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Query: 2iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGSSSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPWLast
1 -109.0002iuw_A mol:protein length:238 ALKYLATED REPAIR PROTEIN ALKB HOMOLOG 3  ali model  100  1MGSSSSGLVPRGSHMRVIDREGVYEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITMEPNPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDPRGAPW 232
2 -91.1003rzg_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  32  1......................GSMSWRHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTARVQVFGKWHSVPRKQATYGDATYTFSGLTLSP-KPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERDLAPGSPIASVSFGASRDFVFRHKDSRGKSPS-RRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK.... 209
3 -90.9003h8o_A mol:protein length:209 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  33  9..............................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTARVQVFGKWHSVPRKQATYGDATYTFSGLTLSP-KPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHIGEHRDDCRELAPGSPIASVSFGASRDFVFRHKDSRG-KSPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLTKK.... 209
4 -90.7003rzm_A mol:protein length:206 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  34  7..............................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTARVQVFGKWHSVPRKQATYGDATYTFSGLTLSP-KPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGK-SPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLT...... 205
5 -90.5004mgt_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  33  7..............................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYALARVQVFGKWHSVPAKQATYGDATYTFSGLTLSP-KPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPS-RRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKILLG...... 205
6 -89.2004mg2_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2  ali model follow..  34  7..............................RAEGLDSSYTVLFGKAEADEIFQELEKEVEYALARVQVAGKWHSVPRKQATYGDATYTFSGLTLSP-KPWIPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGK-SPSRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL........ 203
7 -54.7003lfm_A mol:protein length:495 Protein fto  ali model follow..  20  1MGSSSSGLVPRGSHMTPKDDYQQWQLKYPKLILREASSVSEELHKE-VQEAFLTLHKHGCLFRDLVRIQGKDLLTPVSRILIGNPTYKYLNTRLFTVPVGMGSSYNGQDEVDIKSRAAYNVTLLNFFGMGKMAVSWHHDENLVDRSAVAVYSYSCEGPEEESEDDSHLEGRDPDDIETPGLAIPLHQGDCYFMLDDLNATHQHCVLAGS---QPRFSSTHRVAECS...... 311
8 -52.9004nj4_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  15  1MSSGVDLGTENLYFQSMPERSDYEEQQLQKEEEARGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGVHQLVIQKLVEHRVIPEGFVNSAVINDYQPG-GCIVSHVDPIHIFER--PIVSVSFFSDSALCFGCKFQFKPIRV--SEPVLSLPVRRGSVTVLSGYAADEITHCIRPQ-DIKERRAVIILRKTRLDA..... 241
