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Query: 2o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ADVLNISKIPIFSKKEKKFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMDLLast
1 -107.0002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model  100  1ADVLNISKIPIFSKKEKKFSDLQKSKEANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEIDLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQVKITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKERMNLFHAIENIPAVKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGSPKIFHAKNPFNWMDL 311
2 -96.3002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  54  2.SSGVDLGTENLYFQSMSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFME. 311
3 -93.4003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  58  2.........................GVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEAVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFM.. 286
4 -93.2002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  90  2AEVVNISKSASFSKQEKEFSDFQKSKESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEIDLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVLENLASKFLREVEIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKERLNLFHAIENIPAIKNKALWAAKWINDTNSFAERIVANACVEGILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVEVERSFICESLPCDLIGMNSRLMSQYIEFVADRLLECLGCSKVFHSKNPFNWMD. 311
5 -91.3001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  38  1.....MEAHNQFLKTFQKERHDMKEAEKDEILLMENSRRFVMFPIKYHEIWAAYKKVEASFWTAEEIELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVNKYLIENFSAQLQNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIPLFKEIANLPEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVEIEKEYYSNSLPVEKFGMDLKSIHTYIEFVADGLLQGFGNEKYYNAVNPFEFME. 305
6 -89.7002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  58  1.................SMTKAAAPGVEDEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFLFNAIETMPCVKKKADWALRWIGDEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFME. 294
7 -89.6003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  53  3DPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFME. 313
8 -87.5001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  15  2...........................TGNAKLIDRVSAINWNRLQDEKDAEVWDRLTGNFWLPEKVPVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQGTVGAVSLIPDALTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEI-DDAFRWSEENRNLQRKAEIVLQSYR-GDEPLKRKVASTLLESFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDDYTYELLFELYDNEVEYTQDLYDE---VGLTEDVKKFLRYNANKALMNLGYEALFPRTDVNPAIL. 288
9 -84.5001pfr_A mol:protein length:340 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  20  1..............AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVAFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDQECYDLFVQAAQQEKDWADYLFRDSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTSNPIPWIN. 336
10 -84.3004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  24  4SSSGLVPRGSHMQADILDGKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYHTKNPFPWMS. 333
11 -83.7001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  54  44..ASKAARRIFQDSAELESKAPTNPSVEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREYLFNAIETMPCVKKKADWALRIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVRIEQEFLTEALPVKLIGMNCTLMKQYIEFVADRLMLELGFNKIFRVENPFDFME. 352
12 -82.4006ebo_A mol:protein length:355 Ribonucleoside-diphosphate reductase, beta subunit  ali model follow..  15  2..GSSSSGLVPRGSTKNYYDRSVSPVEYAYFDQSQNMRAINWNKIVDEKDLEVWNRVTQNFWLPENIPVSNDLPSWNELDDDWQQLITRTFTGLTLLDTVQSSIGDVAQIKNSLTEQEQVIYANFAFMVGVHARSYGTIFSTLCTSEQI-EEAHEWVVDNEALQARPKALIPFYTADD-PLKSKIAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNFYSGYKYQLKVAKLSPQFVFDLLDKMIGLEKTYLHQLYDG---FGLADEAIRFSLYNAGKFLQNLGYESPFTKEAPEVFAQL 316
13 -82.0001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  53  63..SKDAENHKAYLKSHQVHRHKLKEMEKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEEIDLSKDIHDWNNMNENERFFISRVLAFFAASDGIVNENLVENFSTEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFLFNAIHTIPEIGEKAEWALRWIQDDALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVEIEQRYFLDALPVALLGMNADLMNQYVEFVADRLLVAFGNKKYYKVENPFDFME. 372
14 -82.0002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  20  2..........MEQLQKRKIYDTTASNASTGILNGKSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEINMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMR-AAEYLTDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQ-DEIFEYWKHDDVLKERNEFIIDDNPTPKTFLESIVYDVILEGLNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPETFVKTTLMKAADLEKDWFRYIIGDKIPGINPEDMETYISFIANKRAVQLGMEKPYPEINPMKWIR. 314
