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Query: 2joy_A mol:protein length:96 50S ribosomal protein L14e, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst MPAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPTLLast
1 -54.0002joy_A mol:protein length:96 50S ribosomal protein L14e  ali model  100  1MPAIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQKGASDEEVKKKLEESNLTEYMKEKIKIRMPTL 96
2 -42.4003j79_N mol:protein length:165 60S ribosomal protein eL14  ali model follow..  26  23.RFVEPGRLCLIEYGPYAGKLCFIVDIVTITRVIVDGAFI-TGVPRMVIPLKRLKLLKERIKINKNCKSGFLRKTVNSTKVLEEFNNSKLGKKMI. 115
3 -42.2005t5h_P mol:protein length:149 40S ribosomal protein L14  ali model follow..  27  1.NYIRAGRLVRIIRGPRQDRVGVVVDIIDGNRVLVENPAD-KKMWRHVQNLKNVEPLKFSVELSRNCSTKTLKNVLAEKKILEKYAATKSARRIA. 93
4 -42.0003jct_M mol:protein length:138 60S ribosomal protein L14-A  ali model follow..  31  13.RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPK--AGVPRQAINLGQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQ 105
5 -41.9006d90_M mol:protein length:198 eL14  ali model follow..  28  5.RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC--TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIE. 96
6 -40.6003jcs_K mol:protein length:233 ribosomal protein L14e  ali model follow..  26  63.HYICAGRLVRILRGPRQDRVGVIVDIVDANRVLVENPED-AKMWRHVQNLKNVEPLKYCVSVSRNCSAKALKDALASSKALEKYAKTRTAARVE. 155
7 -40.3005xxb_L mol:protein length:134 Ribosomal protein eL14  ali model follow..  29  6.RYYQPGRLCVVQYGPDAGKLCFVVDIINQTRVLVDGAGV-TGVKRQSMPVRRIALTDQYLKIPRSVRSATLKKALEKDDVIAKFNQSSWGKRRLA 99
8 -37.5005xy3_M mol:protein length:128 Ribosomal protein L14, putative  ali model follow..  25  5.QFVEIGRVALINFGELVDKLAIIVDIVDDKRVLIDVLE--FDAPRQTIPIQRLKLTDYVAKIQRNAAPEAAKAAAKD--FIKQFYESAWGKQVI. 94
9 -37.0004adx_7 mol:protein length:126 RPL14E  ali model follow..  26  5.KFVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGE----HIVRQVIPIRRVHLTKFQIDVELNQRTVLLKKKIAKFDLTKKYAETSFAKKQAI 96
10 -36.8005lzs_M mol:protein length:218 Uncharacterized protein  ali model follow..  28  5.RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC--TRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIE. 96
11 -36.7003j7o_M mol:protein length:213 Ribosomal protein eL14  ali model follow..  28  5.RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC--TQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIE. 96
12 -36.6004d5y_M mol:protein length:215 60S RIBOSOMAL PROTEIN EL14  ali model follow..  26  5.RFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPC--TQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIE. 96
13 -29.2003j79_I mol:protein length:221 60S ribosomal protein eL6  ali model follow..  22  52.KSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVPLKRVDSRYLVVTSTNIFNFENIAKLKDDFLNYAQDIDDDSFIKTLEIKKK. 145
14 -28.6003jbs_A mol:protein length:176 eL6  ali model follow..  23  32.ASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEA....... 119
15 -28.1005apo_E mol:protein length:176 60S RIBOSOMAL PROTEIN EL6  ali model follow..  23  32.ASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXX....... 119
16 -27.2005xy3_E mol:protein length:151 60S ribosomal protein L6, putative  ali model follow..  20  54.ANLKVGTVVIIVGGEHQGKRAVVVADQGAGIVKVAGPV----VPVNEISQDYLIATSTSIDVAANATEAQVEAAAAKVPEMVDYLKAPFT..... 139
17 -26.0005t5h_v mol:protein length:171 60S ribosomal protein L6  ali model follow..  21  7.KSCKPGTIAIILAGRFRGRRVVILKQLPRNPLVISGPMKYNGVPIRRIDSRYIIATSTKVDIKNVDVSGITPDIFKRPKQEKRVKSEG....... 95
18 -25.9005t2a_t mol:protein length:195 eL6  ali model follow..  21  31.KSCAPGAIAIILAGRFRGRRAVILKQLPHNPLVVSGPMKYNGVPIRRIDSRYVIATSTTVDISSVDTASITAEVFQRPKAEKPTKSEG....... 119
