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Query: 2m8r_A mol:protein length:109 Syntaxin-1A, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GSHMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIGGIFGLast
1 -51.1002m8r_A mol:protein length:109 Syntaxin-1A  ali model  100  1GSHMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIGGIFG 109
2 -41.3003c98_B mol:protein length:279 Syntaxin-1A  ali model follow..  97  187.IIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM..................... 273
3 -40.0001l4a_B mol:protein length:88 S-SYNTAXIN  ali model follow..  75  6GIIMETQQAKQTLADIEARHADIMKLETSIRELHDMFMDMAMLVESQGEMIDRIEYNVEAAVDYIETAKVDTKKAVKYQSKAR.......................... 88
4 -36.4001urq_B mol:protein length:75 SYNTAXIN 1A  ali model follow..  97  1.....GSHSKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS............................. 75
5 -36.3002xhe_B mol:protein length:279 SYNTAXIN1  ali model follow..  48  198.SGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR.......................... 279
6 -35.1002nps_B mol:protein length:71 Syntaxin 13  ali model follow..  40  2................SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK........................ 70
7 -34.1003b5n_B mol:protein length:69 Protein SSO1  ali model follow..  47  1...........ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR............................. 69
8 -32.7001n7s_B mol:protein length:68 Syntaxin 1A  ali model follow..  98  2..........SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK................................ 68
9 -32.7005buz_C mol:protein length:67 SNAP receptor-like protein  ali model follow..  37  2.............SLILEREEEIRNIEQGVSDLNVLFQQVAQLVAEQGEVLDTIERNVEAVGDDTRGADRELRAAARYQ.............................. 67
10 -32.2003j96_L mol:protein length:67 Syntaxin-1A  ali model follow..  100  2...........ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK................................ 67
11 -30.6001gl2_B mol:protein length:65 SYNTAXIN 7  ali model follow..  35  2.............SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN................................ 65
12 -29.6005m4y_A mol:protein length:210 Protein SSO2  ali model follow..  32  152.NANRRGEAKTALAEVQARHQELLKLEKTMAELTQLFNDMEELVIELTQLFNDMEELVIE................................................. 210
13 -27.6004wy4_B mol:protein length:58 Syntaxin-17  ali model follow..  36  1....................ESWETLEADLIELSQLVTDFSLLVNSQQEKIDSIADHVNSAAVNVEEGTKNLGKAAKY............................... 58
14 -22.4001fio_A mol:protein length:196 SSO1 PROTEIN  ali model follow..  41  150.NANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ.............................................................. 195
15 -14.0002nps_D mol:protein length:82 Syntaxin-6  ali model follow..  13  2...SHMASMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRRQ......................... 82
16 -13.6003zur_A mol:protein length:960 BOTULINUM NEUROTOXIN TYPE A, SYNAPTOSOMAL-ASSOCIATED PROTEIN  ali model follow..  16  438....GGSGGGGSGGGGSEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSGANSAL......................... 517
17 -13.1001l4a_D mol:protein length:87 S-SNAP25 fusion protein  ali model follow..  22  26................DDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK................................ 86
18 -13.0003j97_M mol:protein length:198 Synaptosomal-associated protein 25  ali model follow..  20  138................NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 195
19 -12.8006mdm_H mol:protein length:207 Synaptosomal-associated protein 25  ali model follow..  20  147................NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 204
20 -12.6001sfc_D mol:protein length:87 PROTEIN (SNAP-25B)  ali model follow..  19  25................NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG................................ 85
21 -11.6001gl2_D mol:protein length:65 SYNTAXIN 8  ali model follow..  15  2.............SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR................................ 65
22 -11.5003zus_A mol:protein length:927 BOTULINUM NEUROTOXIN TYPE A, SYNAPTOSOMAL-ASSOCIATED PROTEIN 23  ali model follow..  18  433................DEMEENLTQVGSILGNLKDMALNIGNEIDAQNRQIKRITDKADTNRDRIDIANARAKKLIDSANSA........................... 498
23 -11.4005ccg_D mol:protein length:65 Synaptosomal-associated protein 25  ali model follow..  19  1............MARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 62
24 -11.3005lob_E mol:protein length:96 Synaptosomal-associated protein 25  ali model follow..  20  37................NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 94
25 -11.3001urq_D mol:protein length:69 SYNAPTOSOMAL-ASSOCIATED PROTEIN 25  ali model follow..  20  2.........SHMASRENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 66
26 -11.2001n7s_D mol:protein length:66 SNAP-25A  ali model follow..  20  6................NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 63
27 -11.1001kil_D mol:protein length:66 SNAP-25 C-terminal SNARE motif  ali model follow..  20  6................NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK................................... 63
28 -11.1004wy4_D mol:protein length:65 Synaptosomal-associated protein 29  ali model follow..  17  7................QKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNIKSTERKVRQ................................... 64
29 -10.9003b5n_D mol:protein length:64 Protein transport protein SEC9  ali model follow..  10  6................LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG................................... 63
30 -9.7902kog_A mol:protein length:119 Vesicle-associated membrane protein 2  ali model follow..  15  30.................TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ---AGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFS 118
31 -9.5605lob_D mol:protein length:100 Synaptosomal-associated protein 25  ali model follow..  17  29....LEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD................................... 98
32 -9.2703efg_A mol:protein length:78 Protein slyX homolog  ali model follow..  7  10................QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK.......................................... 60
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.