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Query: 2q3x_A mol:protein length:171 Regulating synaptic membrane exocytosis protein 1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SPGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLAPLTRRASQSSLESSSGPPCIRSLast
1 -97.7002q3x_A mol:protein length:171 Regulating synaptic membrane exocytosis protein 1  ali model  100  1SPGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLAPLTRRASQSSLESSSGPPCIRS 171
2 -68.0002b3r_A mol:protein length:134 Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide  ali model follow..  28  2.................SGAVKLSVSYRNGTLFIMVMHIKDLVTED--GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSETLRQRELQLSVL-SAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATYL............................ 128
3 -67.6001rh8_A mol:protein length:142 Piccolo protein  ali model follow..  29  2.............SHPITGEIQLQINYDLGNLIIHILQARNLVPRDNNG-YSDPFVKVYLLPGRSAEYKRRTKYVQKSLNPEWNQTVIYKEQLMKKTLEVTVW-DYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQTE............................. 141
4 -66.5003fdw_A mol:protein length:148 Synaptotagmin-like protein 4  ali model follow..  28  5.............NIFVTGRIAFSLKYQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYESLLAQRTLQFSVW-HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKISA............................ 138
5 -64.7001a25_A mol:protein length:149 PROTEIN KINASE C (BETA)  ali model follow..  27  2SPGISGGGGGILDSMERRGRIYIQAHIDREVLIVVVRDAKNLVPMDPNG-LSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQESDKDRRLSVEIW-DWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEE............................. 142
6 -64.0004dnl_A mol:protein length:140 Protein kinase C alpha type  ali model follow..  30  2.............HTEKRGRIYLKAEVADEKLHVTVRDAKNLIPMDPNG-LSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKPSDKDRRLSVEIW-DWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQEE............................. 129
7 -63.8004ts6_A mol:protein length:132 Rab3 interacting molecule variant 2  ali model follow..  28  5.............SIPIEGRLQLKLGYDTLQLIVTLVCATGLSLRQSGA-GRNPYAKVFLLPDRSHKSKRRTKTVGTTCEPRWGQTFVYSCDLNGRLLEVTLW-DYVRYGANDFIGEVVIDLAHHILDD-EAEWYQLQ................................. 132
8 -63.1004lcv_A mol:protein length:138 Double C2-like domain-containing protein beta  ali model follow..  22  1........GGSGSGSTALGTLDFSLLYENNALHCTISKAKGLKPMDHNG-LADPYVKLHLLPGASKANKLRTKTLRNTLNPSWNETLTYYEDMIRKTLRISVC-DEDKFRHNEFIGETRVPLKKLKPNHTKTFSICLEKQ............................... 136
9 -62.9001v27_A mol:protein length:141 Regulating synaptic membrane exocytosis protein 2  ali model follow..  26  3.............SGSSGGQLSIKLWFDGHQLIVTILGAKDLPSREDGR-PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSREFRERMLEITLW-DQARVEESEFLGEILIELETALLDD-EPHWYKLQTHDSGPSSG........................ 141
10 -61.9002chd_A mol:protein length:142 RABPHILIN-3A  ali model follow..  21  2....SEANSYDSDQATTLGALEFSLLYDNSNLQCTIIRAKGLKPMDSNG-LADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHEDMQRKTLRISVC-DEDKFGHNEFIGETRFSLKKLKANQ-RKNFNICLER............................... 140
11 -61.3002uzp_A mol:protein length:144 PROTEIN KINASE C GAMMA TYPE  ali model follow..  29  1...........SMHTERRGRLQLEIRAPADEIHVTVGEARNLIPMDPNG-LSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNPGDVERRLSVEVW-DWDRTSRNDFMGAMSFGVSELLKAP-VDGWYKLLNQEE............................. 131
