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Query: 2pc6_A mol:protein length:165 Probable acetolactate synthase isozyme III (Small subunit), from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKLLast
1 -81.7002pc6_A mol:protein length:165 Probable acetolactate synthase isozyme III (Small subunit)  ali model  100  1GHMRHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLSSEGYVERELMLVKVRAVGKDREEMKRLADIFRGNIIDVTNELYTIELTGTRSKLDGFLQAVDCNLILEIARTGVSGLSRGERVLKL 165
2 -77.2002f1f_A mol:protein length:164 Acetolactate synthase isozyme III small subunit  ali model follow..  57  1.MARRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVKRNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAIVEVARSGVVGLSRGDKIMR. 164
3 -71.9002fgc_A mol:protein length:193 acetolactate synthase, small subunit  ali model follow..  38  21.IREHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIVRFDEDKQEIFQLVEIFRGKIIDVSREGAIIEITGARSKVEAFINLLPQKQVEEIARTGIVAMNRWNV.... 181
4 -50.5001y7p_A mol:protein length:223 Hypothetical protein AF1403  ali model follow..  12  1GHMLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKLIYFEIEGGDFEKILERVKTFDYIIEIEEEESFERVFGKRVIILGGGALVSQVAIGAISEADRHNLRGERISVDTMPVVGEEEIAEAVKAVSRLHRAEVLVLAGGIMGGKITEEVK. 165
5 -45.5002lvw_A mol:protein length:98 Acetolactate synthase isozyme 1 small subunit  ali model follow..  28  9..DNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSHIWLLV-NDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFF......................................................................... 97
6 -15.3002ko1_A mol:protein length:88 GTP pyrophosphokinase  ali model follow..  16  8......IRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK-NTDKLTTLMDKLRKVQGVFTVERLSNLE................................................................................... 82
7 -13.7002f06_A mol:protein length:144 conserved hypothetical protein  ali model follow..  12  4.MVAKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIV----------------SDPDKAYKALKDNHFAVNITDVVGISCPNVPGALAKVLGFLSAEGVFIMYSFANNNVANVVIRPSNMDKCIEVLKEKKVDLLAASDLYKL......... 144
8 -12.6002nyi_A mol:protein length:195 unknown protein  ali model follow..  20  92..REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRVEEEFGVD......................................................................................... 169
9 -12.5001zpv_A mol:protein length:91 ACT domain protein  ali model follow..  15  4..MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQ-TVLDEYFTMMAVVSSDEKQDFTYLRNEFEAFGQTLNVKINIQSAAIFEAM............................................................................. 88
10 -11.0002mda_A mol:protein length:95 Tyrosine 3-monooxygenase  ali model follow..  14  18..VLNLLFSLRGTKPSSLSRAVKVFETFEAKIHHLETRPAQRPLAGEYFVRFEVPSGDLAALLSSVRRVSDDVRSA......................................................................................... 95
11 -10.2001u8s_A mol:protein length:192 glycine cleavage system transcriptional repressor, putative  ali model follow..  10  5..QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRI--AMFGKEFTLLMLISGSPSNITRVETTLPLLTMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTI........................................... 129
12 -10.2005fii_A mol:protein length:102 PHENYLALANINE-4-HYDROXYLASE  ali model follow..  17  15QNGAISLIFSLKEEVGALAKVLRLFEENDVNLTHIESRPSR-LKKDEYEFFTHLDKRSLPALTNIIKIL................................................................................................ 82
13 -9.5102re1_A mol:protein length:167 Aspartokinase, alpha and beta subunits  ali model follow..  9  33..........VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVS--AVGLGMRSHVGVAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYMELATRVLHK....................... 162
14 -9.4002nzc_A mol:protein length:86 Hypothetical protein  ali model follow..  16  9.....ILTIVVEDREKAYRQVNELLHNFSEDILLRVGYPVREENMAIIFLVLKTDNDTIGALSGKLGQISGV............................................................................................. 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.