9 -50.4003khb_A mol:protein length:219 Alpha-ketoglutarate-dependent dioxygenase alkB  ali model follow..  16  2...........PHMLDLFADAEPWQEPLAA----GAVILRRFAFNAAEQLIRDINDSQSPFRQMVTPGGYTMSVAMTNCGHLGWTGYLYSPIDPQTNKPWPAMLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLR--APIVSVSLGLPAIFQFGGLKRND--------PLKRLLLEHGDVVVWGGESR-LFYHGIQPHPLTIDCRYNLTFRQAGKKE..... 219
10 -49.4004o61_A mol:protein length:222 RNA demethylase ALKBH5  ali model follow..  14  17....................................IRQMRLFSQDECAKIEARIDEVVSRAERNKYFFGEGYTYGAQLQKRGPGRLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPG-GCIVSHVDPIHIFER--PIVSVSFFSDSALCFGCKFQFKPIRV--SEPVLSLPVRRGSVTVLSGYAADEITHCIRPQ-DIKERRAVIILRKTRLDA..... 217
11 -49.3004npl_A mol:protein length:250 RNA demethylase ALKBH5  ali model follow..  16  20....................................IKQASIFTLEECARIEAKIDEVVAKADKGLYREHTVDRAPLRNKYFFGEGYTYGAQLEKRGPGVHELVIDRLVTHGVIPEGFVNSAVINDYQPG-GCIVSHVDPIHIFER--PIVSVSFFSDSALCFGCKFLFKPIRV--SEPVLHLPVRRGSVTVLSGYAADDITHCIRPQ-DIKERRAVIILRKTRAD...... 219
12 -48.6005xeg_A mol:protein length:231 Oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed  ali model follow..  18  13...................................MVLLKKFLKHDDQVDIIRRCQKSGGFYTPGYRDGGKLSLQMMCLGKNWDNSRSYGKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGLHQDKDETKLHKGLPVVSFSLGDTAEFLYGDVNDVD--------KASKVDLESGDVLIFGGKSRLIF-HGVSREAKLRPGRLNLTFRQH......... 231
13 -47.5002fd8_A mol:protein length:211 Alkylated DNA repair protein alkB  ali model follow..  19  9...................................AVILRRFAFNAAEQLIRDDVASQSPFRQ-MVTPGGYTMSVAMTNCGHLG-GYLYSPIDPQTNPAMPQSFHNLCQRAATAAGFQPDACLINRYAPGAKLSLHQDKDEPDLR--APIVSVSLGLPAIFQFGGLKRND--------PLKRLLLEHGDVVVWGGESR-LFYHGIQPHPLTIDCRYNLTFRQAGKKEN.... 207
14 -46.8004nig_A mol:protein length:205 Alpha-ketoglutarate-dependent dioxygenase AlkB  ali model follow..  17  8...................................AVILRRFAFNAAEQLIRDDVASQSPFRQMVTP-GGYTMSVAMTNCGHLG-GYLYSPIDPQTNKPWPAMLCQRAATAAGYPDFQPDACLINRYAPGAKLCLHQDKIHPDLR--APIVSVSLGLPAIFQFGGLKRND--------PLKRLLLEHGDVVVWGGESR-LFYHGIQPLKATIDCRYNLTFRQAGKKE..... 205
15 -45.3003thp_A mol:protein length:345 Alkylated DNA repair protein alkB homolog 8  ali model follow..  16  113...................................LMVVEEIISSEEE----KMLLESVDWTEDTDNQNSQKSLKHRRVKHFGHYENNNVDKDKPLSGGLPDICESFLEKWKGYIKHKPDQMTINQYEPGQG-IPAHIDTHSAFE--DEIVSLSLGSEIVMDFKHPDG----------IAVPVMLPRRSLLVMTGESRYLWTHGITCRKFKRGLRTSFTFRKVRQTPCNCSY 321
16 -45.2004qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  14  5......................GSGPSVLSRLQDAAVVRPGFLSTAEEETLSRELEPELRRRRYE---YDHWDAAIH--------GFRETEKSRWS-EASMAIMRRVQAAAFGPGQTLLSSVHVLDLEAR-GYIKPHVDSIKFCG--ATIAGLSLLSPSVMRLVHTQEPG--------EWLELLLEPGSLYILRGSARYDFSHEILRDEEPRGRRISVICRSLPEGMGP... 196
17 -15.6005iqs_A mol:protein length:315 WelO5  ali model follow..  9  40.................VKKYPTAIQDIIINRSFDGMIIRGVFPRDTMEQVARCLEEGNDGGMKSILNKNEEFGTKVAQIYYFASSAIFRQACRTMFQGSPDFEEQVESIFHSLSGQTYTPATIRLLLEG-REIAVHVGNDFTLLDLSDQLSYFIGELVVYSLEWNPQEASKYAQNQSQSVAYAPGPGDMLLFNGG---RYYHRVSEVIG-NSPRRTIGLAFSKQRDKIYYW 307
