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Query: 2gl3_A mol:protein length:136 Hemoglobin-like protein HbN, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGLLSRLRKREPISIYDKIGGHEAIEVVVEDFFVRVLADDQLSAFFSGTNMSRLKGKVVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPVLast
1 -73.0002gl3_A mol:protein length:136 Hemoglobin-like protein HbN  ali model  100  1MGLLSRLRKREPISIYDKIGGHEAIEVVVEDFFVRVLADDQLSAFFSGTNMSRLKGKVVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV 136
2 -72.3001idr_A mol:protein length:136 HEMOGLOBIN HBN  ali model follow..  98  1MGLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV 136
3 -65.9003aq5_A mol:protein length:121 Group 1 truncated hemoglobin  ali model follow..  32  2.........NKPQTIYEKLGGENAMKAAVPLFYKKVLADERVKHFFKNTDMDHQTKQQTDFLTMLLGGPNHYKGKNMTEAHKGMNLQNLHFDAIIENLAATLKELGVTDAVINEAAKVIEHTRKDMLGK....... 121
4 -64.6001dlw_A mol:protein length:116 HEMOGLOBIN  ali model follow..  34  1.............SLFEQLGGQAAVQAVTAQFYANIQADATVATFFNGIDMPNQTNKTAAFLCAALGGPNAWTGRNLKEVHANMGVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRGDVVT........ 115
5 -63.0004xdi_A mol:protein length:135 Chlamydomonas reinhardtii THB1  ali model follow..  30  1.....AADTAPADSLYSRMGGEAAVEKAVDVFYERIVADPQLAPFFANVDMKKQRRKQVAFMTYVFGGSGAYEGRDLGASHRRLGMNHHHFDLVAAHLDSTLQELGVAQELKAEAMAIVASARPLIFGTGEAGAA. 134
6 -62.1006bme_A mol:protein length:128 Truncated hemoglobin 4  ali model follow..  30  1............STLHAKLGGAAAVAATVDVFYKKLMNDPDLEPFFRGVDMVTLIAKQNRFLAYAFGATTHYHGKDIVMGHAHLGLNLTHFDKVAGHFVDSLKEMGVGQELIDEAAGVLIGVRPLFDPERYKGK.. 126
7 -61.7002bmm_A mol:protein length:123 THERMOSTABLE HEMOGLOBIN FROM THERMOBIFIDA FUSCA  ali model follow..  16  2.............TFYEAVGGEETFTRLARRFYEGVAADPVLRPMYPEEDLGPAEERLRLFLMQYWGGPRTYSERRLRMRHFPYRIGAEERDRWLTHMRAAVDDLALPAHLEQQLWEYLVYAAYAMVNVPE..... 123
8 -60.8001dly_A mol:protein length:164 HEMOGLOBIN  ali model follow..  34  31AATAPAPARKCPSSLFAKLGGREAVEAAVDKFYNKIVADPTVSTYFSNTDMKVQRSKQFAFLAYALGGASEWKGKDMRTAHKDLHLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTRTEVLNMPQQ.... 164
9 -60.3005v3t_A mol:protein length:132 Globin  ali model follow..  22  2........SKQPMTPFEAIGGEQCIEILVDTFYSYVSKHPDLSPIFPD-DLTETARKQKQFLTQYLGGPNLYTEEMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPNETGEI 132
10 -60.1004uur_A mol:protein length:145 PUTATIVE HEMOGLOBIN-LIKE OXYGEN-BINDING PROTEIN  ali model follow..  13  11.PATIEQTPTPEKTPYEILGGEAGALAIANRFYDIMATDEYAKPLYDPLPLDRIRQVFFEFLSGWLGGPDLFVAKMLRKRHMPFTIDQDLRDQWMYCMNKTLDLEVDNPLLREGLKQSFGQLASHMINQH...... 145
11 -59.7002ksc_A mol:protein length:123 Cyanoglobin  ali model follow..  32  1............ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVRNDVLNR....... 123
12 -59.5005d1v_A mol:protein length:127 Globin  ali model follow..  23  2..........SEPTIYEQIGGEATFRRIVDIFYARVEADPRLRHLFPA-DLEPGKEHQRLFLMQYFGGPRTYSERRLRMRHAPFPIGPRERDAWLEHMLAALNEAGVPEPARSVMENYFRHAAQAMMNRLGED... 127
