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Query: 2r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60
# Score Template Links and tools%idFirst SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGTLast
1 -40.7002r63_A mol:protein length:63 REPRESSOR PROTEIN FROM BACTERIOPHAGE 434  ali model  100  1SISSRVKSKMIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGT 63
2 -39.8001per_L mol:protein length:69 PROTEIN (434 REPRESSOR)  ali model follow..  98  1SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKRPRFLPELASALGVSVDWLLNGT 63
3 -39.2001sq8_A mol:protein length:64 dh434  ali model follow..  74  2LMGERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAKRPRFLPELARALGVAVDWLLNGA 64
4 -38.9001zug_A mol:protein length:71 PHAGE 434 CRO PROTEIN  ali model follow..  50  3TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRPRFLFEIAMALNCDPVWLQYGT 65
5 -32.0001adr_A mol:protein length:76 P22 C2 REPRESSOR  ali model follow..  31  5LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETPNGENLLALSKALQCSPDYLLKGD 68
6 -31.6003zhm_A mol:protein length:79 CI  ali model follow..  25  3DTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQPDQNRIYLLAKTLGVSEAWLMGRS 75
7 -31.2005a7l_A mol:protein length:80 CI  ali model follow..  25  4DTSNRLKQIMAERNLKQVDILNLIKLSKSTLSQYVNSVQPDQNRIYLLAKTLGVSEAWLMGFD 76
8 -30.8003zhi_A mol:protein length:83 CI  ali model follow..  22  5DTSNRLKQIMAERNLKQVDILNLIKLSKSTLSAYVASVQPDQNRIYLLAKTLGVSEAWLMGRS 77
9 -30.2002k9q_A mol:protein length:77 uncharacterized protein  ali model follow..  20  2ELSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETPVVVKYIAFLRSKGVDLNALFDRI 65
10 -30.0003bs3_A mol:protein length:76 Putative DNA-binding protein  ali model follow..  22  10MMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSPSLDMLVKVAELLNVDPRQLINGK 73
11 -29.5003omt_A mol:protein length:73 uncharacterized protein  ali model follow..  22  8KIFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVPSLETLFDIAEALNVDVRELIVST 71
12 -29.4001utx_A mol:protein length:66 CYLR2  ali model follow..  19  2.IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKNPSLQLALKIAYYLNTPLEDIFQWQ 64
13 -29.4002xiu_A mol:protein length:66 CYLR2  ali model follow..  19  2.IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKNPSLQLALKIAYYLNCPLEDIFQWQ 64
14 -28.9003mlf_A mol:protein length:111 transcriptional regulator  ali model follow..  23  17NAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTIKDSLLSKYMSAFNVKYDDIFLGN 80
15 -28.8003op9_A mol:protein length:114 Pli0006 protein  ali model follow..  17  9QFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETPDIEKLIRLATYFHLSIDELVGYV 72
16 -28.6003lfp_A mol:protein length:98 Csp231I C protein  ali model follow..  24  2.LIRRLKDARLRAGISQEKLGVLAGIDEASMNQYEKGHAPDFEMANRLAKVLKIPVSYLYTPE 68
17 -28.6004z5h_A mol:protein length:72 Antitoxin HipB  ali model follow..  25  10QLANAMKLVRQQNGWTQAELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDAK. 72
18 -28.5001b0n_A mol:protein length:111 PROTEIN (SINR PROTEIN)  ali model follow..  29  2.IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNTNPSIQFLEKVSAVLDVSVHTLLDEK 65
19 -28.2004o8b_A mol:protein length:122 Uncharacterized protein  ali model follow..  27  2.LGTRLKAARIRAGYSQKQLGMLVGMDEFSMNQYEREHSPNMRTSEQLAMVLQVPMAYLYCPE 68
20 -28.1002wiu_B mol:protein length:88 HTH-TYPE TRANSCRIPTIONAL REGULATOR HIPB  ali model follow..  23  12QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDAKN 75