18 -15.0005ybm_A mol:protein length:314 PrhA  ali model follow..  10  6.SGLVPRGSHMPPRLQRFPATASADEIFAAFQEDGCVVIEGFISPEQVARFSQEVDPAMEKIPVEVTNNGNSNDRTKRFSKCVIASPTFRNEIIE-SDLMHELCDRVFSKPGEGMGYHFNDNMVIEVQPGAPAQRLHRDQSMGPAGPECVINFFCGATRLVPGSHLINERDCPQFGKIETVPAIMQPGDCYLMSGKV----IHGAGHNATTTDRRRALALAIIRRELRP... 250
19 -14.8005ybl_A mol:protein length:314 Multifunctional dioxygenase ausE  ali model follow..  13  6.SGLVPRGSHMPSRLQKFPATAPADEIYAAFKEDGCVIIEGFVPPDQMARFSQEIQPAMEKIQVQVTNDGNSNDRVKRFSKLVTTSPTFRH-EILENDLMHELLQRVFSKPGEGMGYHFNDTMVIEVQPGAPAQRLHRDQSMGPDAPECLVNFFCGATRLVPGSNRINATDCPQYGKIDSVPAIMQPGDCYMMSGKV----IHGAGHNATLSDQRRALAFSTIRRELRP... 250
20 -14.8005m0t_A mol:protein length:294 Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH  ali model follow..  11  1...GPTITETSKPTLRRIPRSAGDEAIFQVLQEDGVVVIEGFMSADQVRRFNGEIDPHMKQWELGQKSYQESYGMRQLSSLPLFSKLFRDELMNDEL---------LHGLCKRLFGPESGDYWLTTSEPGYHGQELHREHSPESMLNFLTALTDFGATRVLPGSHLWEDFSAPPPKADTAIPAVMNPGDAVLFTGKT-----HGAGKNNTTDFLRRGFPL............ 227
21 -14.4003w20_A mol:protein length:273 Putative uncharacterized protein  ali model follow..  8  1MQHTYPAQLMRFGTAARAEHMTIAAAIHALDADEADAIVMDIVPDGERDAWWDDEGF----SSSPFTKNAHHAGIVATSVTLGQLQREQGDKLVSKAAEYFGIACRVNDGLRTTREVEFLLATRRVYEPFEAPFNFHCDDPRQLGGFLTIQGADNDAGMVMMHAEYRETGAIAALERAAKIMLKPQPGQLTLFQSKN----LHAIER---CTSTRRTMGLFLIHTEDGWRMF 272
22 -14.1004y5s_A mol:protein length:315 Verruculogen synthase  ali model follow..  12  1...GPEFTVDSKPQLQRLAADADVDRMCRLLEEDGAFILKGLLPFDVVESFNRELDVQMAIPPPKGERLLADKYPPHFKYVPN---ATTCPTFRNTVLINPVIHAICEAYFQRTGDYWLSAAFLREIESGMPAQPFHRDDYQPLEAPPVSLSVIFGATEVILGSHR---TEVGTPERDQAVLATMDPGDVLIVRQRV----VHA-GNRTTAGKPRRVVLA............ 226
23 -13.6004iw3_A mol:protein length:229 Putative uncharacterized protein  ali model follow..  12  4.SSSGLVPRGSHMASHISPEHPMLAAVVDDLATHGWSQQAHFLPADLVRALAAECRRRDAEGELNPAGVGRGATQEVRETIRGDQIQWIDPGQAEACDQYLAAMDQLRLAINQGLGLEDFECHFALYPPG-AFYRRHLDRFRDDDRRMVSAVLYLGQLRMF-------------LADGVEHDVEPVAGCLVVF---LSGEVPHEVLPAGR---ERLSLT------------W 214
24 -13.3005y7t_B mol:protein length:315 Iron/alpha-ketoglutarate-dependent dioxygenase asqJ  ali model follow..  12  2....MTSKDHVKSQIPRLSAINDLHKIWPTVEEHGAAIIESFLSLDIVRRLNEEVDPFVKIEPIPAAKTKDHPNHVLSTTTRLVNVLAPISKAYREDVLNSKVLHRICSDAHVYGDYWVLMGAVMELAPSNPAQPLHRDMAPATSINFLVALSPFGATHVILGSHK---QNLSNVSMDATVRALMNPGDALLITDST-----HCGGAETTGTETRRLLTI............ 229
25 -12.6003dkq_A mol:protein length:243 PKHD-type hydroxylase Sbal_3634  ali model follow..  14  12................................QGMLIEIPNVFSKQEVSHLREQLDA-------------RRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFQFYPPLFNRYQGG-ETFGYHIDTPDGMIRTDLSATLFLGGELVI-------------QDTYGQQSIKLSAGSLVLYPSSS----LHQVTPVLS--GERTAAF------------W 186