13 -59.4001s69_A mol:protein length:124 Cyanoglobin  ali model follow..  32  2............STLYEKLGGTTAVDLAVDKFYERVLQDDRIKHFFADVDMAKQRAHQKAFLTYAFGGTDKYDGRYMREAHKELGLNGEHFDAVAEDLLATLKEMGVPEDLIAEVAAVAGAHKRDVLNQ....... 124
14 -59.3004uzv_A mol:protein length:164 HEMOGLOBIN  ali model follow..  17  23.VGAMTSQHDDQMTFYEAVGGEETFTRLARRFFEGVAADPVLRPMFPEEDLGPAEERLRLFLMQYWGGPETYSERRLRMRHEPYRIGAEERDRFLTHMRAAVDDLALPAHLEQQLWEYLVYAAYAMVNVPEDAQP. 160
15 -58.5002xyk_A mol:protein length:133 2-ON-2 HEMOGLOBIN  ali model follow..  16  2........SSETVTLYEAIGGDATVRALTRRFYELMDTLPEAARCRAPADLSGSEAKFYDYLTGYLGGPPVYVEKMLRRRHFVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERLAFHMQNQEADN... 132
16 -58.2001ngk_A mol:protein length:128 Hemoglobin-like protein HbO  ali model follow..  19  2...........PKSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRLRMRHAPFRISLIERDAWLRCMHTAVASITLDDEHRRELLDYLEMAAHSLVNSP...... 127
17 -58.2002bkm_A mol:protein length:128 TRUNCATED HEMOGLOBIN FROM GEOBACILLUS STEAROTHERMOPHILUS  ali model follow..  21  1.........EQWQTLYEAIGGEETVAKLVEAFYRRVAAHPDLRPIFPD-DLTETAHKQKQFLTQYLGGPPLYTAEMLRARHLRFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYHRLVLTAHHMVNTPDHL... 127
18 -50.7001ux8_A mol:protein length:132 YJBI PROTEIN  ali model follow..  21  2........GQSFNAPYEAIGE-ELLSQLVDTFYERVASHPLLKPIFPS-DLTETARKQKQFLTQYLGGPPLYTHPMLRARHLPFPITNERADAWLSCMKDAMDHVGLEGEIREFLFGRLELTARHMVNQTEAE... 128
19 -49.0004nk1_A mol:protein length:193 Hemoglobin-like protein  ali model follow..  17  39RIDFVFPEVKFPSKKVYLAAGEELLRKLVEVHHENLMKSKIHYLFPSHEQLRSLVKRSADFVVEMCGGPPYYTLTKMRARHFSVTIDEKAREIWLACYKHALKDVHFPLSVLEEFWQWIESFSIRMINRRTTLEPP 179
20 -48.9004c0n_A mol:protein length:175 2-ON-2 HEMOGLOBIN  ali model follow..  17  14.VDQAEAFAIDESNLFDKLGL-QTFINLSTNFYTRVYDDEEEWSIFSNSNKEDAIQNQYEFFVQRMGGPPLYSQRALIGRHRPFPVTHQAAERWLEHMQNALDDVDIDQDSKIKMMKFFRHTAFFLVAGNELKNQ. 153
21 -46.0002ig3_A mol:protein length:127 Group III truncated haemoglobin  ali model follow..  20  1..............MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAEWKEHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEE-MKNVILQRAQMIASHFQNM....... 120
22 -16.5001tu9_A mol:protein length:134 hypothetical protein PA3967  ali model follow..  16  2.......HMNAADRVMQSYGRCCASTGFFDDFYRHFLASPQIRAKFATTDMTAQKHLLRAGIMNLVMYARGMSDSKLRASRAALDIRPELYDLWLDALLMAVAEHDCDAETRDAWRDVMGRGIAVIKSYYGS.... 134
23 -15.0002w31_A mol:protein length:162 GLOBIN  ali model follow..  13  29.....................ETNKERLADQFYDYLLGIPETAEFLKEDLLQKLKQTHQDWFVSLFAGSNRYIHNKIGHAHVRVGLNAHAMNVVRQFTLSIIQDNFPDPEERRQRREAVEKI.............. 138
24 -14.8001or4_A mol:protein length:178 Heme-based aerotactic transducer hemAT  ali model follow..  13  59.....................QENIVNIVDAFYKNLDHESSLMDIINDHSVDRLKQTLKRHIQEMFAGVDEFIEKRNRSIHLRIGLLPKAFQELLLSMIDIYEASITNQQELLKAIKATTKI.............. 168
