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Query: 2g2d_A mol:protein length:193 ATP:cobalamin adenosyltransferase, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHPDTQITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGGDRTASLast
1 -101.0002g2d_A mol:protein length:193 ATP:cobalamin adenosyltransferase  ali model  100  1MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHPDTQITDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPGGDRTAS 193
2 -92.9002zhy_A mol:protein length:183 ATP:cob(I)alamin adenosyltransferase, putative  ali model follow..  46  1MGNRLSKIATRTGDDGTTGLGDGSRVRKDDARIAAIGDVDELNSQIGVLLAEP-LPDDVRAALSAIQHDLFDLGGELCIPGHA-------AITDAHLARLDGWLAHYNGQLPPLEEFILPGGARGAALAHVCRTVCRRAERSIVALGASEP--LNAAPRRYVNRLSDLLFVLARVLNRAAGGADVLWDRTRAH 183
3 -91.5002r6x_A mol:protein length:194 Cobalamin adenosyltransferase PduO-like protein  ali model follow..  31  2ASAPMVKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVNELNSWVGYTKSLINSTQVLSNELEEIQQLLFDCGHDLATPADDERH-SFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQ--INQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKD. 191
4 -91.0002idx_A mol:protein length:196 Cob(I)yrinic acid a,c-diamide adenosyltransferase  ali model follow..  34  1....MPKIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFALELVTEGHTFAEELQKIQCTLQDVGSALATPCSSAREAKYTTFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCRAVCRRAERRVVPLVQMGE--TDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIYMKNDPS 190
5 -90.1003gah_A mol:protein length:194 Cobalamin adenosyltransferase PduO-like protein  ali model follow..  32  3.SAPMVKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTVLSNELEEIQQLLFDCGHDLATPADDERH-SFKFKQEQPTVWLEEKIDNYTQVVPAVKKHILPGGTQLASALHVARTITRRAERQIVQLMREEQ--INQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKD. 191
6 -89.9002r6t_A mol:protein length:194 Cobalamin adenosyltransferase PduO-like protein  ali model follow..  31  3.SAPMVKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHQVLSNELEEIQQLLFDCGHDLATPADDERH-SFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITKRAERQIVQLMREEQ--INQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKD. 191
7 -88.9005vl4_A mol:protein length:185 T33-53H-B  ali model follow..  33  1.......MFTRRGDQGETDLANRARVGKDSPVVEVQGTIDELNSFIGYALVLS-RWDDIRNDLFRIQNDLFVLGEDVSTGGKG------RTVTLEMILYLVERVTEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIKAASRLTE--INDNVLLYAAMLSSILFMHALISNKRLNIPEKIWSIHRVS 177
8 -88.6005cy5_B mol:protein length:185 T33-51H-B  ali model follow..  33  1.......MFTRRGDQGETDLANRARVGKDSPVVEVQGTIDELNSFIGYALVLS-RWDDIRNDLFRIQNDLFVLGEDVSTGGKGR------TVTMDMIIYLIKRSVEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIKAASELTE--INANVLLYANMLSNILFMHALISNKRLNIPEKIWSIHRVS 177
9 -88.3002ah6_A mol:protein length:208 BH1595, unknown conserved protein  ali model follow..  38  3.SDKIMRLYTRTGDKGKTSVIGG-RLAKDDTRVVAYGTTDELNSFVGSAITQLDENADIRGELFKIQHELFDCGGDLAMLKVKEDR--PYKAKQEIVDFLEQRIDAYIKEAPELERFILPGGSEAAASLHVCRTIARRAERYVVRLQQEGE--INPIVLKYLNRLSDYFFAVARVVNSRLQVPDVEYERSAIV 191
10 -88.1001nog_A mol:protein length:177 conserved hypothetical protein TA0546  ali model follow..  35  1.......MFTRRGDQGETDLANRARVGKDSPVVEVQGTIDELNSFIGYALVLS-RWDDIRNDLFRIQNDLFVLGEDVSTGGKG------RTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKLTE--INKNVLIYANRLSSILFMHALISNKRLNIPEKIWSIHRVS 177