12 -60.8002bwq_A mol:protein length:129 REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN 2  ali model follow..  27  2...............FLSGQLSIKLWFDGHQLIVTILGAKDLPSREDGR-PRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSREFRERMLEITLW-DQARVEESEFLGEILIELETALL-DDEPHWYKLQ................................. 129
13 -60.4004mjj_A mol:protein length:138 Double C2-like domain-containing protein alpha  ali model follow..  23  4..........DSDDATALGTLEFDLLYASCTLHCSILRAKGLKPMDFNG-LADPYVKLHLLPGACKANKLKTKTQRNTLNPVWNEDLTYSDDITHKVLRIAVC-DEDKLSHNEFIGEIRVPLRRLKPSQ-KKHFNICLER............................... 136
14 -59.3002dmg_A mol:protein length:142 KIAA1228 protein  ali model follow..  27  1........GSSGSSGSPLGQIQLTIRHQRNKLIVVVHACRNLIAFSEDG--SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSPEVQRRTLDVAVK-NSGGFLSKDLLGKVLVALASEELAKGWTQWYDLTEDSGPSS.......................... 141
15 -59.2002d8k_A mol:protein length:141 synaptotagmin VII  ali model follow..  27  2.......SSGSSGSRENLGRIQFSVGYQESTLTVKIMKAQELPAKDFSG-TSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEEKVVQRILYLQVL-DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSGPSS........................... 140
16 -57.9001rsy_A mol:protein length:152 SYNAPTOTAGMIN I  ali model follow..  25  16.....MVEKEEPKEEEKLGKLQYSLDYQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKSELGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE.............................. 152
17 -57.8005lo8_A mol:protein length:162 Rabphilin-3A  ali model follow..  23  6TGGQQMGRGSDFGDIEERGKILVSLMYQQGGLIVGIIRCVHLAAMDANG-YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDSDLAKKSLDISVW-DYDIGKSNDYIGGCQLGISAKGEDKKIERWHQLQNENH............................. 162
18 -57.5002enp_A mol:protein length:147 B/K protein  ali model follow..  25  3........SGSSGSKYQLGMLHFSTQYLHNHLTVRVIEARDLPPPISHMAHSNPYVKICLLPDQKN--SKQTGVKRKTQKPVFEERYTFELEAQRRTLLLTVV-DFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGP............................. 144
19 -57.4004wee_A mol:protein length:144 Synaptotagmin-1  ali model follow..  25  8.....GGGGILDSMVEKLGKLQYSLDYQNNQLLVGIIQAAELPALDMGG-TSDPYVKVFLLPDKKK--KFETKVHRKTLNPVFNEQFTFKSELGGKTLVMAVY-DFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE.............................. 144
20 -57.1002cm5_A mol:protein length:166 RABPHILIN-3A  ali model follow..  22  11.....EEQVERIGDIEERGKILVSLMYQQGGLIVGIIRCVHLAAMDANG-YSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDSDLAKKSLDISVW-DYDIGKSNDYIGGCQLGISAKGEDKKIERWHQLQNENHVSSD......................... 166
21 -57.0005h4y_A mol:protein length:150 Synaptotagmin-5  ali model follow..  25  1.......MGMQVADKHELGQLQYSLDYQSGQLLVGILQAMGLAALDLGG-SSDPYVRVYLLPDKRR--RYETKVHRQTLNPHFGETFAFKVELGGRVLVMAVY-DFDRFSRNDAIGEVRVPMSSVDLGRPVQAWRELQAAPR............................. 136
22 -56.9004ldc_A mol:protein length:149 Double C2-like domain-containing protein beta  ali model follow..  25  1..............GEERGRILISLKYQKQGLLVGIVRCAHLAAMDANG-YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEGDLAKKTLEVTVW-DYDIGKSNDFIGGVVLGINAKGEDKRIERWHTLTNEIP............................. 143
23 -56.1001ugk_A mol:protein length:138 Synaptotagmin IV  ali model follow..  23  1..........GSSGSSGLGTLFFSLEYERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKH--KVKTRVLRKTLDPAFDETFTFYTQIQELALHFTIL-SFDRFSRDDIIGEVLIPLSGIELSEGKMLNREIISGPS............................. 136
24 -55.2003fbk_A mol:protein length:153 Regulator of G-protein signaling 3  ali model follow..  21  3.............SHKVQGAGQLRLSIQDRVLLLHIIEGKGLISK--QPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKISGWYYLLGEHLGRTKHLKVARRR................. 146
