.5001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  15  8..................KVSDILTVAIRLEEEGERFYRELSEHFNGE-IKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFPDTS-----EILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEM...................................................................................................................................................................................... 146
8 -31.3002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  16  4.................YTLAEFLAHAIALETEAAERYVELADMMENLDTATVFRDMARFSTLHGDEIKQRSRALELPK-------LMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKW...................................................................................................................................................................................... 145
9 -31.0003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model follow..  22  1MANDGYFE-PTQELSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAFDKELKDYLFTNKPIA........................................................................................................................................................................................................................................................... 93
10 -30.5002hz8_A mol:protein length:115 De novo designed diiron protein  ali model follow..  20  29...............DEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQGNAEQ.......................................................................................................................................................................................................................................................................... 92
11 -30.4005n5f_A mol:protein length:98 encapsulated ferritin  ali model follow..  16  1MGSSEQLHEPAELLSEETKNMHRALVTLIEELEAVDWYQQRADACSEPGLHDVLIHNKNEEVEHAMMTLEWIRRRSPVFDAHMRTYLFTERPILELEE....................................................................................................................................................................................................................................................... 98
12 -29.2005da5_A mol:protein length:116 Rru_A0973  ali model follow..  18  1MAQSSNSTHEPLEVLKEETVRHRAIVSVMEELEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKWAEHLRTYLFTEGPITAANSSSVDKLAAALE............................................................................................................................................................................................................................................ 110
13 -27.9003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  14  19................SEEEKEGLIEMREEEKLARDVYLTLYNKWK----LQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKF---EELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFV........................................................................................................................................................................................ 156
14 -27.2003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  14  14................SEEEKEGLIEMREEEKLARDVYLTLYNKWK----LQIFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKF---EELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFV........................................................................................................................................................................................ 151
15 -26.6003e8k_A mol:protein length:273 Major capsid protein  ali model follow..  11  80.............................................................................................................................................................................ASRQVMDDAPLQSYINNRLMYGLALKEEGQLLNGLNKVATAYDTSLN--ATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGGPNIMWGLPVVPTKAQAAGTFTVGGFD-MASQVFDRMDATVEVSREDRNMLTILCEERLALAHYRPTAIIKGT 268
16 -26.4004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  11  1MVFHKKEPIHVVNIGENPRFAQLLLEQFGGELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFPHFLDSQGNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKA...................................................................................................................................................................................... 173
17 -26.3005l8f_A mol:protein length:116 Rru_A0973  ali model follow..  18  3.QSSNSTHEPLEVLKEETVNRHRAIVSVMEALEAVDWYDQRVDASTDPELTAILAHNRDEAKEAAAMTLEWLRRNDAKWAEHLRTYLFTEGPIT........................................................................................................................................................................................................................................................... 95
18 -25.7003qpr_A mol:protein length:385 Major capsid protein  ali model follow..  9  1.............MSELALIQKAIEESQQKMTQLFDAQKAEIESTGQKQLQSDLMKVQEELTKSGTRLFDLEQKLASGAENPGEKKSFSERAAEELIKSWDGKQGTFGAKTFNKSLGSDIIMPGLRRLTIRDLLAQGRTSSNALEYVREEVFTNNADVVAEKALKPESDITFSASRQVMDDAPLQSYINNRLMYGLALKEEGQLLNGLNKVATAYDTSLN--ATGDTRADIIAHAIYQVTESEFSASGIVLNPRDWHNIALLKDNEGRYIFGGPNIMWGLPVVPTKAQAAGTFTVGGFD-MASQVWDRMDATVEVSREDRNMLTILCEERLALAHYRPTAIIKGT 380
19 -23.1001mft_A mol:protein length:53 Four-helix bundle model  ali model follow..  19  1....................MDYLRELYKLEQQAMKLYREASEKARNPEKKSVLQKILEDEEKHIEWLETIN................................................................................................................................................................................................................................................................................. 52
20 -22.3003sid_A mol:protein length:180 Symerythrin  ali model follow..  10  20.............AVSHNNTDANAASSIEVEMECDCMYPTFAEIARRPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKD-----SAETLEAKRLVSTIESQIDAVASDSRGLRRALETALEVETIESQAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRA...................................................................................................................................................................................... 172