11 -87.2001rty_A mol:protein length:193 yvqk protein  ali model follow..  37  2......KLYTKTGDKGQTGLVGG-RTDKDSLRVESYGTIDELNSFIGLALAELSGQEDLTAELLTIQHELFDCGGDLAIVTERKDY----KLTEESVSFLETRIDAYTAEAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKSEE--IHETVLRYLNRLSDYFFAGARVVNARSGIGDVEYERSAIV 184
12 -86.5003ke4_A mol:protein length:213 Hypothetical Cytosolic Protein  ali model follow..  38  12..GSHMKLYTKTGDKGTTSVIGG-RVDKDDIRVEAYGTIDEANSHIGYAMTKLQGGIDIYNELENIQHELFDCGGDLAIVEQKIPY----KVTIVMVESLERKIDLYIEEAPPLERFILPGGSEAAATIHIARTVVRRAERSIVSLQKEVK--INEVVLKYVNRLSDYLFAIARVINARLQVKDVEYNRSAVV 197
13 -85.8002nt8_A mol:protein length:223 Cobalamin adenosyltransferase  ali model follow..  32  27..DRSVKIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHQVLSNELEEIQQLLFDCGHDLATPADDERH-SFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQ--INQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRNSKD. 214
14 -85.8005cy5_A mol:protein length:172 T33-51H-A  ali model follow..  34  2......RITTKVGDKGSTRLFGGEEVWKDDPIIEANGTLDELTSFIGEAKHYV--DEEMKGILEEIQNDIYKIMGEIGSKGKI------EGISEERIKWLAGLIERYSEMVN-KLSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFG--IGTLAAIYLALLSRLLFLLARVIEIEKNKLKEVRS..... 172
15 -84.6001wvt_A mol:protein length:172 hypothetical protein ST2180  ali model follow..  33  2.......WYTGTGDKGKTKVPSVGEVWKDSEIVKALGDLDELNSVLGVVSSLY---PELSEVIQKLQNDIFSISSEIAGFDMN--------FSDEKVKGIEELITNYSKELEPLRNFVLPGGHIASSFLHLARAVCRRAERSVVTLLKESK--AKEVHAKYLNRLSSLLFVLALVVNKRTNNPNVIWRGKD.. 172
16 -84.1001wy1_A mol:protein length:172 hypothetical protein PH0671  ali model follow..  36  2......RITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYV--DEEMKGILEEIQNDIYKIMGEIGSKGKIE------GISEERIKWLEGLISRYEE-MVNLKSFVLPGGTLESAKLDVCRTIARRAERKVATVLREFG--IGKEALVYLNRLSDLLFLLARVIEIEKNKLKEVRS..... 172
17 -84.0004nwp_A mol:protein length:172 Putative uncharacterized protein  ali model follow..  33  2......RITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHYV--DEEMKGILEEIQNDIYKIMGEIGSKGKIE------GISEERIAWLLKLILRYME-MVNLKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFG--IGAEAAAYLLALSDLLFLLARVIEIEKNKLKEVRS..... 172
18 -82.7001woz_A mol:protein length:177 177aa long conserved hypothetical protein (ST1454)  ali model follow..  36  1.......MFTKSGDDGNTNVI-NKRVGKDSPLVNFLGDLDELNSFIGFAISKI-PWEDMKKDLERVQVELFEIGEDLSTQSSK------KKIDEKYVKWLEERTVEYRKESGPVKLFVIPGGSEEASVLHVTRSVARRVERNAVKYTKELPE-INRMIIVYLNRLSSLLFAMALVANKRRNVSEKIYDIGK.. 175
19 -76.1005im6_A mol:protein length:157 Designed self-assembling icosahedral cage I32-28 trimeric subunit  ali model follow..  42  2...........................GDDARIAAIGDVDELNSQIGVLLAEP-LPDDVRAALSAIQHDLFDLGGELCIPGHA-------AITEDHLLRLALWLVHYNGQLPPLEEFILPGGARGAALAHVCRTVCRRAERSIKALGASEP--LNIAPAAYVNLLSDLLFVLARVLNRAAGGADVLWDRTRAH 157
20 -10.1006c9k_A mol:protein length:319 DARP14 - Subunit A with DARPin  ali model follow..  35  2......RITTKVGDKGSTRLFGGEEVWKDSPIIEANGTLDELTSFIGEAKHY--VDEEMKGILEEIQNDIYKIMGEIGS------KGKIEGISEERIAWLLKLILRYMEMVN-LKSFVLPGGTLESAKLDVCRTIARRALRKVLTVTREFGIGAE--AAAYLLALSDLLFLLARVIEIELGKK.......... 167

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.