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Query: 2hz8_A mol:protein length:115 De novo designed diiron protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDELRELLKAEQQAIKIYKEVLKKAKEGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQGNAEQFASLVQQILQDEQRHVEEIEKKNLast
1 -52.4002hz8_A mol:protein length:115 De novo designed diiron protein  ali model  100  1MDELRELLKAEQQAIKIYKEVLKKAKEGDEQELARLIQEIVKAEKQAVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQGNAEQFASLVQQILQDEQRHVEEIEKKN 115
2 -33.0005n5e_e mol:protein length:99 PFC_05175  ali model follow..  20  17............................TKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQVTELKGG--FEEVKELTGIE... 98
3 -30.6001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  13  48.QERIHAEIFRKMSDQENWDETSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKREST.......................... 151
4 -30.5002e0z_A mol:protein length:345 Virus-like particle  ali model follow..  20  16............................TKEELMEILRLAIIAELDAINLYEQMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQ....................... 79
5 -29.4002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  28  17............................ADFSLEELLGMAIKAEIGAREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGK....................... 80
6 -28.3004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  12  64.EEFSHLEMVGKLIEAHTKNAWTASYLNEGGDVVRDLRANIAAEAGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKLTDPFFGNVQPDETVALYYNLSSNG 204
7 -28.2002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  16  89...........................HYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS....................... 153
8 -27.3003k6c_A mol:protein length:95 Uncharacterized protein NE0167  ali model follow..  15  13..........................LSDETRDMHRAIISLREELEAVDLYNQRVNACKDKELKAILAHNRDEEKEHAAMLLEWIRRCDPAF....................... 78
9 -26.3001mft_A mol:protein length:53 Four-helix bundle model  ali model follow..  60  2..................................DYLRELYKLEQQAMKLYREASEKARNPEKKSVLQKILEDEEKHIEWLETIN.............................. 52
10 -26.3003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  12  53.SEQTHMDAVKYLLEKYFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSN........................ 160
11 -25.9003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  12  58.SEQTHMDAVKYLLEKYFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSN........................ 165
12 -25.4005da5_A mol:protein length:116 Rru_A0973  ali model follow..  16  15..........................LKEETVNRHRAIVSVMEELEAVDWYDQRVDASTDPELTAILAHNRDEEKEHAAMTLEWLRRNDAKW....................... 80
13 -23.3005n5f_A mol:protein length:98 encapsulated ferritin  ali model follow..  15  13.........................LLSEETKNMHRALVTLIEELEAVDWYQQRADACSEPGLHDVLIHNKNEEVEHAMMTLEWIRRRSPV........................ 78
14 -23.0005l8f_A mol:protein length:116 Rru_A0973  ali model follow..  12  14.........................VLKEETVNRHRAIVSVMEALEAVDWYDQRVDASTDPELTAILAHNRDEAKEAAAMTLEWLRRNDAK........................ 79
15 -22.9002lfd_A mol:protein length:115 Diiron protein  ali model follow..  94  1MDELRELLKAEQQGIKILKEVLKKAKEGDEQELARLNQEIVKAEKQGVKVYKEAAEKARNPEKRQVIDKILEDEEKHIEWHKAASKQGNAEQFASLVQQHLQDEQRHVEEIEKKN 115
16 -21.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  13  106.EEHLHAIALREANEDVRVQHVMKGYRAEKYTQVETLVYMAFYERCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHC........................... 203
17 -21.7003sid_A mol:protein length:180 Symerythrin  ali model follow..  22  116...............................GLRRALETALEVETIESQAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE......................... 178
18 -19.0002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  15  54.DEQGHALYLAEKIKTLGGTTTIPLRVKQAEDVREMLEYARQSEYETIKRYEKRKEQAAMTELVVKLEDMIADETNHMEELDRLLNDKA.......................... 145