25 -14.4004zvb_A mol:protein length:163 Diguanylate cyclase DosC  ali model follow..  13  32.....................VAHAHYLSIEFYRIVRIDPHAEEFLSNEQERQLKSAMERWIINVLSAQVDDVERTVAEVHARIGIPVE-FRVLKKILYPVIFSSDYSAAEKLQVYHFSINS.............. 143
26 -14.0004zva_A mol:protein length:165 Diguanylate cyclase DosC  ali model follow..  13  27.....................VAHAHYLSIEFYRIVRIDPHAEEFLSNEQERQLKSAMERWIINVLSAQVDDVERTVAEVHARIGIPVE-FRVLKKILYPVIFSSDYSAAEKLQVYHFSINS.............. 138
27 -14.0004uii_A mol:protein length:217 GGDEF DOMAIN PROTEIN  ali model follow..  15  74.....................TTHQSELPGYFYEQMLQDEQAMLFLTHEQKSRLHGTLRQWIVSVFSMSQALIAQQKQEIHARIKIPIH-ARHLRERLFVLLRQRPLDPEHKLFGQRLISET.............. 187
28 -13.6004uiq_A mol:protein length:177 GLOBIN-COUPLED SENSOR WITH DIGUANYLATE CYCLASE ACTIVITY  ali model follow..  14  32.....................TANKAALADYFYESMLADPNAAFFLSDQLKTKLHASMQDWLESVYAAAPT-FQRKVGEVHARIDIPVHLVTRGASALIRRIRDASLSAAQAAATCRYVADV.............. 145
29 -13.1005ohe_A mol:protein length:161 Globin-coupled histidine kinase  ali model follow..  16  34.....................APHFPRLAEEFYDRILGHEGARTALGESQVGHLKVTMIAWLDELLGGPEAYWDRRYRRVHVRIGLPQHYMFGAMNVHRTGLERFHGDPPELERVRNALGKV.............. 145
30 -12.6002veb_A mol:protein length:195 PROTOGLOBIN  ali model follow..  35........TAEDEEYIQKAGEEDQVEEILDTWYGFVGSHPHLLYYFTSPDLAAVRKRFSRWILDTSNRSQAWLDYEIGLRHHRTKKNQTDNYPITATMKPFLARKGHTPEEVEKMYQAWFKA.............. 177
31 -11.6003wfw_A mol:protein length:138 Hemoglobin-like flavoprotein fused to Roadblock/LC7 domain  ali model follow..  11  21.........................DEAGLLFYRRLFDEPKVRPLF-KIDIEKQGRKLMDVLNWIVLNLQDIDARELARRHVKYGVKAEHYPVVGHTLIWTLRKMEWTKQLEQLWTQAYEALAQVMIEE....... 132
32 -11.2003s1i_A mol:protein length:139 Hemoglobin-like flavoprotein  ali model follow..  17  22.........................NEIGLLFYANLFKEPTVSVLFQN-PISSQSRKLMQVLGILVQGIDNLEGQDLGRRHKQYGVVDSHYPLVGDCLLKSIQEYGFTEEAKAAWTKVYGIAAQVMTAE....... 133
33 -11.1002wy4_A mol:protein length:140 SINGLE DOMAIN HAEMOGLOBIN  ali model follow..  13  21.........................EDLTNEFYKIMFNYPEVKPMFNMQISGEQPKALAMAILMAAKNIENLENDKVAITHVNLGVKEEHYPIVGACLLKAIKNLNPDEATLKAWEVAYGKIAKFYIDIEKK.... 136
34 -10.5001vhb_A mol:protein length:146 HEMOGLOBIN  ali model follow..  13  22.........................VTITTTFYKNLFAHPEVRPLFDRQESLEQPKALAMTVLAAAQNIENLPAKKIAVKHCQAGVAAAHYPIVGQELLGAIKEVAATDDILDAWGKAYGVIADVFIQVEAD.... 139
35 -10.3001gcv_B mol:protein length:136 HEMOGLOBIN  ali model follow..  4........TQEERDEISKTFQGTDMKTVVTQALDRMFKYPWTNRYFQKRTDFRSSIHAGIVVGALQDAVKHMDDKDLSKKHADLHVDPGSFHLLTDCIIVELAYLCFTPHIQGIWDKFFEVVIDAISKQ....... 134
36 -10.1001jf3_A mol:protein length:147 monomer hemoglobin component III  ali model follow..  16  11............ASTWKDIAGADNGAGVGKECLSKFISHPEMAAVFSDPGVAELGAKVLAQIGVAVSHLGDEG-KAVGVRHKGYGIKAEYFEPLGASLLSAMEHRKMNAAAKDAWAAAYGDISGALISGLQS.... 147
