current user: public
If you have questions about the server, please let us know.

Query: 2mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst ENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKEFDDTGLTLGDVVNIKEGKKLELast
1 -49.4002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model  100  1ENAELEIVTDYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLKPTISQARQLEKILGIKLVTPLENNEESEKEFDDTGLTLGDVVNIKEGKKLE 100
2 -38.7001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  20  6..SGDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEKGPRAKSGPSSG............ 91
3 -35.2001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  19  3.......TQLMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLSQTN...................... 73
4 -34.4002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  14  1........MELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDRIIVNKLE..................... 71
5 -33.0002jvl_A mol:protein length:107 TrMBF1  ali model follow..  17  30.....TVGKEVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPRLGPKKK................... 107
6 -33.0002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  10  3...KDKQKAIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLNIDTVPIESGYTLE........... 88
7 -33.0003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  17  8.......QQMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKIK......................... 75
8 -32.8003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  20  15.......QSNAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLGNEYEN....................... 84
9 -32.3003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  16  1.SNAMTIQHQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQEDKVWNDLSLKQWLLSLNLRSEEEIA 99
10 -32.0002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  18  3SFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQN................. 85
11 -31.7003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  10  7........RKIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVSTKR......................... 73
12 -31.7005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  16  9.......PQNMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENLPFIYLLLHFYIEGQITDRQLADLRGKIRE...................... 80
13 -31.3005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  18  6SFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDTKNASPESTEQQD................. 88
14 -30.5002xiu_A mol:protein length:66 CYLR2  ali model follow..  27  2..........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQWQPE......................... 66
15 -30.5001utx_A mol:protein length:66 CYLR2  ali model follow..  27  2..........IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE......................... 66
16 -29.9003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  26  2..........LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGKHAPDFEMANRLAKVLKIPVSYLYTPEDDLAQ...................... 73
17 -29.8004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  18  3..QKIYSPTQLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK............................ 72
18 -29.8002l49_A mol:protein length:99 C protein  ali model follow..  20  1......MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLW.............................. 64
19 -29.4004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  22  2..........LGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYERERHSPNMRTSEQLAMVLQVPMAYLYCPEDELAE...................... 73
20 -28.9001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  20  9TQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEA................. 91
21 -28.7002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  16  2..........IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDKMLNPVEDYELTLKIEIVKERGANLLS 91
22 -28.5003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  14  3KKEDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTKRRQL............... 87
23 -28.4004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  18  23..TAAALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKVQLDIMIAILMALDLTEQIDLFIPKQE.......................... 94
24 -28.3005a7l_A mol:protein length:80 CI  ali model follow..  15  1......MQTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLMGFDVPM........................ 79
25 -28.1001sq8_A mol:protein length:64 dh434  ali model follow..  28  1........MLMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKA-KRPRFLPELARALGVAVDWLLNGA........................... 64
26 -28.1001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  16  1.......MQTLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVT-KRPRFLFEIAMALNCDPVWLQYGTKRGKAA..................... 71
27 -28.1001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  25  2..........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE....................... 69
28 -28.0003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  20  13SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD................... 93
29 -27.9001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  26  1.........SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGTSDSNVR..................... 69
30 -27.8004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  20  2SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD................... 82
31 -27.8003fya_A mol:protein length:99 Regulatory protein  ali model follow..  20  13SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD................... 93
32 -27.7002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  19  11..........LVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPMD............................. 71
33 -27.6004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  20  2SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD................... 82
34 -27.5004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  20  2SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSANLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD................... 82
35 -27.4004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  20  2SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKALELIMKGLEVSDVVFFEMLIKEILKHD................... 82
36 -27.4004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  20  2SHMESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNSRNLTIKSLELIMKGLEVSDVVFFEMLIKEILKHD................... 82
37 -27.3003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  20  3TQEQLEDARRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPS............................ 74
38 -27.2002b5a_A mol:protein length:77 C.BclI  ali model follow..  24  3..NEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKMEEEN....................... 77