19 -19.0001jku_A mol:protein length:266 pseudocatalase  ali model follow..  13  127......................NAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEK........................ 195
20 -18.6002cwl_A mol:protein length:302 manganese-free pseudocatalase  ali model follow..  15  143...............................NLILDLLHNFFLEVAARTHKLRVYEMTDNPVAREMIGYLLVRGGVHAAAYGKALESLTGVEMTKMLPIPKIDNSKIPEAKKYMD 226
21 -18.5004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  15  9............................KGSKTEENLKYAFAGESQANRRYLYFASKADVNDIAALFRSTAEGETGHAHGHLEYLEAVGDP........................ 74
22 -18.4002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  13  69.EDRLHFELMTQRIYELGGGLPDAYLPENWKDPKEILKVLLEAEQCAIRTWKEVCDMTYDPRTYDLAQRILQEEIEHEAWFLELLYGRP.......................... 171
23 -17.9004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  14  58KMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHELLIQSLIIECFAIAAYNIYIPVA-DAFARKITEGVVRDEYLHRNFGEEWLKANFDAS....................... 162
24 -17.9005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  15  60.MENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGMVIQALIIECFAIAAYNVYIPVA-DAFARKVTEGVVKDEYTHLNFGQQWLKERFVT........................ 162
25 -17.9004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  15  59.MENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGLLIQALIIEAFAIAAYNIYIPVA-DDFARKITEGVVKDEYTHLNYGEEWLKANFATA....................... 162
26 -17.8005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  14  85.MENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLQAHFEES....................... 188
27 -17.8005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  16  60.MESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQLLIQSLIIECFAIAAYNIYIPVA-DDFARKITEGVVKEEYSHLNFGEVWLKEHFAES....................... 163
28 -17.7005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  20  50.DEMRHAEVLTDRILLLDGLP-RLFHVRVGQSVTEMFQADREVELEAIDRLRRGIEVMRDITSANVFEAILADEEHHIDYLETQLDLIE.......................... 142
29 -17.7001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  14  55.DEMRHAENFAERIKELGGEP-KEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKDIVTARLFERIIEEEQAHLTYYENIGSHIK.......................... 147
30 -17.5002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  17  54.DEMRHAEEITDRILLLDGLP-RIGSLRIGQTLREQFEADLAIEYDVLNRLKPGCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD.......................... 146
31 -17.4003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  22  65.EEMHHADKLIDRIIFLEGFP-TVSPLRIGQNVKEVLEADLKGEYDARASYKESCDKLGDYVSKQLFDELLADEEGHIDFLETQLDLLA.......................... 157
32 -17.3003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  23  50.EEMHHADKLIQRIIFLGGHP-RLNPLRIGQTLRETLDADLAAEHDARTLYIEACEKVRDYPSKMLFEELIADEEGHIDYLETQIDLMG.......................... 142
33 -17.3003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  15  50.EEMRHAETITDRILLLDGLP-RLFSLRVGQTLREQFEADLAIEYEVLERLKPGCREKQDATSARLLEQILADEETHIDYLETQLQLMD.......................... 142
34 -17.0003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  17  52.DEMRHAEEITDRILLLDGLP-RIGSLRIGQTLREQFEADLAIEYDVLNRLKPGCREKQDTTSAVLLEKIVADEEEHIDYLETQLELMD.......................... 144
35 -17.0005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  14  85.MEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGLLIQALIIEAFAISAYNVYIPHA-DDFARKITENVVKDEYLHLNFGEQWLKANFESA....................... 188
36 -17.0001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  15  50.EEMGHADKIIARILFLEGHP-KLDPLRIGEGPRETLECDLAGEHDALKLYREACAEVGDIVSKNIFESLITDEEGHVDFLETQISLYD.......................... 142
37 -16.9004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  15  73.MEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLES........................ 175
38 -16.9002vzb_A mol:protein length:170 PUTATIVE BACTERIOFERRITIN-RELATED PROTEIN  ali model follow..  22  102...............................DSVSLLNQNVSSERCAILRYQEIANFTNDYTTCDIAKHILAEEEEHEQDLQDYLTDIA.......................... 161