26 -12.2004nao_A mol:protein length:326 Putative oxygenase  ali model follow..  12  1MRGSGSMTSQHQEHTGTFSIQSDPVEIHRAIVEDGVAIIEGFLTPEQVQKLNKDVDAPLKADREQLKFKADKKDDPHLADFIPDHVARVHNLVDFSHC--HELLHKICRLTEESGDYWLGYGAVIENGPGTTEQKWHRDQKEGPDAPEGMLNFFTGKTQYILGSNKRVELGEPDADH-PIEYVGLKPGDTTIVSGKI----THRGSDN-RSDKMRRAMPIMIIPSILTP... 248
27 -11.6003bvc_A mol:protein length:212 Uncharacterized protein Ism_01780  ali model follow..  11  15..........................................LSDHGPAIDAEEMESSC---YAIAEDDEAGQGWCEENGYPGYTSYASLTDLPWRFPIFADLVKSLDAHVAAFAEDELEDLWINILPEG-GSHASHIHPHSVISGTTYVSALKLEDPRHAMMMAAPARRKTARDELRQFIYVTPAVGDVLLWESWLR----HEVPMNMS-EDDRISVSFNYRWAE...... 205
28 -11.5004xaa_A mol:protein length:223 Putative oxygenase  ali model follow..  10  1................MTTATLDRAAAIERFRRDGFANAGPVLAPDAIARLKAGAERLIT-GLRSDDYWNFPVEGDERPVLYRVHNLEKQDWAPERDLLHREELAQLAAAFVDGPVVPTAYALVLKEPYRAAEVPWHRDRVNVGPRTVCNLSICLGCLEAVPGSHLLPAEVAKVRATGPVVPVPVSQGDVVVHDVRL----VHGSGPN-ANGSWRRTIVIEYADPAAPPAP. 223
29 -11.4002rg4_A mol:protein length:216 Uncharacterized protein  ali model follow..  10  19..........................................LSEHGPALDPAEFAASCYSIAEDDDAGQEWCEREGYPGY-------TSYASLTDLPWRFPIFADLVKSLDAHVAARLEDIWINILPEG-GVHGSHIHPHSVISGTTYVSALKLEDPRLPFMMAAPTRRKGAREELRTFRSVAPKVGDVLLWESWLR----HEVPMNMA-EEDRISVSFNYAWGE...... 209
30 -11.1002rdn_A mol:protein length:288 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II)/alpha-ketoglutarate dependent hydroxylase  ali model follow..  9  1...GSHMTNVTGDYTDCTPLLGDRAALDSFYEEHGYLFLRNVLDRDLVKTVAEQMREGLV---------GAADPHATLEELTIDSFESVDEVAMHDYVKYDAFWNSTIKVFEQVFGEPVFVFLSTTIRSFHYLTPFHQDGFYIGPNQDFRTFIPLGSHRRGKRDHVLNESFRRFGEDEHLLHSPMEPGDILLFHAHM----CHKSIPNLSKDPRLMRMSM............ 246
31 -11.0005zm2_A mol:protein length:306 Dioxygenase andA  ali model follow..  9  5.SSGLVPRGSHMPPIRRVNASQGSDAAYQILQEDGCVIVEQVICPNIIAKISDDVNRVMDKATI-----GAKKGEQTHIINMHNRTIHMGDLVLTSKTYRDELLNLAHEVLEKVFKKDSGDYWLNMGNPGAEAQRPHRDDMDPATSPDLMINITFGGTLLLPKSHT--PNADFYANAEDLPAAEMQVGDALIFTGKC-----HG---ANRSDKPRIGLALAAQPG....... 241
32 -11.0004diq_A mol:protein length:489 Lysine-specific demethylase NO66  ali model follow..  10  10.GPQVDNTGGEPAWDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRL-----WEREAVLVYQGLFSTADLDSMLRNEEVQFGSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVY-LTPPNSQGFAPHYDDIE-------AFVLQLEGRKLWRVALTSSPNFSQDDLGEPVLQTVLEPGDLLYF----PRGFIHQAECQDGVHSLHLTLST............ 263
33 -10.8003mgu_A mol:protein length:644 PKHD-type hydroxylase TPA1  ali model follow..  9  57.....................................TIHELVNDDLLRAVRKEIETEIHFTKKETDIYRQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT-INTYTKG-CHLLTHDDVIGSRRISFILYLPDPGGLRLF------PSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSF-HDVEE--KVDKHRLSIQ------------W 244