25 -54.3001wfm_A mol:protein length:138 synaptotagmin XIII  ali model follow..  12  3........SGSSGSWNQAPKLHYCLDYQKAELFVTRLEAVTSNH----DGGCDCYVQGSVANRTGS-VEAQTALKKRQLHTTWEEGLVLPEELPTATLTLTLR-TCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSGP............................. 135
26 -53.0002nsq_A mol:protein length:155 E3 ubiquitin-protein ligase NEDD4-like protein  ali model follow..  19  2.............MATGLGEPVYGLSEDSRILRVKVVSGIDLAKKDIFG-ASDPYVKLSLYVANRELALVQTKTIKKTLNPKWNEEFYFRVNPSNHRLLFEVF-DENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTFKDFLLRPRSHKSRVKGFLRLKMAYMP....... 155
27 -52.8003b7y_A mol:protein length:153 E3 ubiquitin-protein ligase NEDD4  ali model follow..  18  1.............GMATCAVEVFGLLEDSRIVRVRVIAGIGLAKKDILG-ASDPYVRVTLYDPNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF-DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP....... 153
28 -51.1001w15_A mol:protein length:153 SYNAPTOTAGMIN IV  ali model follow..  23  1..GSPGISGGGGGIPSGRGELLVSLCYQTNTLTVVVLKARHLPKSDVSG-LSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDESLEEISVEFLVL-DSERGSRNEVIGRLVLGATAEGSRRQIAKWHMLCDG............................... 153
29 -50.1002z0u_A mol:protein length:155 WW domain-containing protein 1  ali model follow..  19  12GASEAAAFDSDESEAVGATRIQIALKYKNKQFAILIIQLSNLSALLQQQD-QKVNIRVAVLPSESTTCLFRTRPLDASDTLVFNEVFWVSPALHQKTLRVDVC-TTDRSHLEECLGGAQISLAEVCRSGESTRWYNLLS................................ 155
30 -50.0001tjm_A mol:protein length:159 Synaptotagmin I  ali model follow..  26  1.......SGGGGGILEKLGDICFSLRYTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEEQIQKVQVVVTVL-DYDKIGKNDAIGKVFVGYNSTGARRPIAQWHTLQVEEE............................. 150
31 -49.7006fd0_A mol:protein length:140 Protein KIBRA  ali model follow..  20  4.............SGSGATRIQIALKYKNKQFAILIIQLSNLSALLQQQD-QKVNIRVAVLPSESTTCLFRTRPLDASDTLVFNEVFWVSPALHQKTLRVDVC-TTDRSHLEECLGGAQISLAEVCRSGESTRWYNLLS................................ 134
32 -49.6006fjc_A mol:protein length:140 Protein KIBRA  ali model follow..  20  4.............SGSGATRIQIALKYKNKQFAILIIQLSNLSALLQQQD-QKVNIRVAVLPSESTTCLFRTRPLDASDTLVFNEVFWVSPALHQKTLRVDVC-TTDRSHLEECLGGAQISLAEVARSGESTRWYNLLS................................ 134
33 -49.1005ccj_A mol:protein length:152 Synaptotagmin-1  ali model follow..  27  1..............SEKLGDICFSLAYVAGKLTVVILAAKNLKKMDVGG-LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPWYNESFSFEEQIQKVQVVVTVL-DYDKIGKNDAIGKVFVGYNSTGAAAPIAQWHTLQVEEE............................. 143
34 -47.9003m7f_B mol:protein length:176 E3 ubiquitin-protein ligase NEDD4  ali model follow..  18  6...........................DTRVVRVKVIAGIGLAKKDILG-ASDPYVRVTLYDPSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVF-DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPKNGSED. 147
35 -46.2001dqv_A mol:protein length:296 SYNAPTOTAGMIN III  ali model follow..  29  130.........EGGSEKADLGELNFSLCYTAGLLTVTIIKASNLKAMDLTG-FSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDESVENVGLSIAVV-DYDCIGHNEVIGVCRVGPEAAD-RKPVEHWHQLVEEKTLSS.......................... 281
36 -45.4002r83_A mol:protein length:284 Synaptotagmin-1  ali model follow..  26  124.....DLQSAEKEEQEKLGDICFSLRYTAGKLTVVILEAKNLKKMDVGG-LSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEEQIQKVQVVVTVL-DYDKIGKNDAIGKVFVGYNSTGARRPIAQWHTLQVEEE............................. 275
37 -44.6006ank_A mol:protein length:289 Synaptotagmin-7  ali model follow..  28  14.........DSMGRLENLGRIQFSVGYQESTLTVKVMKAQELPAKDFSG-TSDPFVKIYLLPDKKH--KLETKVKRKNLNPHWNETFLFEEKVVQRILYLQVL-DYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPCSD------GSGSRGELLLSLCYNPSANSII. 170