39 -16.8004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  16  73.MEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDLLIQALLIEAFAISAYHTYIPVS-DPFARKITEGVVKDEYTHLNYGEAWLKANLES........................ 175
40 -16.5001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  22  5............................KGTKTAENLKQGFIGESMANRRYLYFAKRADEPEIAGLLRSIAEGETAHAFGHLDFIRQGGLT........................ 70
41 -16.4004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  17  50.EEMAHADKFVERILFLEGLP-TLDPLRIGQTVKEVLESDLAAEREARALYQEGAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVS.......................... 142
42 -16.3005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  20  50.GEMKHADRLIARIFMLDGLP-DLHKLLIGEDVPELLACDLKLEQAAHATVREACESVRDYVSRDLFQDILDDTEEHIDYLETQIDLID.......................... 142
43 -16.2001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  20  50.DEMKHADRYIERILFLEGLP-DLGKLNIGEDVEEMLRSDLALELDGAKNLREAADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQ.......................... 142
44 -16.2004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  21  51.DEMKHADRYIERILFLEGLP-DLGKLNIGEDVEEMLRSDLALELDGAKNLREAADSVRDYVSRDMMIEILRDEEGHIDWLETELDLIQ.......................... 143
45 -16.1001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  21  50.DEMKHADKLIKRILFLEGLP-ELGKLLIGEHTKEMLECDLKLEQAGLPDLKAACESVGDYASRELLEDILESEEDHIDWLETQLDLID.......................... 142
46 -16.0003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  19  50.DEMKHADRYIERILFLLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAADSVHDYVSRDMMIEILRDERGHIDWLRTELDLIQ.......................... 142
47 -15.9001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  13  142.EENRHRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGRQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKL........................... 243
48 -15.9004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  22  50.DEMKHADKLIERILFLEGLP-DLGKLLIGENTQEMLQSDLNLELCATKDLREACEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQ.......................... 142
49 -15.8001yux_A mol:protein length:202 Nigerythrin  ali model follow..  15  25............................SVGSTLENLKAAIAGETGAHAKYTAFAKAAREEQIARLFEATAAAELIHIGLEYALVAEMEPG........................ 90
50 -15.8003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  22  50.DEMKHADKLIERILFLEGLP-DLGKLLIGENTQEMLQCDLNLELKATKDLREACEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQ.......................... 142
51 -15.7005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  22  50.DEMKHADKLIERILFLEGAP-DLGKLLIGANTQEMLQCDLNLELKATKDLREACEQVHDYVSRDLLKDILESEEEHIDYLETQLGLIQ.......................... 142
52 -15.4005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  14  53.MEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLVIQGLIVECFAVAAYRHYLPVA-DAYARPITAAVMNDESEHLDYAETWLQRHFDQ........................ 155
53 -15.2004etr_A mol:protein length:153 Putative uncharacterized protein  ali model follow..  10  2......................SHMNQTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQLKAAMLEQSRDCAAAADELERIVLEL........................... 67
54 -15.0003hl1_A mol:protein length:317 Ferritin like protein  ali model follow..  10  5..........................VWTLPRLYQHFQGAIDLELWTIPYYLTVLYSIKDTVPYRLIQAAVYQEMLHAQLVSNIANAYGYS........................ 71
55 -14.9002ib0_A mol:protein length:170 CONSERVED HYPOTHETICAL ALANINE RICH PROTEIN  ali model follow..  13  95...............................SAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRV............................... 147
56 -14.7002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  11  117.EENRHRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKL........................... 218
