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Query: 2jvm_A mol:protein length:80 Uncharacterized protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESFAAAKLELast
1 -43.1002jvm_A mol:protein length:80 Uncharacterized protein  ali model  100  1MRRQPKTRQESARMSIEAPETVVVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESFAAAKLE 74
2 -35.7005o31_R mol:protein length:96 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  34  30.GRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHH...... 96
3 -35.4005xtb_T mol:protein length:95 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  35  29VGRQKEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFRQHH....... 95
4 -35.3005lnk_b mol:protein length:96 Mitochondrial complex I, 13 kDa subunit  ali model follow..  33  29VGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHH...... 96
5 -34.9002jrr_A mol:protein length:67 Uncharacterized protein  ali model follow..  61  2..............TIQAPETKIVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSKADALE 61
6 -33.7006g2j_R mol:protein length:116 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  33  49VDRQKEVNENFAIDLIAQQPVNEVEHRIIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFKQHHH...... 116
7 -33.2002jz8_A mol:protein length:87 Uncharacterized protein BH09830  ali model follow..  13  2.....ADYNIPHFQNDLGYKIIEIGVKEFMCVGATQPFDHPHIFIDMG-STDEKICPYCSTLYRYDPSLSYNQT 69
8 -33.0006gcs_M mol:protein length:136 NUMM SUBUNIT  ali model follow..  26  67KDLSKQPMPYAGIELIAQQPVRFVHGNTAVCDGGPGAQGHPKIFINVD-APGSHACQYCGTRYEKEH....... 136
9 -31.6005gpn_x mol:protein length:123 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial  ali model follow..  34  57.DRQKEVNENFAIDLIAEQPVSEVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQPHH...... 123
10 -12.0002y69_F mol:protein length:129 CYTOCHROME C OXIDASE SUBUNIT 5B  ali model follow..  20  85........................NKRIVGCICEED--NSTVIWFWL-HKGEAQRCPSCGTHYKLVPHQLAH.. 129
11 -11.4002odx_A mol:protein length:80 Cytochrome c oxidase polypeptide IV  ali model follow..  15  6FDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSPAG-SHTIMWLKP-TVNEVARCWECGSVYKLNPVGVPNDD 77
12 -10.1004njg_A mol:protein length:230 7-carboxy-7-deazaguanine synthase  ali model follow..  15  1.....MGSSSSGLVPRGSHMTYAVKEIFYTLQGEGANAGRPAVFCRFAG---NLWSGREEDRAQAV........ 59
13 -9.5005tgs_A mol:protein length:263 7-carboxy-7-deazaguanine synthase  ali model follow..  14  1..MGSSSSGLVPRGSHMAKGIPVLEIFGPTIQGEGMVIGQKTMFVRTAG---DYSCSWCDSAFTWDGSAKKDIR 70
14 -9.3401f2i_G mol:protein length:73 FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12  ali model follow..  14  27..............................CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH.. 68
15 -9.2402gqj_A mol:protein length:98 Zinc finger protein KIAA1196  ali model follow..  8  2.....SSGSSGPGGPEEQWQRAIHERGEAVCPTLVGLKKHME---VCQKLQDALKCQHCRKQFKSKAGLNYH.. 73
16 -9.1302ctd_A mol:protein length:96 Zinc finger protein 512  ali model follow..  14  10...RKEPPVYAAGSLEEQWYLEIVDKGSVSCPTIEGLKKHMENC-----KQEMFTCHHCGKQLRSLAGMKYH.. 81
17 -9.1002yww_A mol:protein length:149 Aspartate carbamoyltransferase regulatory chain  ali model follow..  10  70VDKISLISPDVTINIIRNGKVVEKLKPTLKCTNPNCITNKEKVFKIESKNPLKIRCYYCEKFLNEVI....... 147
18 -9.0802atc_B mol:protein length:152 ASPARTATE CARBAMOYLTRANSFERASE, REGULATORY CHAIN  ali model follow..  14  71VDELALYAPQATVNRINDYEVVGKSRPVLVCPDSNCISHAEPVFAVRRADDIALKCKYCEKEFSHNV....... 148
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.