38 -42.3006ei6_A mol:protein length:270 Coiled-coil and C2 domain-containing protein 1-like  ali model follow..  15  93....NEPLPKFHYEKRSFNIVHCNTDLTDSELEIVVVRGISYNVANPKD--VDTYVRVEFPLLNDESFKTKTNVIRDTSSPDYDERFKVDIQFKRHGVKFEIYSRGGFLRSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRK............................. 237
39 -41.1002dmh_A mol:protein length:140 Myoferlin  ali model follow..  22  1.......................GSSGSSGMLRVIVESASNIPKTKFG--KPDPIVSVIFKDE-----KKKTKKVDNELNPVWNEILEFDPLDFSSSLGIIVK-DFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLN----EKGQDTGATIDLVIGYDPPSGPSSG 140
40 -40.0005yq3_A mol:protein length:162 At3g55470  ali model follow..  22  2...........................AVGILEVSLISGKGLKRSDFLG-KIDPYVEIQY---KGQTRKSSVAKEDGGRNPTWNDKLKWRGSGADYKLIVKVM-DHDTFSSDDFIGEATVHVKELLEMGVEKGTAELRPTK.............................. 114
41 -39.9004ihb_A mol:protein length:133 Dysferlin  ali model follow..  17  4............................EFMLRVFILYAENVHTPDTD--ISDAYCSAVFAGV-----KKRTKVIKNSVNPVWNEGFEWDPLDQGSELHVVVK-DHETMGRNRFLGEAKVPLREVLATPSLSASFNAPLLDTKKQP-----TGASLVLQVSYTAAAS.... 133
42 -39.7004iqh_A mol:protein length:130 Dysferlin  ali model follow..  21  4............................THMLACLLVRASNLPSAKKDR-RSDPVASLTFRG-----VKKRTKVIKNSVNPVWNEGFEWDPLDQGSELHVVVK-DHETMGRNRFLGEAKVPLREVLATPSLSASFNAPLLDTKKQPTGA...................... 121
43 -37.7001rlw_A mol:protein length:126 PHOSPHOLIPASE A2  ali model follow..  17  1...........................SSHKFTVVVLRATKVTKGAFGDDTPDPYVELFISTTPDS--RKRTRHFNNDINPVWNETFEFIDPNQENVLEITLMDA--NYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE............................. 114
44 -37.7002enj_A mol:protein length:138 Protein kinase C theta type  ali model follow..  15  2.....................SSGSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGK-----NVDLISETTVELYSLKNNGKTEIWLELKPQGRM............................ 122
45 -37.5002fk9_A mol:protein length:157 protein kinase C, eta type  ali model follow..  19  1.......MGSSSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRKGHQLLDPYLTVSV----DQVRVGQTSTKQKTNKPTYNEEFCANVT-DGGHLELAVF-HETPLGYDHFVANCTLQFQELGASDTFEGWVDLEPEGKV............................ 143
46 -37.3005a52_A mol:protein length:168 CALCIUM-DEPENDENT LIPID-BINDING DOMAIN-CONTAINING PROTEIN  ali model follow..  21  1........................MENLVGLLRIHVKRGVNLAIRDISS--SDPYIVVHC-----GKQKLKTRVVKHSVNPEWNDDLTLSVTDPNLPIKLTVY-DYDLLSADDKMGEAEFHIGPFIEAIKFAHQLGPGLPNGTI........................... 112
47 -36.7001bdy_A mol:protein length:123 PROTEIN KINASE C  ali model follow..  13  2............................APFLRISFNSYELGSLQAEDD-ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRA-----AEDPMSEVTVGVSVLKNNGKAEFWLDLQPQAKV............................ 114
48 -36.1003w56_A mol:protein length:131 C2 domain protein  ali model follow..  17  1................MRGSENLYFQGQNMQLRLYNLRVRGLPS--DLMGITDGYVKVFC----GSANLGETSVNHNNANPWWTEEFSHFKAQENDILRLEVH-DEDTF-FDDLLGVCQRQIKVG.............................................. 103
49 -36.1002ep6_A mol:protein length:133 MCTP2 protein  ali model follow..  24  13.............................GILQVKVLKAADLLAADFSG-KSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVF-DEDGDKPPDFLGKVAIPLLS--IRDGQPNCYVLKNKD.............................. 115
50 -35.8001gmi_A mol:protein length:136 PROTEIN KINASE C, EPSILON TYPE  ali model follow..  21  1........................MVVFNGLLKIKICEAVSLKPTAPQTFLLDPYIALNV----DDSRIGQTATKQKTNSPAWHDEFVTDVC-NGRKIELAVF-HDAPIGYDDFVANCTIQFEELNGSRHFEDWIDLEPEGKV............................ 125