21 -20.9006b0x_A mol:protein length:324 Major head protein  ali model follow..  12  114.............................................................................................................................................................................VTKEFLNYTYSQFFEEPMIAEAFYKKFDEAGILNQGNNPAQSIEKTNKVIKGDFTQDNIIDLEALLEDDELEANAFISKTQNRSLLRKIVDPETKERIRNSDSLDGLPVVNLKSSNLKRGELITGDFDKLIYGIPQLIEYKIDETEQDMVALRATMHVALHIADDKAFAKLV 311
22 -20.4002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  14  14.......EILEKSGLDIKKLVDKLVKATAAEFTTYYYYTILRMHLTGEGLKEIAEDARLEDRLHFELMTQRIYELGGG--------LPRDIRQLADISACSDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYGKDTYDLAQRILQEEIEHEAWFLEL...................................................................................................................................................................................... 166
23 -20.3001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  13  2............KDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLT-----------------------DPATDKPIGTLEQMIESAIAGETYEWT-FAKVAREEGFPEVAEWFETLARAEKSHAEKFQNV...................................................................................................................................................................................... 136
24 -20.2004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  10  6............AQLKGSKTEENLKYAFAGESQANRRYLYFASKADVNDIAALFRSTAEGETGHAHGHLEYLEAVGDP-------------------------TGLPFGTSRQNLQSAIAGETHEYTDMYPGMAKTARDEGIANWFETLAKAERSHANRYTKA...................................................................................................................................................................................... 138
25 -19.3002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  11  1.........SNAMSHDVKELIEGLNEDLAGEYSAIIMYNHNAATVSGQVLKPFFESEISDEQGHALYLAEKIKTLGGT---------------------TTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNLVVKLEDMIADETNHMEELDRL...................................................................................................................................................................................... 140
26 -18.9003jb5_A mol:protein length:315 major capsid protein  ali model follow..  11  73........................................................................................................................................................SAFTAQPIKVVTQQRVSDEFMWADADYRLGVLQDLISPALGASIGRAVDLIAFHGIDPATGKANKTKNIVDATDSATADLVKAVGLIAGAGLQPNGVALDPAFSFALSTEVYPKGSPLAAGLDNWRGLNVGASSTVSGAPEMSPASGVSRVHWGFQRNFPIELIEYGHNEVMVRAEAVLYVAIESLDSFAVVK 302
27 -17.9001yux_A mol:protein length:202 Nigerythrin  ali model follow..  15  17.......NMVADSKTSVGSTLENLKAAIAGETGAHAKYTAFAKAAREEQIARLFEATAAAELIHIGLEYALVAEMEPG-------------------YEKPTVAAPSAYSCDLNLISGANGEIYETSDMYPAFIRKAQEEGAVHVFTRAKLAESVHAERYLAA...................................................................................................................................................................................... 159
28 -17.5005tjt_A mol:protein length:299 Major capsid protein  ali model follow..  8  96.............................................................................................................................................................................ITDETEEDAIFSLLPLKRLIEAHAVSIEEAFMTGLLTLASEDSAKVVTEAKADGTAKTISKLRRKLGRHGLKLSKLVLIVSMDAYYDLLEDEEWQDVAQQVGRIYGLPVVVSEYFPASAEFAVIVYKDNFVMPRQRAVTVERERQGKQRDAYYVTQRVNLQRYFANGVVSGT 295
29 -17.4001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  16  1........MAGNREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLDDGELAANMKLIAIDEMRHAENFAERIKELGGE-------------------PTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGTARLFERIIEEEQAHLTYYENI...................................................................................................................................................................................... 142
30 -17.0004bml_A mol:protein length:332 MAJOR CAPSID PROTEIN  ali model follow..  11  31.................................................................................................................KLFSGEVFTAFNNASIFKGLVRSYDLRGGKSK-TPIVGDAGIKANEKTLVMDDLLVSSQFVYSLDEIFSQYSTRASKQIGEALATHYDERIARVLAKASAEASIGAGNTNDAQAIVDGFFEAAAVLDERSAPQ-VAVLSPRQYYSLISSVDQGDMNSGKGLYSIAGIRILKSNNLAGSALAGLIFHREAAGCIQSVAPTIQTTSGDFNVQYIVGKLAMGCGSLRTSVAGSFQ 330
31 -16.8005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  16  1MLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLLPE--SHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFS-------GLHQNFQTAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLN........................................................................................................................................................................................... 150
32 -16.6003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  14  12.........GPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLNDTRLAKKEREESIEEMHHADKLIDRIIFLEGF-------------------PNLQTVSPLRIGQNVKEVLEADLKGEYDARASYKESREICGDYVSKQLFDELLADEEGHIDFLETQ...................................................................................................................................................................................... 152
33 -16.4001b71_A mol:protein length:191 PROTEIN (RUBRERYTHRIN)  ali model follow..  13  2............KSLKGSRTEKNILTAFAGESQARNRYNYFGGQAKKVQISDIFAETADQEREHAKRLFKFLEGGDLE--------------------IVAAFPAGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGIARVFASIAVAEEFHEKRFLDF...................................................................................................................................................................................... 138
34 -16.3003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  14  4................DAKVIEYLNAALRSELTAVSQYWLHYRLQEDGSIAHKSRKESIEEMHHADKLIQRIIFLGGH-------------------PNLQRLNPLRIGQTLRETLDADLAAEHDARTLYIEARDHCRDYPSKMLFEELIADEEGHIDYLETQ...................................................................................................................................................................................... 137