19 -25.6003j7o_E mol:protein length:236 Ribosomal protein eL6  ali model follow..  21  90.ASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQE....... 177
20 -25.6003jcs_F mol:protein length:195 ribosomal protein L6e  ali model follow..  22  31.KSCAPGVIAIILAGRFRGRRAVILKQLPHNPLVVSGPMKYNGVPIRRIDSRYVIATSTKVDISSVDTAPITPEVFQRPKAEKLTKSE........ 118
21 -24.8005lzs_E mol:protein length:291 60S ribosomal protein L6  ali model follow..  22  145.ASITPGTILIILTGRHRGKRVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQE....... 232
22 -24.7005xxb_E mol:protein length:193 Ribosomal protein eL6  ali model follow..  23  38.SSITPGTVLILLSGGHRGKRVVFLKQLAPSLLLVTGPFKVNGVPLRRVNQRYVIATTTKVDISGVDVSSIKDEQFGASKKEKFAERKLRKKQ... 130
23 -24.4003j92_E mol:protein length:284 eL6  ali model follow..  21  138.ASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKKKLRKPRHQE....... 225
24 -24.4004d5y_E mol:protein length:288 60S RIBOSOMAL PROTEIN EL6  ali model follow..  22  142.ASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQE....... 229
25 -20.2005t5h_a mol:protein length:132 Ribosomal protein L27  ali model follow..  22  1.KFLKPGKVVIVTSGRYAGKKAVIVQNTDSKHSLIAG-QRRSRVGVRVVNHKHFLPTRYNMDLSRELRGRINVSDASKKAKSKQLVRKLFQAR... 117
26 -19.8003jcs_Y mol:protein length:134 ribosomal protein L27e  ali model follow..  22  3.KFLKPGKVVIVTAGRYAGHKAVIVQNSDIARALLAG-ARRSQVGVRVVNHKHFLPTRYNVDMSKELRGKINVSDASKRSRSKRLVRHVFQAR... 119
27 -19.7005xy3_Z mol:protein length:139 Ribosomal protein L27e, putative  ali model follow..  22  1MSLLQAGRFVVMLQGRHAGKKAVVLAAYPEGYAIVMGIEKYPKK--KAVNFNHVMLTRHNVKDFKKISVEKVVAALKDAPAKKALLTEYAAV.... 120
28 -19.1005xxb_Y mol:protein length:146 Ribosomal protein eL27  ali model follow..  23  3.KLLKSGRVVVVLNGRHAGKKGVVVNTWEGAFCLVAGIEKAP----KYINVNHLMPTRYTVSSDMDVKTMVPEDAMRTVDDRKAAKKGLKKI.... 117
29 -19.0003j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  24  3.KLLKPGKVIIILNGRRAGKKAVIVNTYEGQYCLVAG-VKRSKVKAKCINVNHILPTRYQVANDFDIKSLASDDVLKSKNKKKEVKKLGK...... 116
30 -18.2003jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  29  3.KFLKAGKVAVVVRGRYAGKKVVIVKPHDEGHALVAG-AKRTKIKPKVVNYNHLLPTRYTLDVKSVVSTETFEQPSQREEAKKVVKKAFEERHQA. 124
31 -18.2003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  27  3.KFMKPGKVVLVLAGRYSGRKAVIVKNIDDGHALVAG-AKRSKIKSKVYNYNHLMPTRYSVDIKTVVNKDVFRDPALKRKARREAKVKFEER.... 121
32 -9.6705v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  29  3...VHKGDTVLVISGKDKGAKGKVLQAYDRNRVLVEG........................................................... 37
33 -9.6503j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  17  5...IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGI.......................................................... 39
34 -9.5905o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  8  3...VHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTAVSANERGASSGGIVTQEAPIHVSNVM....................... 72
35 -9.4203j7y_V mol:protein length:216 uL24  ali model follow..  16  56...LFCGDTVEILEGKDAGKQGKVVQVIQRNWVVVGGLNTHYRYIGKTMDYRGLLHRQVKLVDPMDRKPTEIEWRFTEAGERVRVSTRS....... 150
36 -9.3604wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  20  3...IKKGDNVKVIAGKDKGKEGKVIATLKKDRVVVEG........................................................... 37
37 -9.2903j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  23  3...VKKGDKVMVISGKDKGKQGTILAAFKKDRVLVEG........................................................... 37
38 -9.1104ce4_Y mol:protein length:216 MRPL24  ali model follow..  17  56...LFCGDKVEILEGKDAGKQGKVVQVIQRNWVVVEGLNTHYRYVGKTVDYR-LLHNQVKLVDPTDRKPTDVEWRFTEAGERVRVSTRS....... 150
39 -9.0804v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  17  7...VKKGDTVLVASGKYKGRVGKVKEVLKKYAVIVEG........................................................... 41
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.