51 -35.8001yrk_A mol:protein length:126 Protein kinase C, delta type  ali model follow..  12  5............................APFLRIAFNSYELGSLQAEDE-ANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRA-----AEEPVSEVTVGVSVLKNNGKAEFWLDLQPQAKV............................ 117
52 -35.5003kwt_A mol:protein length:148 Munc13-1  ali model follow..  21  16............................SAKISITVVCAQGLQAKDKTG-SSDPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDQRFKRESDDFLGQTIIEVRT--LSGEMDVWYNLDKRTD............................. 131
53 -35.1004rj9_A mol:protein length:165 C2 domain-containing protein-like  ali model follow..  21  2........................LGHLVGLVKVRVVRGVNLAVRDLRS--SDPYVIVRM-----GKQKLKTRVIKKTTNPEWNDELTLSIEDPAVPVRLEVY-DKDTF-IDDAMGNAELDIRPLVEVVKMKIEGVADNTVV............................. 110
54 -35.0006ewl_A mol:protein length:139 Centrosomal protein 120  ali model follow..  10  3.....................HMASKSEQLLIVVSILEGRQFPRSPRL----SLVVEARF-----DGETLSTDPVEHKEQPQFCTELAWELDLQRTPIKLQCYAVDSSTSARESVGYIVLDLRSVQEIKQAPKWHPLLSSKY............................. 122
55 -34.6005a4x_B mol:protein length:177 AT3G17980  ali model follow..  22  1............MTTACPARTSSLMDDLLGLLRIRIKRGVNLAVRDISS--SDPYVVVKM------SQKLKTRVINKDVNPEWNEDLTLSVTDSNLTVLLTVY-DHDMFSKDDKMGDAEFEIKPY.............................................. 105
56 -34.4002nq3_A mol:protein length:173 Itchy homolog E3 ubiquitin protein ligase  ali model follow..  30  29............................KSQLQITVISAKLKENKKNWF-GPSPYVEVTV-----DGQSKKTEKCNNTNSPKWKQPLTVIVTPVSK-LHFRVW-SHQTLKSDVLLGTAALDIYET.............................................. 117
57 -34.3002jqz_A mol:protein length:131 E3 ubiquitin-protein ligase SMURF2  ali model follow..  22  2............................PVKLRLTVLCAKNLVKKDFFR-LPDPFAKVVVDGSGQ---CHSTDTVKNTLDPKWNQHYDLYIG-KSDSVTISVW-NHKKIHKKGFLGCVRLLSNAINRLKDT........................................ 101
58 -33.9003pyc_A mol:protein length:132 E3 ubiquitin-protein ligase SMURF1  ali model follow..  21  3...........................EFIKIRLTVLCAKNLAKKDFFR-LPDPFAKIVVDGSGQ---CHSTDTVKNTLDPKWNQHYDLYVG-KTDSITISVW-NHKKIHKKGFLGCVRLLSNAI.............................................. 97
59 -33.9001wfj_A mol:protein length:136 putative elicitor-responsive gene  ali model follow..  18  2.....................SSGSSGPHGTLEVVLVSAKGLEDADFLNN-MDPYVQLTC----RTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIF-DKDVGTEDDAVGEATIPLEPVFVEGSIPPAYNVVKDEE............................. 117
60 -33.8004icw_A mol:protein length:170 Centrosomal protein of 120 kDa  ali model follow..  11  2..........ASSGLEVLFQGPMVSKSDQLLIVVSILEGRHFPKRPKH----MLVVEAKF-----DGEQLATDPVDHTDQPEFATELAWEIDLQRTPIKLQCFALDPVTSAKETIGYIVLDLRTAQETKQAPKWYQLLSNKY............................. 132
61 -33.3003l9b_A mol:protein length:144 Otoferlin  ali model follow..  12  1.................MGSSSSGLVPRGMALIVHLKTVSELRGR------ADRIAKVTF-----RGQSFYSRVLENCEDADFDETFRWSSIDRNEVLEIQIF-NYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAI-------IKTSLSMEVRYQAADGT... 138
62 -33.2004v29_A mol:protein length:177 AT3G17980  ali model follow..  22  1............MTTACPARTSSLMDDLLGLLRIRIKRGVNLAVRDISS--SDPYVVVKM------KQKLKTRVINKDVNPEWNEDLTLSVTDSNLTVLLTVY-DHDMFSKDDKMGDAEFEIKPY.............................................. 105
63 -32.8004y1s_A mol:protein length:149 Perforin-1  ali model follow..  19  5.............................AHLVVSNFRAEHLAG--DATTATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFELLSTGGPLRVQVW-DADAGADDDLLGSCDRSPHSGFHEV----TCEL.................................. 102