15 -81.2003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  16  1...............................MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTK-DVDAAYAWSEENAPLQRKAQIIQQHYR-GDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLSFAFDLLLELYDNELQYTDELYAE---TPWADDVKAFLCYNANKALMNLGYEPLFPAENPAILAA. 285
16 -81.1006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  15  2......HMASMAKIKNQYYNESVSPIEYAQQGFKGKMRSVNWNVVNDEKDLEVWNRITQNFWLPEKIPVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQATVGDVAQVPNSLTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQI-EEAHEWVINTETLQERAKALIPYYVNDD-PLKSKVAAALMPGFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEFVFKLLYELIDLEKAYLKELYED---FGLADDAIRFSVYNAGKFLQNLGYDSPFTEEEPEIFTQL 312
17 -81.0001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  17  2......................SNEYDEYIANHTDPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKIPVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQI-NEAFRWSEENENLQRKAKIIMSYYN-GDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAYTFDLMYDLYENEIEYTEDIYDD---LGWTEDVKRFLRYNANKALNNLGYEGLFPTDET...... 286
18 -80.5004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  19  1................................MQTYYKAINWNAIEDVIDKSTWEKLTEQFWLDTRIPLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQSESGVDALRKDVRTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEI-DEIFAWTNTNPYLQKKAEIINEIYL-NGTALEKKIASVFLETFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEEWMYDLLYTLYENEEGYTESLYDT---VGWTEEVKTFLRYNANKALMNLGQDPLFPDDDVNPIV.. 281
19 -79.8001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  16  1...............................MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEV-DAAYAWSEENPPLQRKAQIILAHYV-SDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSALFALDLLMELYDNEIRYTEALYAE---TGWVNDVKAFLCYNANKALMNLGYEALFPPENPAILAA. 285
20 -79.5001pj0_A mol:protein length:375 Ribonucleoside-diphosphate reductase 1 beta chain  ali model follow..  20  1..............AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFFRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLESIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQITHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDQECYDLFVQAAQQEKDWADYLFRDSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRNPIPWIN. 336
21 -79.3001mrr_A mol:protein length:375 RIBONUCLEOTIDE REDUCTASE R1 PROTEIN  ali model follow..  21  1..............AYTTFSATKNDQLKEPMFFGQPVQVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQITHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDQECYDLFVQAAQQEKDWADYLFRDSMIGLNKDILCQYVEYITNIRMQAVGLDLPFNTRNPIPWIN. 336
22 -79.2001biq_A mol:protein length:375 PROTEIN R2 OF RIBONUCLEOTIDE REDUCTASE  ali model follow..  19  1..............AYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSFTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDERELKKKLYLCLMSVNALEAIRYYVSFACSFAFAERELMEGNAKIIRLIARDAALHLTGTQHMLNLLRSGADKQECYDLFVQAAQQEKDWADYLFRDSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTSNPIPWIN. 336
23 -78.9004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  21  1....................................MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFDWVDNKAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAKETQELLMELYEIEMAYTEEIYTS---IGLVEDVNRFVRYNANKGLMNLGLEPKFEEEEINP.... 281
24 -77.0004dr0_A mol:protein length:350 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  21  3...................SSSSGLVPRGSHMMTKIYDAANWSKHEDDFTQMFYNQNVKQFWLPEEIALNGDLLTWKYLGKNEQDTYMKVLAGLTLLDTEQGNTGMPIVAEHVDGHQRKAVLNFMAMMENAVHAKSYSNIFMTLAPTETINEVFEWVKQNKYLQKKAQMIVGQKDDEISLFKAMVASVYLESFLFYSGFYYPLYFYGQGKLMQSGEIINLILRDEAIHGVYVGLLAQEIYNKQTEEFAIDLLNQLYENELEYTEDLYDQ---VGLSHDVKKFIRYNANKALMNLGFDPYFEEEDINPIV.. 301
25 -73.0006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  18  1..................MGSSSSGLVPRGSHMSIFDKRVNYKPFEYPEVLQFTEAINKAYWVHTEVDFTADTQDFHALSLAEKTAVKNSLLAIAQIEVAVKSFWGN-IYEHFPKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDEEKLLDVPVIRRRVDYLSNVLKDTKSQDNRKYMVSLILFSILIENVSLFSQFAILLSFRFKGYMKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDALVRETVKDSIAVESDILDWIFEEEIESIKKGDLVNFMKFRIDESLKQINIPVIFDVKVALAWFE. 306