35 -16.3001nnq_A mol:protein length:171 Rubrerythrin  ali model follow..  18  2.............VVKRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQENIAKLFRAIAYAEFVHAKNHFIALGKLGKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKEKAEK.............................................................................................................................................................................................................. 130
36 -16.1005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  17  4................DKTVIQFLNKQLTNELTAINQYFLHARMLNHDKLGKHEYEESIGEMKHADRLIARIFMLDGL-------------------PNLQDLHKLLIGEDVPELLACDLKLEQAAHATVREAIAHCRDYVSRDLFQDILDDTEEHIDYLETQ...................................................................................................................................................................................... 137
37 -16.1002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  12  1.........ASGSMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQDNTELAAHTRAESFDEMRHAEEITDRILLLDGL-------------------PNYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQ...................................................................................................................................................................................... 141
38 -16.1005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  16  4................DPEVIEFLNEQLTAELTAINQYFLHAKLQDHTKLAKYTRAESFDEMRHAEVLTDRILLLDGL-------------------PNYQRLFHVRVGQSVTEMFQADREVELEAIDRLRRGIEVMHDITSANVFEAILADEEHHIDYLETQ...................................................................................................................................................................................... 137
39 -16.1001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  17  4................DAKVIEFLNAALRSELTAISQYWVHFRLQEDAKMAKKSREESIEEMGHADKIIARILFLEGH-------------------PNLQKLDPLRIGEGPRETLECDLAGEHDALKLYREARDYCGDIVSKNIFESLITDEEGHVDFLETQ...................................................................................................................................................................................... 137
40 -16.0001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  17  4................DTKVINYLNKLLGNELVAINQYFLHARMFKNKRLNDVEYHESIDEMKHADRYIERILFLEGL-------------------PNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDEEGHIDWLETE...................................................................................................................................................................................... 137
41 -16.0004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  16  4................DQKVIEYLNRGLRSELTAVSQYWLHYRMLEDKDLAKKWRAESIEEMAHADKFVERILFLEGL-------------------PNLQTLDPLRIGQTVKEVLESDLAAEREARALYQEGAAYAGDFPSKNLFEELMGDEEHHIDFLETQ...................................................................................................................................................................................... 137
42 -15.9003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  13  4................DPDVLKLLNEQLTSELTAINQYFLHSKMQDNTELAEHTRAESFEEMRHAETITDRILLLDGL-------------------PNYQRLFSLRVGQTLREQFEADLAIEYEVLERLKPGIVLCQDATSARLLEQILADEETHIDYLETQ...................................................................................................................................................................................... 137
43 -15.8001jku_A mol:protein length:266 pseudocatalase  ali model follow..  23  133...............SSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEK........................................................................................................................................................................................................................................................................... 195
44 -15.7005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  15  4................DKKVIQHLNKILGNELIAINQYFLHSRMWNDKRLGAHEYHESIDEMKHADKLIERILFLEGA-------------------PNLQDLGKLLIGANTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQ...................................................................................................................................................................................... 137
45 -15.7004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  17  1............AMKGDTKVINYLNKLLGNELVAINQYFLHARMFKNKRLNDVEYRESIDEMKHADRYIERILFLEGL-------------------PNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYARDYVSRDMMIEILRDEEGHIDWLETE...................................................................................................................................................................................... 138
46 -15.7003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  13  6................DPDVLRLLNEQLTSELTAINQYFLHSKMQDNTELAAHTRAESFDEMRHAEEITDRILLLDGL-------------------PNYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCQDTTSAVLLEKIVADEEEHIDYLETQLELM---------DKLGEELYSAQCVSRPPTKLAAALE................................................................................................................................................ 168
47 -15.6003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  15  4................DKKVIQHLNKILGNELIAINQYFLHSRMWNDKRLGAHEYHESIDEMKHADKLIERILFLEGL-------------------PNLQDLGKLLIGENTQEMLQCDLNLELKATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQ...................................................................................................................................................................................... 137
48 -15.5003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  16  4................DTKVINYLNKLLGNELVAINQYFLHARMFKNKRLNDVEYHESIDEMKHADRYIERILFLEGL-------------------PNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYAHDYVSRDMMIEILRDERGHIDWLRTE...................................................................................................................................................................................... 137