64 -32.4005ixc_A mol:protein length:814 Cytosolic phospholipase A2 delta  ali model follow..  18  1....GAMGSESLSPGGPPGHPYQGEASTCWQLTVRVLEARNLRWADLLS-EADPYVILQLSTAPG--MKFKTKTLTDTSHPVWNEAFRFLQSQVKNVLELSIY-DEDSVTEDDICFKVLYDISEVLPGKLLRKTFSQSPQGE............................. 135
65 -31.7002cjt_A mol:protein length:131 UNC-13 HOMOLOG A  ali model follow..  18  1............................GGVMSLLCVGVKKAKFDGAQE-KFNTYVTLKV-----QNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNK--GLIWDTMVGTVWIPLRTIRQSNEPGEWLTLDSQAIMAD.......................... 110
66 -30.9002cjs_A mol:protein length:167 UNC-13 HOMOLOG A  ali model follow..  17  10............................GGILSLLCVGVKKAKFDGAQEK-FNTYVTLKV-----QNVESTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNK--GLIWDTMVGTVWIPLRTIRQSNEEGEWLTLDSQAI............................. 116
67 -25.9004p42_A mol:protein length:474 Extended synaptotagmin-2  ali model follow..  22  346...........................SSALLILYLDSARNLPSGKKISSNPNPVVQMSV-----GHKAQESKIRYKTNEPVWEENFTF-HNPKRQDLEVEVRDE----QHQCSLGNLKVPLSQLSEDMTVSQRFQLSNSGP............................. 454
68 -17.1001djg_A mol:protein length:624 PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C, ISOZYME DELTA1  ali model follow..  19  498..............................RLRVRIISGQQLPVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNFNPRWDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLK............................................. 595
69 -15.4005ue8_A mol:protein length:961 Protein unc-13 homolog A  ali model follow..  22  162..............................KISITVVCAQGLQAKDKTG-SSDPYVTVQV-----GKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVWDEDDDIKSDDFLGQTIIEVR--TLSGEMDVWYNLDKRTD............................. 275
70 -14.2002yrb_A mol:protein length:156 Protein fantom  ali model follow..  13  8...................DETIHLERGENLFEIHINKVTFSSEVLQGDKEPVTFCTYAFYD-----FELQTTPVVRGLHPEYNFTSQYLVHIQKNTITLEVHQAYST--EYETIAACQLKFHEIEKSGRIFCTASLIGTKG............................. 134
71 -13.3003qr1_A mol:protein length:813 PHOSPHOLIPASE C-BETA (PLC-BETA)  ali model follow..  22  651..............................TIEIKIISAQFLS-----DKQISSYVEVEMLPTDTVRKKFKTKTVNNNMDPYYNENAFVFKKVV-AVVRIIVNED-----GGKFIGHRLMPLDGIK............................................. 742
72 -12.7001cjy_A mol:protein length:749 PROTEIN (CYTOSOLIC PHOSPHOLIPASE A2)  ali model follow..  24  20...............................FTVVVLRATKVTKGAFGDDTPDPYVELFI--STTPDSRKRTRHFNNDINPVWNETFEF-DPNQENVLEITLMDA.................................................................. 94
73 -12.6003qr0_A mol:protein length:816 phospholipase C-beta (PLC-beta)  ali model follow..  22  651..............................TIEIKIISAQFLS-----DKQISSYVEVEMLPTDTVRKKFKTKIIENNMDPYYDEKVFVFKKVV-AVVRIIVSEE-----NGKFIGHRVMPLDGIK............................................. 742
74 -12.1003nsj_A mol:protein length:540 Perforin-1  ali model follow..  15  414...................................................TDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFELLSTGGPLRVQVW-DADYGWDDDLLGSCDRSPHSGFHEV----TCELNHGRVKFSYHAKCLPHLTGGTCLEYAPQGLLGDP 525
75 -11.9004qj3_B mol:protein length:793 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3  ali model follow..  16  623..............................ALRVKVISGQFLS-----DRKVGIYVEVDMF-PVDTRRKYRTRTSQGNFNPVWDEEPFDFPKVV-ASLRIAAFEE-----GGKFVGHRILPVSAIR............................................. 713
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.