26 -71.0004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  15  2......................AVDDDDKMVHHDGFQTVKATIDWEHPMFKLYEKAKRNGKWNPADIDFSQDQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMALARQGRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLSVFHNDHYKYEALPEAMNRLYADDSPEAVIRAATVYNMIVEGTLAESGYYTFRQIKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERELFIRYMDELWPHVIGYVDYLTETYALEIDYDLLRHYVIKQFNLRKKQISRTKRVDVVEGLEKTA. 307
27 -69.6003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  14  1..............................MAGMTRTRSGSLAAGGLNWPLKLFAGGNAKFWHPADIDFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMMRAEGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLHRYLDDLPAYRQIFYAELNALSADPSPAAQVRASVTYNHIVEGMLALTGYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDATRMNELIPLALRLIEEGFALYGDQPPFDLSKDDFLQYSTDKGMRRFGTISNARGRPVASPAQLED. 302
28 -63.3005olk_A mol:protein length:430 Ribonucleoside-diphosphate reductase, beta subunit 1  ali model follow..  18  76.DMVEDKLMSSEFHDVAKAYIIYRNKRALERKTNIFEKRINLKPYEYPELNEYVAAIRHSYWIHTEFNFTSDIQDFKTGLSEVERSAIKNTMLAISQIEVAVKTFWGDVHHRLPKPEIAAVGATFAESEVRHHDAYSHLLEILGLNEEKELKKKPVIMKRVHYLETSLKHAKSDDDREYTESILLFALFIEHVSLFSQFLIIMAFKHKNMLKGISNAVEATSKEEQIHGDFGVDIINIIKKENPENLIKEMCLNSFEAESKVVDWIFEKELDFLPKAVINEFLKNRFNKSLEAIGLEKLFDIDEATEWFD. 398
29 -48.3005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  12  2.......................................................................D-KNWFSTPQEIREGIKYLSAHFYPASIMDRWKILKKL-SFEKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPLTTVRLPPSYIKLFD--------GLVEDFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR--VEELFPLAVQIVKEGKDKIEP---LGYSIQELVNLMEELKKARINKI................. 209
30 -35.6005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  10  1........................................................................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARR---IPADRDELQRLGRMEGDHASAFVGCGRNLGVVADL-------PLARRLFQPLHDLFKRHDHDGNRAECLVIQGLIVECFAVA-----AYRHYLPVADAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTLAMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEA............. 211
31 -33.1005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  9  3...................................................................QLTDQSKELDFKSETYKDAYSRINAIVIEGEQEAHENYITLAQLL---PESHDELIRLSKMESRHKKGFEACGRNLAVTPDL-------QFAKEFFSGLHQNFQTAAAEGKVVTCLLIQSLIIECFAIA-----AYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNLPIVWKMLNQVEGDAHTMAMEKDALVEDFMIQYGEALSNIGFST............. 218
32 -32.8004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  10  1..................................................................MPELAVRTEFDYSSEIYKDAYSRINAIVIEGEQEAYSNYLQMAEL---LPEDKEELTRLAKMENRHKKGFQACGNNLQVNPDMP-------YAQEFFAGLHGNFQHAFSEGKVVTCLLIQALIIEAFAIA-----AYNIYIPVADDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENLPLVWKMLNQVQGDAKVLGMEKEALVEDFMISYGEALSNIGFST............. 217
33 -31.8005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  9  1..................................................................MNRTAPSAALDYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEM---LPDHAEALKKLAAMENRHFKGFQSCARNLEVTPDDP-------FARAYFEQLDGNFQQAAAEGDLTTCMVIQALIIECFAIA-----AYNVYIPVADAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNLPIVWRMLNAVEADTEVLQMDKEAIVEDFMIAYGEALGDIGFSM............. 218
34 -31.7004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  9  2.........................................................MPTLEMPVAAVLDSSEALPDFTSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLL---PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMD-------FAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAIS-----AYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMLDQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNT............. 231
35 -31.6004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  9  1..................................................................MPQLEASLELDFQSESYKDAYSRINAIVIEGEQEAFDNYNRLAEM---LPDQRDELHKLAKMEQRHMKGFMACGKNLSVTPDM-------GFAQKFFERLHENFKAAAAEGKVVTCLLIQSLIIECFAIA-----AYNIYIPVADAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNLPLVWLMLNEVADDARELGMERESLVEDFMIAYGEALENIGFTT............. 217
36 -30.1004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  9  14.................................................................DSTVGSSEALPDFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTL---LPDHVEELKRLAKMEMRHKKGFTACGKNLGVKADMD-------FAREFFAPLRDNFQTALGQGKTPTCLLIQALLIEAFAIS-----AYHTYIPVSDPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENLPLIRRMADQVAGDAAVLQMDKEDLIEDFLIAYQESLTEIGFNT............. 231