57 -14.0005ux1_A mol:protein length:237 tRNA-(MS(2)IO(6)A)-hydroxylase-like  ali model follow..  14  83.EELEHFEQVLAPSPGYGADLARQIRKGEPQRMLDSFLVAGLIEARSHERMALLAEHSPDPQLRELYSDLLASEARHFGLYWVLCEQRYPRE....................... 185
58 -14.0001b71_A mol:protein length:191 PROTEIN (RUBRERYTHRIN)  ali model follow..  16  5............................KGSRTEKNILTAFAGESQARNRYNYFGGQAKKVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHANLIASAAGE 94
59 -13.9004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  18  6...................RSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLFVAKLVSDELNHGWQLVRLLEEF........................... 74
60 -13.6003r2h_A mol:protein length:154 Bacterioferritin  ali model follow..  11  50.EETQHADALLRRILLLEGTRMRPDDIHPGTTVPEMLEADLKLERHVRAALAKGCEQHKDFVSRDILKALADTEEDHAYWLEQQLGLIA.......................... 142
61 -13.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  2..................DKNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKLSFEKAKIIANYSLQQVIEEIEHFDFFNEYFKED........................... 71
62 -13.1002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  11  143VDESFHTYMHMLAIDRTRERRVLADMPEQWERDIAVLVWGAVAETCINALLALLARDATQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQD 277
63 -12.9005u1b_A mol:protein length:189 MtrE protein,Ferritin chimera  ali model follow..  12  27...............................DIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDLFLFDHAAEEYEHAKKLIVFLNENNVPVQLTSISAPEHKFEGLTQIFQKA. 112
64 -12.9003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  15  20...................EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETL........................... 88
65 -12.4003qz3_A mol:protein length:184 Ferritin  ali model follow..  10  1..................SNAMNQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCEDDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRHDFASLGEVFRET. 99
66 -12.4003oj5_A mol:protein length:189 Ferritin family protein  ali model follow..  16  8.............................KTKFHALMQEQIHNEFTAAQQYVAIAVYFDSEDLPQLFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRNQFDRPREALALA. 95
67 -12.3004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  15  23...................EPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETL........................... 91
68 -12.1001nnq_A mol:protein length:171 Rubrerythrin  ali model follow..  19  4............................KRTMTKKFLEEAFAGESMAHMRYLIFAEKAEQENIAKLFRAIAYAEFVHAKNHFIALGKLGK......................... 68
69 -11.9002jd6_0 mol:protein length:174 FERRITIN HOMOLOG  ali model follow..  5...............................RMLKALNDQLNRELYSAYLYFAMAAYFEDLGLENWMKAQAEEEIGHALRFYNYIYDRNGRVELDEIPKPPKEWESPLKAFEAA. 90
70 -11.9003bve_A mol:protein length:181 Ferritin  ali model follow..  12  13...............................DIIKLLNEQVNKEMNSSNLYMSMSSWCYTHSLDLFLFDHAAEEYEHAKKLIIFLNENNVPVQLTSISAPEHKFEGLTQIFQKA. 98
71 -11.9001krq_A mol:protein length:167 ferritin  ali model follow..  16  5...............................EVVKLLNEQINKEMYAANLYLSMSSWCYENSLDAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKT. 90
72 -11.8001u7j_A mol:protein length:49 Four-helix bundle model  ali model follow..  53  1.................................MDYLRELYKLEQQAMKLYREASERVGDP----VLAKILEDEEKHIEWLETI............................... 47
73 -11.7005ls9_A mol:protein length:173 Ferritin, putative  ali model follow..  7...............................KMVEALNRQINAEIYSAYLYLSMASYFDSKGFSNWMRVQWQEELCHAMKMFDFVSERGGRIFLQDIKKPDSEWESPLAAFEHV. 92
74 -11.6003kx9_A mol:protein length:173 Ferritin  ali model follow..  7...............................KMVEALNRQINAEIYSAYLYLSMASYFDSKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHV. 92
75 -11.6001s3q_A mol:protein length:173 ferritin  ali model follow..  7...............................KMVEALNRQINAEIYSAYLYLSMASYFDSKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSEWDSPLAAFEHV. 92

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;