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Query: 2grx_C mol:protein length:229 Protein tonB, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSSSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQLast
1 -71.2002grx_C mol:protein length:229 Protein tonB  ali model  100  1GSSSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ 223
2 -52.1001xx3_A mol:protein length:144 TonB protein  ali model follow..  100  2......................................................................................VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVNILFKINGTTEIQ 138
3 -40.8006fip_A mol:protein length:99 Protein TonB  ali model follow..  41  1..............................................................................................................................SHMGSLNDSDIKPLRMDPPVYPRMAQARGIEGRVKVLFTITSDGRIDDIQVLESVPSRMFDREVRQAMAKWRFEPRVSGGQATKMFFFKIEKR.... 98
4 -40.6002k9k_A mol:protein length:106 TonB2  ali model follow..  30  1......................................................................................................................DHPFTSAPTFGDFGSNQQAMPLYRVEPVYPSRALKRGVEGFVTLSFTIDTTGKAVDINVVDANPKRMFEREAMQALKKWKYQPQIVDGGQTVTVEFKIA...... 105
5 -29.6002m2k_A mol:protein length:131 HasB protein  ali model follow..  19  1.................................................................................................KVQEQSVGAPPPGRADKTAAPQTRLTPYAQAGEDNWRSRISGRLNRFKRYPKDALRLKRQGVGQVRFTLDRQGHVLAVTLVSSAGLPSLDREIQALVKRASPLPTPPADELTLPIDFSLRGA.... 129
6 -28.3005lw8_A mol:protein length:92 Protein TonB  ali model follow..  22  17.................................................................................................................................................RYPKMAQIRGIEGEVLVSFTINADGSVTDIKVVKSNTTDILNHAALEAIKSAAHLFPKPEETVKIPIAYSLKED.... 92
7 -19.3001tol_A mol:protein length:222 PROTEIN (FUSION PROTEIN CONSISTING OF MINOR COAT PROTEIN, GLYCINE RICH LINKER, TOLA, AND A HIS TAG)  ali model follow..  7  9.......................AKSHTENSFTNVWKDDKTLDRYANYEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGSEGGGDDIFGELSSGKNAPKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSASYAGTCTLRIKLAPDGMLLDIKP--EGGDPALCQAALAAAKLAKI-PKPPSQAVNAPLDFKPAAA.... 216
8 -15.2001lr0_A mol:protein length:129 TolA protein  ali model follow..  18  2........................................................................................................RALAELLSDTTERQQALADEVGSEVTGSLDDLIVNLVSQQWRRPPSARNG----SVEVLIEMLPDGTITNASVSRSSGDKPFDSSAVAAVRNVGRIPEMQQL--QRRIIFKPED..... 120
9 -12.5003qdp_A mol:protein length:127 Protein tolA  ali model follow..  11  2............................................................................................................SSGKNAPKTGGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSASYAGTCTLRIKLAPDGMLLDIKP--EGGDPALCQAALAAAKLAKI-PKPPSQAVNAPLDFK........ 120
10 -12.1004g7x_B mol:protein length:138 TolA protein  ali model follow..  12  2.......................................................................................................GSSSSGLVPRGSHMPNDIFGSLSEESQQNNAARQQFVTSEVGRYGAIYTQLSFRGQCRVNLKLIPTGTGALLGLTVLDGDSRLCAATKRAVAQVNSFPLPKDQ--NINLTVA........ 130
11 -10.1001s62_A mol:protein length:106 TolA protein  ali model follow..  14  18.................................................................................................................................................NYAGQIKSASYAGTCTLRIKLAPDGMLLDIKP--EGGDPALCQAALAAAKLAKI-PKPPSQAVNAPLDFK........ 99
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.