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Query: 2qzv_A mol:protein length:873 Major vault protein, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAGCGCPCGCGAMATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDREGKGRVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRALQNFRDLRGVLHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPSGVEELLNLGHDPLADRGQKGTAKPLQPSAPRNKTRVVSYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLLGLGSDGQPPAQKLast
1 -212.0002qzv_A mol:protein length:873 Major vault protein  ali model  100  1MAGCGCPCGCGAMATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDREGKGRVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRALQNFRDLRGVLHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPSGVEELLNLGHDPLADRGQKGTAKPLQPSAPRNKTRVVSYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLLGLGSDGQPPAQK 873
2 -187.0006bp7_A mol:protein length:934 Major vault protein  ali model follow..  98  63.AAEWDRGFLGLMATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVANPVSRDTQSSVLFDITGQVRLRHADQEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDREGKGRVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRALQNFRDLRGVLHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGESEEKVSHQAGDCWLIRGPLEYVPSAKVEVVEERQAIPLDQNEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPSGVEELLNLGHDPLADRGQKGTAKPLQPSAPRNKTRVVSYRVPHNAAVQVYDYRAKRARVVFGPELVTLDPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSSPINLFSTAFGLLGLGSDGQPPAQK 934
3 -94.3003gf5_A mol:protein length:387 Major vault protein  ali model follow..  96  2.........PLGMATEEAIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPVRMVTVPPRHYCIVANPVSRDAQSSVLFDVTGQVRLRHADQEIRLAQDPFPLYPGELLEKDITPLQVVLPNTALHLKALLDFEDKNGDKVMAGDEWLFEGPGTYIPQKEVEVVEIIQATVIKQNQALRLRARKECFDRDGKERVTGEEWLVRSVGAYLPAVFEEVLDLVDAVILTEKTALHLRARQNFKDLRGVAHRTGEEWLVTVQDTEAHVPDVYEEVLGVVPITTLGPRHYCVILDPMGPDGKNQLGQKRVVKGEKSFFLQPGERLERGIQDVYVLSEQQGLLLKALQPLEEGEGEERVAHQAGDRWLIRGPLEYVPSAKVEVVEERQAIPLD.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 387
4 -43.3001y7x_A mol:protein length:113 Major vault protein  ali model follow..  88  2.........................................................................................................................SHMQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVIL................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 113
5 -28.6001win_A mol:protein length:143 Flotillin 2  ali model follow..  9  6...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SGQRISLEIMTLQPRCEVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKD............................................................................................................................................................................................................................................. 121
6 -20.9003bk6_A mol:protein length:188 PH stomatin  ali model follow..  10  22...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ETITKDNVPVRVNAVVYFRVVDPVKAV-------TQVKNYIMATSQISQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPWGIKVTAVEIKD--------------------ELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHPMALQLRTLQTISDVAGDKSN..................................................................................................................................................... 180
7 -19.0002rpb_A mol:protein length:113 hypothetical membrane protein  ali model follow..  10  18...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EVICKDNVVVTVDAVVYYQVIDPVKAV-------YNVSDFLMAIVKLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRWGVKITRVEIQR............................................................................................................................................................................................................................................. 107
8 -18.6004fvj_A mol:protein length:133 Stomatin  ali model follow..  8  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPLGSPSTDSLIKVDMRTISFDIPQEVLTKDSVTISVDGVVYYRVQNATLAV-------ANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKD............................................................................................................................................................................................................................................. 116
9 -18.6004fvg_A mol:protein length:133 Stomatin  ali model follow..  9  1..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GPLGSPSTDSAAKVDMRTISFDIPQEVLTKDSVTISVDGVVYYRVQNATLAV-------ANITNADSATRLLAQTTLRNALGTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKD............................................................................................................................................................................................................................................. 116
