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Query: 2e6z_A mol:protein length:59 Transcription elongation factor SPT5, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .
# Score Template Links and tools%idFirst GSSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYLast
1 -34.2002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model  100  1GSSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKY 59
2 -18.6004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  38  1.......FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN--GFTTPLEFPISTLRKI 50
3 -18.0002lcl_A mol:protein length:66 Transcriptional activator rfaH  ali model follow..  23  14.......PYPGDKVIITEGAFEGFQAIFTEPDGERSMLLLNLINKEIKHSVKNTEFRK. 65
4 -17.8005ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  19  125..RPKTLFEPGEMVRVNDGPFADFNGVVEEVDYERLKVSVSIFGRATPVELDFSQVEK. 182
5 -17.8006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  21  1.SNAKTLFEPGEMVRVNDGPFADFNGVVEEVDYERLKVSVSIFGRATPVELDFSQVEK. 59
6 -17.7002lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  19  123.......FKVGDMVKIISGPFEDFAGVIKEIDPEELKVNVTIFGRETPVVLHVSEVEK. 175
7 -17.7002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  21  10.......FEPGEMVRVNDGPFADFNGVVEEVDYERLKVSVSIFGRATPVELDFSQVEK. 62
8 -17.3001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  20  1...AQVAFREGDQVRVVSGPFADFTGTVTEINPEKVKVMVTIFGRETPVELDFSQVVK. 57
9 -17.2002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  19  9.......YEVGESVTVMDGPFATLPATISEVNAEKLKVLVSIFGRETPVELTFGQVSK. 61
10 -16.9005oik_Z mol:protein length:1087 Transcription elongation factor SPT5  ali model follow..  89  413GKEREHNFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKY 471
11 -16.5001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  29  195.......FEKGDQVRVIEGPFMNFTGTVEEVHPEKLTVMISIFGRMTPVELDFDQVEK. 247
12 -16.4002oug_A mol:protein length:162 Transcriptional activator rfaH  ali model follow..  20  103DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGERSMLLLNLINKEIKHSVKNTEFRK. 161
13 -16.2002xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  19  294..KVELGFKVGDMVKIISGPFEDFAGVIKEIDPERLKVNVTIFGRETPVVLHVSEVEK. 351
14 -15.8005xon_W mol:protein length:612 Protein that forms a complex with Spt4p  ali model follow..  39  269.AKNLVSFQPGDNVEIINGELNHLTGTVSSVNQSTIVSVRLHSDDDTTVEIPTSDLRKI 330
15 -15.0002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  21  12.QELRKYFKMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLT--MHELKVLPRDLQL. 66
16 -14.3004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  17  83.KKIIENIEKGDVVEIIAGPFKGERAKVIRVDKEEVTLELENAAVPIPITLPVEGVKI. 141
17 -13.1003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  21  86.KPAVSGLEPGDLVEVIAGPFKGQKAKVVKIDKDEVVVQFIDAIVPIPVTIKGDYVRL. 144
18 -12.6002e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  13  21..........GQTVRISQGPYKGYIGVVKDATESTARVELHST--CQTISVDRQRLT.. 65
19 -12.5005xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  13  21..........NKTVKIRQGGYKGKIGIVKEANGDRFRVELHNP--NKTIPIPCSFLL.. 65
20 -12.5005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  22  60........TKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE--QLKILNLRFLGKL 108
21 -12.2003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  23  62......KFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTVPVP....... 107
22 -12.1001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  25  37.GQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKT........... 83
23 -11.9005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  14  35.NVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKA........... 81
24 -11.8002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model follow..  25  44.GIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD.................. 83
25 -11.8002ckk_A mol:protein length:127 KIN17  ali model follow..  17  72........APGKRILVLNGGYRGNEGTLESINEKTIVIETGPLKGRRVEGIQYEDISKL 126
26 -11.7003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  20  43.KTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVE.................. 82
27 -11.7005t2a_X mol:protein length:143 uL24  ali model follow..  20  41.NVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHID.................. 80
28 -11.6005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  20  44.GIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVD.................. 83
29 -11.6003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  20  41.NVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILID.................. 80
30 -11.4005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  25  43.NVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIE.................. 82
31 -11.3004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  19  2..RVKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKK........... 47
32 -11.3005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  19  2......KVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKK........... 43
33 -11.2005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  19  2......KVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKK........... 43
34 -11.2004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  21  2......HIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKK........... 43
35 -11.2001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  19  10.HNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITK........... 56
36 -11.2003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  24  3.......VKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKK........... 43
37 -10.9003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  20  2....AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKH........... 45
38 -10.8004ce4_Y mol:protein length:216 MRPL24  ali model follow..  23  50.SDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYR........... 96
39 -10.7003j7y_V mol:protein length:216 uL24  ali model follow..  23  50.SDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYR........... 96
40 -10.5005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  23  64.KLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTK........... 110
41 -10.5005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  21  63.KLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTK........... 109
42 -10.0001s72_Q mol:protein length:96 50S ribosomal protein L21e  ali model follow..  14  28.QRAVEEFDDGEKVHLKIDPFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRR. 94
43 -9.0705oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  18  55.DSEQNNIHVKDIVKVIDGPHSGREGEIRHLFRSFAFL..................... 91
44 -9.0303j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  25  43.NVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIE.................. 83

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.