37 -10.1001cg5_B mol:protein length:141 PROTEIN (HEMOGLOBIN)  ali model follow..  11  4........SEDQEHYIKGVWKDVDHKQITAKALERVFVYPWTTRLFSKANDIGVQQHADKVQRALGEAIDDLKKQNLSGKHQEIGVDTQNFKLLGQTFMVELALHTFRPKEHAAAYKFFRLVAEALSSN....... 139
38 -9.9901bin_A mol:protein length:143 LEGHEMOGLOBIN A  ali model follow..  16  19.....................KANIPQYSVVFYTSILEAPAAKDLFTNPKLTGHAEKLFALVRDSAGQLKASG-AALGSVHAQKAVTDPQFVVVKEALLKTIKAAKWSDELSRAWEVAYDELAAAIKKA....... 143
39 -9.7801jf4_A mol:protein length:147 monomer hemoglobin component IV  ali model follow..  18  3....SAAQRQVVASTWKDIAGSDNGAGVGKECFTKFLSHHDMAAVFSDPGVADLGAKVLAQIGVAVSHLGDEG-KAVGVRHKGYGIKAEYFEPLGASLLSAMEHRKMNAAAKDAWAAAYADISGALISGLQS.... 147
40 -9.7003mkb_B mol:protein length:136 Hemoglobin subunit beta  ali model follow..  4........TQEERDEIVKTFFSANSSAIGTKALERMFVFPWTNAYFAKXXXFSASIHAAIVVGALQDAVKHEDDVNISKAHAKLHIDPGSFHLLTDSFIVELAHLAFTPFVFAVWIKFFQVVIDAISSQ....... 134
41 -9.7001gdi_A mol:protein length:153 LEGHEMOGLOBIN (CARBONMONOXY)  ali model follow..  18  19.....................NANIPKHTHRFFILVLEAPAAKDLFNNPELQAHAGKVFKLVYEAAIQLEVTG-KNLGSVHVSKGVADAHFPVVKEAILKTIKEVKWSEELNSAWTIAYDELAIVIKKEMDDAA.. 153
42 -9.5101hbg_A mol:protein length:147 HEMOGLOBIN (CARBONMONOXY)  ali model follow..  18  11............AATWKDIAGADNGAGVGKKCLIKFLSHPQMAAVFSDPGVAALGAKVLAQIGVAVSHLGDEG-KAVGVRHKGYGIKAQYFEPLGASLLSAMEHRKMNAAAKDAWAAAYADISGALISGLQS.... 147
43 -9.4101eca_A mol:protein length:136 ERYTHROCRUORIN (AQUO MET)  ali model follow..  12  14......................DKVKGDPVGILYAVFKAPSIMAKFGTAPFETHANRIVGFFSKIIGELPNIEANTFVASHKPRGVTHDQLNNFRAGFVSYMKAHTDFAGAEAAWGATLDTFFGMIFSK....... 135
44 -9.3202wtg_A mol:protein length:159 GLOBIN-LIKE PROTEIN  ali model follow..  1MSMNRQEISDLCVKSLEGRGTEAQNIENGNAFYRYFFTNPDLRVYFKSERFDKQGQRILLACHLLANVYTNEE-RETINRHRIYKMDPALWMAFFTVFTGYLESGSLNDQQKAAWMALGKEFNAESQTHLKN.... 153
45 -9.2602vyw_A mol:protein length:148 HEMOGLOBIN  ali model follow..  11  3..LTQTQIDSILADLAHHTDTTEHITEMGVSIYKTLFAAPEYISYFSSEGIRYYGRTLGEELIRLLKAASNPS-VQGAKDHKARPVTKDQFTGAAPIFIKFFQGLLKKQEDKDAIEKFLLHVMQAIAAK....... 147
46 -9.1801kr7_A mol:protein length:110 Neural globin  ali model follow..  18  2......................VNWAAVVDDFYQELFKHPEYQNKFGFKGVAAYKTQAGKTVDYINAAIGGSADAGLASRHKGRNVGSAEFHNAKACLAKACSA................................ 93
47 -9.0604f68_A mol:protein length:110 Neural hemoglobin  ali model follow..  28  2......................VNWAAVVDDFFQELFKHPEYQNKFGNAAYKTLAGKVVDYINAWIGGSAD---AGLASRHKGRNVGSAEFHNAKACLAKACSA................................ 93
48 -9.0402r4x_A mol:protein length:146 Globin-1  ali model follow..  26.....................GSDKKGNGVALMTTLFADQETIGYFANDKLRGVSITLMYALQNFIDQLDNPD-EKFAVNHITRKISAAEFGKMNGPIKKVLASKNFGDKYANAWAKLVAVVQAAL.......... 146

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.