49 -15.5001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  17  1.............MKGDKIVIQHLNKILGNELIAINQYFLHARMYEDEKLGKHEYHESIDEMKHADKLIKRILFLEGL--------------------NLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCGDYASRELLEDILESEEDHIDWLETQ...................................................................................................................................................................................... 137
50 -15.4002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  14  140...............TSGNLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVE.......................................................................................................................................................................................................................................................................... 203
51 -15.3002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  13  11............GKLDVKSLIDQLNAALSEEWLAYYQYWVGALVVEGADVQGEFEEHAEEERHHAQLIADRIIELEGV----------PVLDPKKWFELARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTNGKDTCDIAKHILAEEEEHEQDLQDY...................................................................................................................................................................................... 156
52 -15.3004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  16  4................DKKVIQHLNKILGNELIAINQYFLHSRMWNDKRLGAHEYHESIDEMKHADKLIERILFLEGL-------------------PNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCHDYVSRDLLKDILESEEEHIDYLETQ...................................................................................................................................................................................... 137
53 -15.3001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  20  144...............EKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHC.............................................................................................................................................................................................................................................................................. 203
54 -15.2005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  13  8.....SAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLPD--HAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGD--------TTCMVIQALIIECFAIAAYNVYIPVA-DAFARKVTEGVVKDEYTHLN........................................................................................................................................................................................... 150
55 -15.2004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  18  14............SEIYKDAYSRINAIVIEGEQEAYSNYLQMAELLPE--DKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFA-------GLHGNFQHAFSEGKVVTCLLIQALIIEAFAIAAYNIYIPVA-DDFARKITEGVVKDEYTHLN........................................................................................................................................................................................... 149
56 -15.0004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  17  28............SDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFA-------PLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLN........................................................................................................................................................................................... 163
57 -15.0004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  17  5...EASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLPD--QRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFE-------RLHENFKAAAAEGKVVTCLLIQSLIIECFAIAAYNIYIPVA-DAFARKITEGVVRDEYLHRN........................................................................................................................................................................................... 149
58 -14.9005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  17  40............TETYKDAYSRINAIVIEGEQEAHDNYLTLAELLAD--KKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFS-------ELHKNFQTAAAQGQIVTCLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLN........................................................................................................................................................................................... 175
59 -14.9004etr_A mol:protein length:153 Putative uncharacterized protein  ali model follow..  9  5............NQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLELGGK-------PKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRAL...................................................................................................................................................................................... 148
60 -14.7002xvr_A mol:protein length:345 MAJOR CAPSID PROTEIN 10A  ali model follow..  12  30.................................................................................................................KVFGGEVLTAFARTSVTTSRHMVRSISSGKSA-TQAAYLAPGENLDDKRKDIKHTEKVITIDGLLTADVLIYSEYTSQLGESLAMAADGAVLAEIAGLCNVESKYNEN-ALGKEIIAALTKARAALTKNYVPA-VFYCDPDSYSAILAALMALIDPEKGSIRNVMGFEVVEVPHLTAGGAIGLFMHRSAVGTVKLRDLALEARRANFQADQIIAKYAMGHGGLRPEAAGAVV 341
61 -14.6004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  16  28............SDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLPD--HVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFA-------PLRDNFQTALGQGKTPTCLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLN........................................................................................................................................................................................... 163
62 -14.4003r2h_A mol:protein length:154 Bacterioferritin  ali model follow..  16  4................HPEVIDYLNTLLTGELAARDQYFIHSRMYEDSKLYERLNHEMEEETQHADALLRRILLLEGT---------------------RMRPDDIHPGTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRD-LADTEEDHAYWLEQQ...................................................................................................................................................................................... 137