34 -10.7004nhk_A mol:protein length:647 PKHD-type hydroxylase TPA1  ali model follow..  9  54.....................................TIHELVNDDLLRAVRKEIETEIHFTKKETDIYRQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKTDMNTYTKG-CHLLTHDDVIGSRRISFILYLPDPGGLRLF------PSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSF-HDVEE--KVDKHRLSIQ------------W 241
35 -10.6004y4r_A mol:protein length:454 Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66  ali model follow..  12  23...........................................SRRRAARLFEWLIAPMPWEREAVLVYQGLFSTADLDSMLRNEEVQFGSLRLLCPQAFSTTVWQFLAVLQEQFGSMAGSNVY-LTPPNSQGFAPHYDDIE-------AFVLQLEGRKLWRVALTSSPNFSQDDLGEPVLQTVLEPGDLLYF----PRGFIHQAECQDGVHS--LHLTLS........... 246
36 -10.5003kt1_A mol:protein length:633 PKHD-type hydroxylase TPA1  ali model follow..  9  38.....................................TIHELVNDDLLRAVRKEIETEIHFTKKETDIYRQSGDLANLSGLDWDDLSRLPNLFKLRQILYSKQYRDFFGYVTKAGKLSGSKT-INTYTKG-CHLLTHDDVIGSRRISFILYLPDPGGLRLF------PSILPNVPHSDPSAKLVPQFNQIAFFKVLPGFSF-HDVEE--KVDKHRLSIQ------------W 225
37 -10.3002jij_A mol:protein length:233 PROLYL-4 HYDROXYLASE  ali model follow..  11  22................................SPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRT-----------STGTWFAKGEDSVISKIEKRVAQVTMIPLENLQVLHYHDGQKY---HYDNAGPEHGGQRVVTMLMGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFDGSNDPASLHG............................ 202
38 -10.3002xdv_A mol:protein length:442 MYC-INDUCED NUCLEAR ANTIGEN  ali model follow..  12  11...........................................NFDSPSSLFESLISPIKWEQKPLLIYGSLFKLTDLKSLCSRGMYYGRTIQFHQPQRFKDELWRIQEKLECYFGSLVGSNVY-ITPAGSQGLPPHYDDVE-------VFILQLEGEKHWRLYHREYSVEAEERIGRPVHEFMLKPGDLLYF----PRGTIHQ-ADTPAGLAHSTHVTIS........... 234
39 -10.2004xbz_A mol:protein length:334 EvdO1  ali model follow..  13  16MSSVGDLRVVNRIAECDIRRTGLLPEHVTAFRRQGVLVVRGLLTPQELADVQEAGRALI---DRAWSTRSMEDTVWTLEPDQPGAAPVRIEYVVDKARPIAMLAGLLLRIMEQLVGPNTWDSMVFKTPAGAPRLAWHRDAVGVTGAGRVIDAIYLESNYWGDDRLTATADQASEWDTTGAVPAVMQPGDLLLHNILT----LHGAPAVVGKQRRVIYFEYR........... 256
40 -10.0003nnf_A mol:protein length:344 CurA  ali model follow..  11  1MSSGVDLGTENLYFQSNAMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQKTLDQAKQESQISKEKVTLKLGGID------DIDTNDHAYDLVKYDFVSSFIQEKLALLNYITGKNLMIMHNALFEPNHKGLPWHVGVGSFTKTEDFGASIWIGGMQYVSTKIFPGEDVIDYTIKDGYEEDEYNLGDAFFFNKYV----LHSVPLKPGLHKLRRAFVIRLVDYDTR.... 272
41 -10.0006ax6_A mol:protein length:235 Procollagen lysyl hydroxylase and glycosyltransferase  ali model follow..  10  23LPTRKEEWEKKYLHPEFLSHLQNFKDFDYTEICNDV-YSFPLFTPAFCKEVIEVMDKANLWSKGGDSYFDPRIGGVESYPTQDTQLYEVGLDKQWHYVVFNYVAPFVRHLYNNYKTKDINLAFVVKYDMERQELAPHHDSS-TYTLNIALNEYG-AGGCEF--------------IRHKFIWQGQKVGYATIHAGKLLA--YHRALPITS--GKRYILV............. 225
42 -9.9202a1x_A mol:protein length:308 Phytanoyl-CoA dioxygenase  ali model follow..  9  2.GTISSASFHPQQFQYTLDNNVLTLEQRKFYEENGFLVIKNLVPDADIQRFRNEFEKICRKEVKPLGLTVMRDVTISKSEYAPSEKMITKVQDFQEDKELFRYCTEILKYVECFTGPNMHTMLINKPPDSGKKTSRHPLHQ-PFRPSDLIVCAWTGTHKGSLKPHDYPKWEGGYEENKARVHLVMEKGDTVFFHPLL----IHGSGQN-KTQGFRKAISCHFASAD...... 256