37 -29.4002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  7  63..................................TAIRMEDWCAVSDPRYYGAYVGNRAKMQESAEFGFCEKRNLLTRLSEETQKQLLRLLVPLRHVELGANMNNAK-IAGDATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKAYWMDDEMWQPMRKLVEDTVVDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETN--RELLQKWIDHWEPQAYEALKPLAEASVGIDGLNEARAELSARLKKFELQS............. 328
38 -28.6005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  8  24...............................................................SEFMPQLEASPTIDFQTETYKDAYSRINAIVIEGEQEAHDNYLTLAELL---ADKKAELVGLSKMENRHMKGFQACGRNLKVTPDM-------AFAKQFFSELHKNFQTAAAQGQIVTCLLIQSLIIECFAIA-----AYNIYIPVADDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADDARVLGMEKDALIEDFMIAYGEALGNIGFNN............. 243
39 -28.1005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  11  24...............................................................SEFMPQLEATAAIDYQSETYKDAYSRINAIVIEGEDEAANNYVRLAEL---MPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMD-------FAKKFFSDLHGNFQVAAAAGNIVTCLLIQALIIEAFAIS-----AYNVYIPHADDFARKITENVVKDEYLHLNFGEQWLKANFESAKDE-LERANRENLAIVWRMLDEVAGDLVLGMEKEALMEDFTIAYQEALQNIGFST............. 243
40 -25.5003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  14  29..............................................FPERMSGHMGIPLEKWESYDKAALERAKIYENSDPGWISTLKSHYGAIAVGEYAAVTGEGR-MARFSKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAYHSNEWAAIAAKHFFDDITGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLTGPVMDYYTKEFMYEWIIGQFERSLIDLGLDKP-VTPEERDWLE. 359
41 -25.4004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  10  2.....................................................................MQKLRSVKEVPQDLTNTLVNIIELRADFELAMVEQYSPWLVN-APTVDSRLFVAKLVSDELNHGWQLVRLLEEFKVKDVIE--------RISNARLGIHKLEVSNLPLFNWEDVIAFTFLVDGAG-----LYQLKILKDCSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRMQGAINAVEMLHMTWSLNETHLRDLNISDLTKNDLINGYIKTTNEELKKCGYN-------V...... 222
42 -25.4003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  10  2.......................................................RSTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWI-TRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQ--------KMLDGRMKYSSIFNYPTLSWADIGVIGWLVDGAA-----IVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQMLQDAINRFWWPALMMFARSLTWKIKRFTNDELRQRFVDNTVPQVEMLGMT.............. 241
43 -24.6004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  9  14................................................................QRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIVGMLPEGNWI-TRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDL--------YQKMLDGQMKYSSIFNYPTLSWADIGVIGWLVDGAA-----IVNQVALCRTSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQMLQDAINRFWWPALMMFARSMAWKIKLHSNDELRQRFVDNTVPQVEILGMT.............. 244
44 -23.0001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  11  2AISLATKAATNRAPVGVEPQEVHKWLQSFNWDFKENRTKYPTKYHMANETKEQFKVIAKEYARMEA-DGLTRLGAGNKVHPRWGETMKVISNFLEVGE-YNAIAASAMLWDSATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKDPAGHNDARRTRAIGPLWKGMKRVFADGFISGDAVECSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKFLNYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESP-PDEEDQAWFE. 368
45 -22.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  10  1................................MAQKPVADALTLELEPVVEANMTRHLDTEWFAHDY--FLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHFILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANED----------VRVQHVMKGYRAEKYTQVETLVYMAFYE----RCGAVFCRNLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADIEAYRDKLQNVADA-KPQLRQLISDRITAWGLAGEPSLKQFV..... 273
46 -22.0001t0q_B mol:protein length:330 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  8  56.............................................TWYKKYCFDSPLKHDDWVQGLFDQLNDRGHDQMLTREWVETLARFYTPARYLFHALQMGSV-YIHQIAPASTITNCATYETADHLRWLTHTAYRTRELANCYPDVGFGKRERDNDPAWQGFRELIEKALIAWDWGEAFTAINLVTKPAVEEALLQQLGSLAQSEGDTLLGLLAQAQKRDAERHRRWSSALVKMALEKEGNEVLQKWVAKWEPLADKAIEAYCS---ALPDGENAIVEAKSASRYVRQMMGL............... 330