10 -15.4005cwd_A mol:protein length:179 Designed helical repeat protein  ali model follow..  12  2....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................STKEDARSTCEKAARKAAESNDEEVAKQAAKDCLEVAKQAGMPTKEAARSFCEAAARAAAESNDEEVAKIAAKACLEVAKQAGMPTKEAARSFCEAAARAAAESNDEEVAKIAAKACLEVAKQAGMPTKEAARSFCEAAKRAAKESNDEEVEKIAKKACKEVAKQAGMPWLE......................................... 173
11 -14.6006fti_1 mol:protein length:162 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1,RPN1  ali model follow..  17  23.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA...................................... 162
12 -11.6005nnv_A mol:protein length:282 Chromosome partition protein Smc,Chromosome partition protein Smc  ali model follow..  10  121..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EKQQALSLHNENVEEKIESGGSGGSRLTKQKQTQSSTKESLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSEMSSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEMKRLYKQKTTLLKDE............................................................... 280
13 -11.0005d23_A mol:protein length:102 Fibroin-modulator-binding protein-1  ali model follow..  5  5.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EERAARLAKMSAYAAQRLANESPEQRATRLKRMSEYAAKRLSSETREQRAIRLARMSAYAARRLANETPAQRQARLLRMSAYAAKRQASKKS............................................................................................ 96
14 -10.8005cwq_A mol:protein length:239 Designed helical repeat protein  ali model follow..  15  32..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DLKELAEALIEEARAVQELARVACERGNSEEAERASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNSEASEKAQRVLEEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACCRGNKE-EAERAYEDARRVEEEARKVKESAEEQGDSEVKRLAEEAEQLARE...................................... 219
15 -10.6005vjs_A mol:protein length:196 Reaction Center Maquette  ali model follow..  12  8..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EHQQLAQEFQQLLQEIQQLGRELLKGELQGIKQLREASEKARNPEKKSVLQKILEDEEKHIELLETLQQTGQEAQQLLQELQQTGQELWQLGGSGGPELRQKHQQLAQKIQQLLQKHQQLGAKILEDEEKHIELLETILGGSGDELRELLKGELQGIKQYRELQQLGQKAQQLVQKLQQTGQKLWQLG................................... 196
16 -10.5005cwc_A mol:protein length:210 Designed helical repeat protein  ali model follow..  11  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MSSEKEELRERLVKICVENAKRKGDDTEEAREAAREAFELVREAAERAGIDSSEVLELAIRLIKECVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITSSEVLELAIRLIKECVENAQREGYDISEACRAAAEAFKRVAEAARAGITSSETLKRAIEEIRKRVEEAQREGNDISE...................................... 179
17 -9.8504f61_I mol:protein length:240 Stathmin-like domain R4  ali model follow..  13  45...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................EEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQ................................... 223
18 -9.4505cwh_A mol:protein length:172 Designed helical repeat protein  ali model follow..  11  1.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MDSEEVNERVKQLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELKKQ......................................... 159
19 -9.4305mqf_S mol:protein length:2752 Serine/arginine repetitive matrix protein 2  ali model follow..  9  55.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................PDILDHE-RRVLRCLELEEMMEEQGYEEQQIQEKVATFRLMLLEKDVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAP..................................... 309
20 -9.3701jad_A mol:protein length:251 phospholipase C beta  ali model follow..  8  5..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GNMKEVTQLPEPQTASLAELQQMKLFLKLLKKQEKELKELERKGSKRREE---------LLQKYSVLFLEPVYPRGLDSQVVELKERLEMELIHEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKNYMKEVFPDGPE............................................. 251
21 -9.2705y5x_I mol:protein length:120 V-type ATP synthase, subunit (VAPC-THERM)  ali model follow..  22  9.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AISRAGGAMGGLGLIKSLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKA---LEAQYRERERAETEALLARYRERAEAEAKAVREKAMARLDEAVALVLKEV............................................... 118
22 -9.2705h78_A mol:protein length:197 cAMP-dependent protein kinase type II-alpha regulatory subunit,DHR14  ali model follow..  8  1.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GSHM----QIPPGLTELLQGYTVEVLRQQP-PDLVEFAVEYFTRLRSERVNERVK------------------------QLAEKAKEATDKEEVIEIVKELAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLAEVAKEATDKELVIYIVKILAELAKQSTDSELVNEIVKQLEEVAKEATDKELVEHIEKILEELKK.............................................................................. 197
23 -9.0306g90_J mol:protein length:620 U1 small nuclear ribonucleoprotein component SNU71  ali model follow..  10  269..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TLSDLPSDALDQLCKDIRTKV--VSIEKEKKMKSTYEESRRQRHQMQKVFDQIRKNHSGAKGSANTEEEDTNMEDEDEEDDTEDDLALEKRKEERDLEESNRRYEDMLHQLHSNTEPKIKSIRADIMSAENYEEHLEKNRSLYLKELLDHHRSFKEQEERRDEEDRAKNGNAKELAPIQLSDGKAISAGKAAAITLPEGTVKSENYNADKNVSESSEHVKIKFDFKKAIDHSVESSSEDEGYRESELPPTKPSEVDELVREFLGVYEDELVENQSKQALLNELRETFDE.......... 601
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.