current user: public
If you have questions about the server, please let us know.

Query: 2jug_A mol:protein length:78 TubC protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst GPLGSSAGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGARHELIALLRQLQPSSQGGSLLAPVARNGRLLast
1 -40.9002jug_A mol:protein length:78 TubC protein  ali model  100  1GPLGSSAGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGARHELIALLRQLQPSSQGGSLLAPVARNGRL 78
2 -7.7202gm5_A mol:protein length:139 Transposon gamma-delta resolvase  ali model follow..  16  69GRDTADMIQLIKEFDAQGVSIRFIDDGISTDSYIGKMVVTILSAVAQAERQRI......................... 121
3 -7.1901u8v_A mol:protein length:490 Gamma-aminobutyrate metabolism dehydratase/isomerase  ali model follow..  9  1..MLMTAEQYIESLRKLNTRVYMFGEKIEIRPSINCVRMTYELAQDPQYADLMTTKSNLIGKTINRFANLHQSTDD.. 81
4 -7.0604ufq_A mol:protein length:217 Hyaluronidase  ali model follow..  27  192.................GGALYASGGALLWRGSNGTVTT....................................... 213
5 -6.9001gdt_A mol:protein length:183 PROTEIN (GAMMA DELTA RESOLVASE)  ali model follow..  16  70GRDTADMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRI......................... 122
6 -6.8402gm4_A mol:protein length:183 Transposon gamma-delta resolvase  ali model follow..  16  70GRDTADMIQLIKEFDAQGVSIRFIDDSIDTSSAMGRMVVTILSAVAQAERQRI......................... 122
7 -6.8105cy1_A mol:protein length:192 Transposon Tn3 resolvase  ali model follow..  16  70GRDTADMIQLIKEFDAQGVAVRFIDDGISTDGDMGQMVVTILSAVAQAERRRI......................... 122
8 -6.7703uj3_X mol:protein length:193 DNA-invertase  ali model follow..  16  67GRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGRFFFHVMGALAEVERELII........................ 120
9 -6.7704c7m_A mol:protein length:134 TIR DOMAIN-CONTAINING PROTEIN  ali model follow..  12  18......VQDLVAALRDLGAKIFYDAYTLKV----DSLRRKIDQGLANSKFGIVVLSEHFFSKQ............... 71
10 -6.7504m6f_A mol:protein length:193 DNA-invertase  ali model follow..  16  67GRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGRFFFHVMGALAEVERELII........................ 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 2 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.