47 -22.0001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  13  28.............................................LFPEEMSGARGISMEAWEKYDKAALERDGFVDRADPGWVSTMQLHFGAIALEEYAAST-AEARMARFAKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIHTNEWAAIAARSFFDDMMTRDSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLTGESRNQSFKEFMLEWIVAQFERQLLDLGLDKP-VSPEEREWLE. 359
48 -21.2003dhg_B mol:protein length:327 toluene 4-monooxygenase hydroxylase beta subunit  ali model follow..  8  74..........................................DPDQLVYRTYNLMQDGQESYVQSLFDQFNEREHDQMVREGWEHTMARCYSPLRYLFHCLQMSSA-YVQQMAPASTISNCCILQTADSLRWLTHTAYRTHELSLTYPDAGLGEHEREKEPGWQGLRELMEKQLTAFDWGEAFVSLNLVVKPMIVESIFKPLQQQAWENNDTLLPLLIDSQLKDAERHSRWSKALVKHALENPDNAVIEGWIEKWRPLADRAAEAYLSMLSSDILPAQYLERSTSLRASILT................... 326
49 -20.4001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  9  8.KAATDALAANRAPTSVNAQEVHRWLQSFNWDFKNNRTKYATKYKMANETKEQFKLIAKEYARMEAQDALTRLNAGVRVHPKWNETMKVVSNFLEVGE-YNAIAATGMLWDSAQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKDPAGHNDARRTRTIGPLWKGMKRVFSDGFISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESP-PDQEEMEWFE. 373
50 -20.4002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  13  66..........................................................LVPDYPLEIVPFAEHPLFLAAEPHQRQRVLTGNERVIATEQLIAEPAFDLVMHGVDDPLIRKSVQQAIVDESFHTYMHMLAIDRT--RELRKISERPPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCI---NALLALLARDATIQPMHSLITTLHLRDETAHGSIVVEVVRELYARMNEQQRRALVRCLPIALEAFAEQDLS-----------------ALLLELNAAGIRG............. 292
51 -18.8005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  8  35..........................................................GRPDFREDMIPFRGHPIWERLSDETRSRLLAYNRNTVLIEQRIANPAFELVIGGAGGQQLELAVAQAMVDEQYHTLMHINGSAVT-RRMRRSDFSDRVLPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISI---NAYLDLLADDQEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGLEAFVAPDFT-----------------TWESIVAFEGVPG............. 262
52 -18.4002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  12  3.....................SKNKKLNLKDKYQYLTRDMAWEP-TYQDKKDIFPEIKITDWDPFRFDAFAQNNGHQNISDARVNALKLFISGISPLEHAAFQGYS-KVGRQFSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDG-PHMHDRVWYLSVPKSFFDDARSAGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDPIVQRWIDKWFWRGFRLLSLVNKVMSWSEAWEVYYEQNGGALFKDLERYGIRPPKYEKEEMDWMS. 362
53 -18.2003pvr_B mol:protein length:259 Phenylacetic acid degradation protein paaC  ali model follow..  9  1..............................................................................MGSSGSNQLTAYTLRLGDNCLVLSQRLGEWCGH-APELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTR-------ERQFSNLLLVEQPNGNFADTIARQYFIDAWH-----VALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVQKMQQAINKLWRFTAELFDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLN.............. 214
54 -17.7004iit_C mol:protein length:251 Phenylacetate-CoA oxygenase subunit PaaC  ali model follow..  10  2.................................................................................NNPNPVATYALRLGDNGLVLAQRLGAWCGH-APELEIDLALANIGLDLLGQARNFLSYAAELNGCGDEDTLAFGR-------ERQYSNLLLVEQPNGNFADTIARQFFIDVWH-----VALYSRLVNSRDAQLAAIAAKGLKEVRYHLRFSRGWLERLGNGTELRKMQQAVDNLWRFTGELFELSLVEQGIAVDPRELQAEWQSAVHTALLDSGLQ.............. 212
55 -17.6001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  11  1ASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLD-SPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMR---------QIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQE-RATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISM-VDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWI.. 356
56 -16.8003per_A mol:protein length:481 Benzoyl-CoA oxygenase component B  ali model follow..  7  10.NNVNLNENKTLQRALEQW---------QPSFLNWWDDMGPENSSNYDVYLRTAVSVDPKGWADFGYVKMHDQDVWQEVPGEYRSTLRRIIVTQGDTEPASVEQQRHLGLT-APSLYDLRNLFQVNVEEGRHLWAMVYLLHAHFGRDGREEGE-ALLERRSGDEDNPRILTAFNEKTPDWLSFFMFTFITDRDGKFQLASL-----AESAFDPLARTCKFMLTEEAHHLFVGESGIARVIQRTCEPTLQKYLNFHYSVTSDLYATYYTNGLKGRFEEEKIGDDHKLQNSEYEVMDVA.............. 341
57 -16.1002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model follow..  10  2..........................QVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCD-EPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMR---------KIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQE-RATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRK...................................................... 236