39 -27.2002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model follow..  25  1.........SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGT........................... 63
40 -27.1003zhi_A mol:protein length:83 CI  ali model follow..  17  3.......KTDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQSPDQNRIYLLAKTLGVSEAWLM.............................. 74
41 -27.1001y7y_A mol:protein length:74 C.AhdI  ali model follow..  17  4HHDHYADLVKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF.............................. 73
42 -27.0003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  18  13.PDEQDLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMTNSA................ 95
43 -26.8003zhm_A mol:protein length:79 CI  ali model follow..  17  2........TDTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQSPDQNRIYLLAKTLGVSEAWLM.............................. 72
44 -26.7001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  21  8TQEQLEDARRLKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEA................. 90
45 -26.5003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  16  55..ADKIALKAGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAFERRYEYMEQA................. 135
46 -26.2005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  22  18........QIMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQNCCDIQLAHRICDTLGISHEYANELTSIPLR...................... 87
47 -26.1003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  18  15..........LLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKLEAMTPS..................... 83
48 -26.0003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  16  19KAPEPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGSMA...................... 96
49 -25.8005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  15  2.AMTALLREVIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGRKEASSELLSAICDALDVPLSRVLTDAGESMAR..................... 79
50 -25.7002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  19  2...SSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL.............................. 70
51 -25.6002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  18  7TAEELERGQRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRITPAFFTIAAVARVLDLSLDDVAA............................. 76
52 -25.5004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  22  41.......QQSLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGED-VYISTVFKILDGLGIDIVSAQTSDTETNG...................... 110
53 -25.4001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  18  2SLTDVMFKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLLSS..................... 80
54 -25.0003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  25  5..........IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNQTNPSIQFLEKVSAVLDVSVHTLLDEKHETE....................... 72
55 -24.7001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  19  2.SNTKTASTGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGETLTQLGRIAHVLGTSIGALTPPAGNDLDD..................... 80
56 -24.7003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  16  15..........LCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGL................................... 69
57 -24.0004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  12  12........ETLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQHPLPEQAARVVAEKLDLDEDAIRLLQTIPLR...................... 81
58 -23.9006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  12  6DFKPDSYLIRSGNNFLGILNDIKRRPEDAANELGVSIEEINSIISGKQKISPSLIEKAVNIWPVNERDFYIVSDDCSSG..................... 84
59 -23.8002qfc_A mol:protein length:293 PlcR protein  ali model follow..  25  2......QAEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIE..................... 73
60 -23.5001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  17  12........LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILL............................. 74
61 -22.7006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  12  236........GDHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPARAEWPELSALAEALGVSVRELLVPHTTTEAD..................... 306
62 -22.6005fd4_A mol:protein length:324 ComR  ali model follow..  17  23........KEFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLKFDVLRTPTYGNEDLAE 115
63 -22.5005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  20  1....MNLKDSIGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESLPSLDRLSYIAKRLGKSMTELLDQDNITIPD..................... 76
64 -21.6004yv6_A mol:protein length:284 Transcriptional regulator  ali model follow..  19  1......MDKELGKTLRRLRQGKQVSISSLADEH-LSKSQISRFERGESEISCSRLLNLLDKLNITIDEFVSTHSKTHTHFFTLLSRVRKYYAEKNVAKLL 93
65 -21.6003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  20  8TQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIAREIYEMYEA................. 90
66 -21.4002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  16  5.......ISDIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKYNGDNERVSQTLQRW...................................... 59
67 -21.4003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  18  3.....TDGEFVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKPTITTIRKVCGTLGISVHDFFDFPPYNEVE..................... 77
68 -20.9003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  9  4.......MRIDPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDENEPDPAAATALAEALSVEPSQLAADAHRNLT...................... 75
69 -20.7001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  6  5...........ALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPISPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMR.............. 81
70 -20.7002ppx_A mol:protein length:99 Uncharacterized protein Atu1735  ali model follow..  18  32...........MPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLK......................................... 79
71 -20.5002aw6_A mol:protein length:317 PrgX  ali model follow..  16  1.......MFKIGSVLKQIRQELNYHQIDLYSGI-MSKSVYIKVEADSRPISVEELSKFSERLGVNFFEIL.............................. 62
72 -20.5005j9i_A mol:protein length:104 Antitoxin igA-2  ali model follow..  25  42...........PDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNGQAVTLLK......................................... 89
73 -20.4004yba_A mol:protein length:99 Regulatory protein C  ali model follow..  23  11...........PEICKASRALVNLTQKELALMAGIATPTIADFERGARKPHGNNLRSIIIAFE..................................... 62
74 -20.1004ryk_A mol:protein length:306 Lmo0325 protein  ali model follow..  22  1.......MGSYGELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF.............................. 62
75 -19.4003fmy_A mol:protein length:73 HTH-type transcriptional regulator MQSA (ygiT/b3021)  ali model follow..  22  13...........PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLR......................................... 60
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24.