63 -14.2002xd8_A mol:protein length:375 T7-LIKE CAPSID PROTEIN  ali model follow..  18  117...................................................................................................................................................................................AHYELRGEISKKIGYALAEKYDRLIFRSITRGARSSGTNESDAFTASALVNAFYDAAAAMDEKGVSS-CAVLNPRQYYALIQDIGGSALQSGNGVIEIAGIHIYKSMNIPFLGKCGLIFQKEAAGVVEAIGPQVQVTNGDVSVIYILGRMAMGADYLNPAAAVELY 366
64 -13.5005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  15  8............SAAYREAYSRINGVVIVGEGLANRHFQMLARRIPA--DRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGN--------AECLVIQGLIVECFAVAAYRHYLPVA-DAYARPITAAVMNDESEHLD........................................................................................................................................................................................... 143
65 -13.1002ib0_A mol:protein length:170 CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN  ali model follow..  10  13..........KRSPSEGSADNAALCDALAVEHATIYGYGIVSALS-PPGVNFLVADALKQHRHRRDDVIVMLSARGVTAP-----------------IAAAGYQLPMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMAT........................................................................................................................................................................................... 142
66 -12.9005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  14  40............SETYKDAYSRINAIVIEGEDEAANNYVRLAELMPE--QSEELASLAKMEARHKKGFTACGKNLNVT-------PDMDFAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAISAYNVYIPHA-DDFARKITENVVKDEYLHLNFGEQWLKAN------FESAKDELERANRENLAIVWRMLDEVAGDALVLGMEKEA-------------EDFTIAYQEALQNI.......................................................................................................... 239
67 -12.8003hl1_A mol:protein length:317 Ferritin like protein  ali model follow..  16  3...........PPVWTLPRLYQHFQGAIDLELWTIPYYLTVLYSIKDTVPYRLIQAAVYQEMLHAQLVSNIANAYGYS........................................................................................................................................................................................................................................................................... 71
68 -12.5002lfd_A mol:protein length:115 Diiron protein  ali model follow..  18  22........LKKAKEGDEQELARLNQEIVKAEKQGVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWHKAASKQGNAEQ.......................................................................................................................................................................................................................................................................... 92
69 -11.8004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  13.............QDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKL--------EVSNLPLFNWEDVIAFTFLVDGAGLYQLKILKD-CSFEPLSTLASSMIKEEESHIFFSQN-------------LRNYQNKNRMQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKC.......................................................................................................... 217
70 -11.0003qz3_A mol:protein length:184 Ferritin  ali model follow..  15  1.....SNAMNQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDKGFDGALRAHAVEEMQHMQRLFTYVSETGAL--EVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQWYVAEQHEEEKLFKGILDKLE............................................................................................................................................................................................................... 151
71 -10.8003bjq_A mol:protein length:316 Phage-related protein  ali model follow..  12  106......................................................................................................................................................................................DLGARSVNTVLRIMALAHEHECAQIALDPAKVKLVGSARWTSPSDPTKDVETAKEAIADSGMEPNRLMLSRKALSACKYHPKRAESITIDMLKALWEVEIVVGTAVWGPDVWLGYVSDNTYQIEGHPLVEVPYWDNNAKSWIYGVSDDNTPALSGMLAGYLIE 309
72 -10.6004zkh_A mol:protein length:169 Ferritin  ali model follow..  13  1...............GSEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEAYMLAQSAEEREHGLGFVDFANKRNIP----------------IELQAVPAPVSCAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKI...................................................................................................................................................................................... 135
73 -10.5001u7j_A mol:protein length:49 Four-helix bundle model  ali model follow..  23  1....................MDYLRELYKLEQQAMKLYREASERVGDP----VLAKILEDEEKHIEWLETI.................................................................................................................................................................................................................................................................................. 47
74 -10.5004zlw_A mol:protein length:168 Ferritin  ali model follow..  15  1...............GSEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEAYMLAESAEEREHGLGFVDFANKRNIP----------------IELQAVPAPVSCAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCH............................................................................................................................................................................................................ 113
75 -10.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  9  9............PQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPS----IKLFDGLVEDFQSSRWRENIATRFHMITEGV---TVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSF-----------GLSLIEDKEYAVKRVEELFPLAVQIVKEGKDKIEPLGYSIQELVNLME----ELKKARINKILGS.............................................................................................................. 212
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.