58 -15.0003sid_A mol:protein length:180 Symerythrin  ali model follow..  10  2...........................................................................GLNYNQEDFM-TDANAASSIEVEMYECDCMYPTFAEIARRPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVSTIESQID-----AVASDSRGLRRALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLE...................................................................... 178
59 -12.6004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  12  1..................................................................MVFHKKEPIHVVNIGEANPRFAQLLLEQFGGAELSAALQYWVQSFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFAVRGMSQGNAWTASYLNEGGDVVRDLRANIAAE----AGARQTYEELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGKL..................................................................... 180
60 -11.9002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  11  17..................................................................................ADFSLEELLGMAIKAEI--AREFYKSLAEKIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVV-------FPKEHIGPELQPVARELEKVQDIIDLIRWAMKAE----EIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.................................................................... 165
61 -11.6001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  13  1..............................................................................MGSDKIMKVSDILTVAIRLEEEGERFYRE--LSEHFNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSY-----LAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVE-----DSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................ 150
62 -11.1001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  9  1..............................................................................MKDLKGTKTAENLKQGFIGESMANRRYLAKRADEEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPA-----------------------TDKPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQLKG...................................................................... 142
63 -10.8003dde_A mol:protein length:239 TENA/THI-4 protein, Domain of Unknown Function with a Heme Oxygenase-like Fold  ali model follow..  6  2............................................MSIIDLTKLEQKVATMW--DSILTNSPFIHEVLDGKATKALYAIYMTETYHYTKHNAKNQALVGIMGKDLPGKYLSFCFHHAHEEAGHELMALSDIASIGFDREDVLSSKPLPATETLIAYLYWISAT-----GNPVQRLGYSYWAENVYGYIDPVLKAIQSTLDLTPQSMKFFIAHSKIDAKHAEEVNEMLHEVCKTQEDDSVVAVMENSLVLTARILDDVWK........................................... 219
64 -10.3004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  6  3............................................................................GSMAQLKGSKTEENLKYAFAGESQANRRYLASKADVEGQNDIAALFRSTAEGETGHAHGHLEYLEAVGDPATG-------------------------LPFGTSRQNLQSAIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGLVD...................................................................... 144
65 -10.1002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  6  4....................................................................................YTLAEFLAHAIALETEAAERYVELAMEAHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVGDENDIHYLMTPYH-------ALRYARDNE-----RGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS.................................................................... 153
66 -9.9703b5o_A mol:protein length:244 CADD-like protein of unknown function  ali model follow..  7  2............................................MEFNHLTKQLNQLLAQDYVAFSITENPVVQMLSQASFAQIAYVMQQYSIFPKELVGFTELARRKALG-AGWNGVAQELQENIDEEISHYTLLADGLEEGLGVAVKNTMPSVATSKLLRTVLSLF--------DRQVDYVLGATYAIEATSIPELTLIVKLVEWLHEGAIPKDLQYFLDEWEIEHEAGLRTSVAAYIQPEEFGEFAAGFRAMIDAMQVWWQELAQE.......................................... 228
67 -9.3303q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  8  17.............................................................................PISEEEKEGLIEMRE-----EEKLARDVYLTLYNKWKLQ----IFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGA----IE-----LDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISK............................................................. 173
68 -9.2403q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  8  11............................................................................QPISEEEKEGLIEMRE-----EEKLARDVYLTLYNKWKLQ----IFKNIAESEQTHMDAVKYLLEKYNIPDPVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGA----IE----DLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISK............................................................. 168
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.