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Query: 2r2y_A mol:protein length:153 Protein ADRM1, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150
# Score Template Links and tools%idFirst GPGSTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGSLGASGSSGHELSALLast
1 -86.3002r2y_A mol:protein length:153 Protein ADRM1  ali model  100  1GPGSTTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGTVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNECLNNPPMPGSLGASGSSGHELSAL 153
2 -63.3002kr0_A mol:protein length:411 Proteasomal ubiquitin receptor ADRM1  ali model follow..  96  1GPGSTTSGALFPSLVPGSRGASNKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFKAGSKRLFFWMQEPKTDQDEEHCRKVNEYLNNPPMPGALGASGSSGHELSA. 153
3 -58.5003jco_X mol:protein length:156 26S proteasome regulatory subunit RPN13  ali model follow..  23  2....................SMSSTVIKFRAGVCEYNERLCTPIPVQGEIEIKPNEEGFWDFEWRPTEKPVGRISLILIPGETMWVPIKSSKSGRIFALVF-SSNERYFFWLQEKNSAKDKEIYNKMIGVLNNSSESDEEESNDEKQKAQDV. 150
4 -9.6702rnr_B mol:protein length:110 TFIIH basal transcription factor complex p62 subunit  ali model follow..  12  3..........................MATSSEEVLLIVKKVRQKKQDGALYLMAE-----RIAWAPEGKDRFTISHMY--ADIKCQKISPEGKAKIQLLVLHAGDTTNFHFSNESTAVKERDAVKDLQQLLPKFKRKAN.............. 110
5 -8.3603mpc_A mol:protein length:103 Fn3-like protein  ali model follow..  6  5..........................................PAFPTGLSAVLDSSGNTANLTWNAAPGANSYNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNSAEAI......................... 90
6 -8.2902k7p_A mol:protein length:188 Filamin-A  ali model follow..  11  1GAMAPERPLVGVNGLDVTSLRPFDLVIPFTIKKGEITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDNMHIP..................................................................... 84
7 -8.1501wg7_A mol:protein length:150 Dedicator of cytokinesis protein 9  ali model follow..  17  1GSSGSSGAASLGSQKGGITKHG------YKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDS---CMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEME-EWITILNKILQLNFEAAMQEKRNGDSHEDDE. 144
8 -7.8501u5d_A mol:protein length:108 Src Kinase-associated Phosphoprotein of 55 kDa  ali model follow..  11  5.............................................KQGYLEKKSKDHSFFGSEWQKRKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTYEFTATSPAEA-RDWVDQISFLLKD.................... 106
9 -7.8306fbz_A mol:protein length:200 Eukaryotic translation initiation factor 4E-like protein,Eukaryotic translation initiation factor 4E-like protein  ali model follow..  12  56........GIYNNIAPVSELAVKSDYHLFKEGVRPEWEDPQNKHGGKWAYQFKDKRSVNIDELW--------LHTMLAAIGETLEDEEDGEVMG--VVVNVRKGFYRIGVWTRTTEKSKEMNIGRRLKEVLKLPPNEMVEFSGHTEAAQAGS. 191
10 -7.7303kio_C mol:protein length:166 Ribonuclease H2 subunit C  ali model follow..  11  40RPAPVDRF------TPAVRHDADGLQASFR-GRGLRGEEVAVPPGFAGFVMVTEEKG----------EGLIGKLNFSGDAEDKADEAQEPLERDFDRLIGATGSFSHFTLWGLETVPGPDAKVHRSLAAAIHAQVPED............... 166
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.