43 -9.7302fct_A mol:protein length:313 syringomycin biosynthesis enzyme 2  ali model follow..  11  2..............SHMSKKFALTAEQRASFEKNGFIGPFDAYSPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLASHICRP-------EICDRVESILGPNVLCWRTEFFYPGDEGTDWHQADPENEEFGGTITVTAFGTQNSMNYDETKRMTYEPKPDEASAVPMQMKAGQFIIFWSTL----MHSYPHSGESQEMRMGFASRYVPSF...... 262
44 -9.6804nhx_A mol:protein length:562 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 1  ali model follow..  8  4.SSSGLVPRGSHMNGKRPAEPGPARVGKKGKKEVMAEFSDAVTEETLKKQVAEAWSRRTPFSHEVIVMDMDPFLHCVIPNFIQSQDFLEGLQKELMNLDFHELFEDFRSWLSDISKIDLEDMSCAKYEFT-DALLCHDDELEG----AFILYLV-GTLDLY-------SIDEHFQPKQIVKSLIPSWNKLVFF--EVSPVSFHQVSEVLSEEKSRLSIS------------W 250
45 -9.4105ep9_A mol:protein length:305 SnoN,Epimerase SnoN  ali model follow..  10  4.SADQETEPGVPADLPAESDPAALERLAARYRRDGYVHVPGVLDAGEVAEYLAEARRLLAHEESVRWGSGAGTVMDYVADAQLGSDTMRRLATHP----------RIAALAEYLAGSPLRLFKLEVLKDASVPTAPHHDAF-PFSTAGTALTAWVGSHLLPDPDTGDEPWARPGEIWMPRVTVPLRAGDCTFHHART----VHSAGAN-STDEPRLSTSAVYMDAT...... 240
46 -9.4002y33_A mol:protein length:252 EGL NINE HOMOLOG 1  ali model follow..  13  1...GSHMASPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRA----DTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKIACYPGNG-TGYVRHVDNPNGDGRCTCIYYLN-GGILRI-----------FPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQPAYA---TRYAIT------------W 215
47 -9.3605epa_A mol:protein length:279 SnoK  ali model follow..  11  1MARSADPDPGGPTTAENLSKEAVRFYR-----EQGYVHIPRVLSETEVTAFRAACEEVLEKEGREIWGAGEDEVQVHYVAQAWQKHPELRSLVLHP---------EISGIALRLAGAPYSSDILVKEPKRTLPTLVHDDET-PLNELSATLTAWIGSHLRAREDRQEHMTSFADYPWQPRVAVPVRAGDVVFHHCRT----VHMAEAN-TSDSVRMAHGVVYMDAD...... 237
48 -9.2505l9v_A mol:protein length:252 Egl nine homolog 1  ali model follow..  13  1...GSHMASPNGQTKPLPALKLALEYIVPAMNKHGICVVDDFLGKETGQQIGDEVRAHDTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLICHCNGKLGSYK-AMVACYPGNG-TGYVRHVDNCNGDGRCTCIYYLN-GGILRI-----------FPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQPAYA---TRYAIT------------W 215
49 -9.0803gja_A mol:protein length:319 CytC3  ali model follow..  9  2............TTVSEQANFTFSPEEVARFERDGYIGPVKIFEPEEMTRRWNIIRRQLLDRSLAIYPDSNGKANISNYDRHLDIDLLAEHIMRP----------EIVDRVGSLIGRNLLCWRSEFFYQGDEGTDWHQADEGRPAFIGTITVTAFGTHTSMNYDESKGMDYDAKPDESQAYPMVLKPGEAVIFWSNT----MHSLPHTGSKTDYRMGFAARYVPTQ...... 264
50 -9.0102g19_A mol:protein length:244 Egl nine homolog 1  ali model follow..  12  1........MPNGQTKPLPALKLALEYIVPCMNKHGICVVDDFLGKETGQQIGDEVRA----DTGKFTDGQLVSQKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHCNGKLGSYKIACYPGNG-TGYVRHVDNPNGDGRCTCIYYLN-GGILRI-----------FPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQPAYA---TRYAIT............. 208
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.