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Query: 2e85_A mol:protein length:159 Hydrogenase 3 maturation protease, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASAVTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEELast
1 -71.4002e85_A mol:protein length:159 Hydrogenase 3 maturation protease  ali model  100  1ASAVTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE 159
2 -58.8005zby_A mol:protein length:158 Hydrogenase maturation protease HycI  ali model follow..  25  9SGKTRIVICGIGNDVRGDDAFGVLVAERLKELKTPDVLILNCGEMPESYVGKIAAFKPDLVVFVDAIHFGGEIGEFIIADPLKTLGE-AVSTHGLPLRIVASYIKEQGSDIVLIGCQPGSTGLFEEPSELIKERAERLAELIAEILKN........... 157
3 -57.0003pu6_A mol:protein length:157 Uncharacterized protein  ali model follow..  31  2..SLKKVLLCVGNELRGDDGVAIALGRLVEEQ-MPEWSVFFGYDTPESEFGKLRELAPDVIVVADAMS-GFKEGEIEFLDLSDERT-YLYSTHNLPTPILISYLRGICSKTIFLGISENVLHFSEGLSQGASDSAFVALGRIKELDGML.......... 148
4 -55.2001cfz_A mol:protein length:162 HYDROGENASE 2 MATURATION PROTEASE  ali model follow..  17  1...MRILVLGVGNILLTDEAIGVRIVEALEQRLPDYVEILDGGTAGMELLGDMANR--DHLIIADAISKKNAPGTMMILRDEEVPALFKISPHQLGLADVLRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRSDS 162
5 -54.9005ttx_A mol:protein length:161 Hydrogenase 2 maturation peptidase  ali model follow..  18  5SAGKRVLVAGVGNRLMGDDGFGPRVVDLLSSMLPDYVDARDIGTAGITVATDLEDY--EKVIFLDSVELEGPPGRLSKSILEVRGLLARMTLHEVGLEGLLKFIGVLPGEVTLIGCIPRSLKPSLELSEEVEAATHAAVDLVLEALGL........... 160
6 -51.4005ija_A mol:protein length:148 Hydrogenase-specific maturation endopeptidase  ali model follow..  20  1...MRVLILALGNELMKDDGAGLKAGRILA---EKGYNVLEVGTDIFRLANHYNGE--ERIVIIDAILSDKKPGEVVHFSGEEIFKAEIRSAHFMGAIDGLKLLMALRAEIHFIGIVAKEIDLGMELSDEVKAGVQKAVEIAEKLAK............ 148
7 -8.8701nvm_B mol:protein length:312 acetaldehyde dehydrogenase (acylating)  ali model follow..  8  2NQKLKVAIIGSGN-------IGTDLMIKVLRNAK-DFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEHLGKLNVNMVTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDEFTETTSKAIEV........... 185
8 -8.6505zx8_A mol:protein length:187 Peptidyl-tRNA hydrolase  ali model follow..  13  1GSHMMFLVVGQGNP-RTRHNLGFMVLDRLGLSLKPLTYYNLTGRAVAPLARFYKIPPERILVVHDEMDL--PLGRIR------FKAGGSAAGNR-GVLSIEEALGTRAFHRLRLGIGKPP-PFREEELPVVERVLEAAKEAVWCWVRE........... 170
9 -8.5505tic_A mol:protein length:185 Acyl-CoA thioesterase I  ali model follow..  10  1.GGGMDTLLILGDSLSAGYRMSASWPALLNDKWQSKTSVVNASISGDTLPALLKQHQPRWVLV--------------ELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPA-NYGRRYNEAFSAIYPKLAKE.................. 134
10 -8.5205tid_A mol:protein length:185 Acyl-CoA thioesterase I  ali model follow..  10  1.GGGMDTLLILGDSLSAGYRMSASWPALLNDKWQSKTSVVNASISGDTSQQGLAR--------LPALLKQHQPRWVLVLGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPA-NYGRRYNEAFSAIYPKLAK................... 133
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Li W, Godzik A. In search for more accurate alignments in the twilight zone. Protein Sci. 2002 Jul;11(7):1702-13.