21 -27.8001x57_A mol:protein length:91 Endothelial differentiation-related factor 1  ali model follow..  22  13EVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAPNNQVLGKIERAIGLKLRGKDIGK 76
22 -27.6002kpj_A mol:protein length:94 SOS-response transcriptional repressor, LexA  ali model follow..  19  9IFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAPRMGKVQALADYFNINKSDLIEDK 72
23 -27.2002mez_A mol:protein length:106 Multiprotein Bridging Factor (MBP-like)  ali model follow..  25  10DYYKIIKTAREQLGISQQQLAQKLKVSENIVKRFESGKLPTISQARQLEKILGIKLVTPLENN 73
24 -27.1002l49_A mol:protein length:99 C protein  ali model follow..  17  4TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGSTPPTDVMMNILQTPQFTKYTLWFMT 67
25 -26.7005k98_B mol:protein length:91 Antitoxin HipB  ali model follow..  23  15QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNDNTTLTTFFKILQSLELSMTLCDTKN 78
26 -26.7002p5t_A mol:protein length:158 Putative transcriptional regulator PezA  ali model follow..  24  2.IGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSVSTELIDIICQKFNVSYVDIVGED 64
27 -26.6005j2y_A mol:protein length:80 Regulatory protein  ali model follow..  16  11NMAFRAKATRTARRESQETFWSRFGISQSCGSRFENGENFPIYLLLHFYIEGQITDRQLAD.. 73
28 -26.0003ivp_A mol:protein length:126 Putative transposon-related DNA-binding protein  ali model follow..  20  12ALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKQHPSLQVLYDLVSLLNVSVDEFFLPA 75
29 -25.8003qq6_A mol:protein length:78 HTH-type transcriptional regulator sinR  ali model follow..  30  5.IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNTNPSIQFLEKVSAVLDVSVHTLL... 65
30 -25.2001rio_A mol:protein length:98 Repressor protein CI  ali model follow..  30  18RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINANAYNAALLAKILKVSVEEFS... 78
31 -24.7004pu3_D mol:protein length:118 Toxin-antitoxin system antidote transcriptional repressor Xre family  ali model follow..  18  43SLGLLIKERRKSAALTQDVAAMLCGVTKKTLIRVEKGEDVYISTVFKILDGLGIDIVSAQ... 102
32 -24.7003kz3_A mol:protein length:80 Repressor protein CI  ali model follow..  28  12RLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINANAYNAALLAKILKVSVEEFS... 72
33 -24.4001y7y_A mol:protein length:74 C.AhdI  ali model follow..  23  14.FGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGRNVSLVNILKLATALDIEPRELFC.. 74
34 -24.4002ewt_A mol:protein length:71 putative DNA-binding protein  ali model follow..  25  8QLGAKLRAIRTQQGLSLHGVEEKSQWKAVVVGSYERGRAVTVQRLAELADFYGVPVQELL... 70
35 -24.4002jvl_A mol:protein length:107 TrMBF1  ali model follow..  19  34EVGKAIEQGRQEPTMTQAELGKEIGETAATVASYERGTAPDQNILSKMERVLNVKLRGANIGA 99
36 -24.0002ef8_A mol:protein length:84 Putative transcription factor  ali model follow..  20  10CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFRRLDALELFELLEVVASRLGLPM... 70
37 -23.8001lli_A mol:protein length:92 PROTEIN (LAMBDA REPRESSOR)  ali model follow..  33  18.LKAIYEKKKNELGLSQESLADKLGMGQSGIGALFNGINANAYNAALLAKILKVSVEEFS... 77
38 -23.8002b5a_A mol:protein length:77 C.BclI  ali model follow..  22  11.FGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGRNISLINIHKICAALDIPASTFF... 70
39 -23.6004ghj_A mol:protein length:101 Probable transcriptional regulator  ali model follow..  23  30EIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNAEKGKQLDIMIAILMALDLTEQIDLFI... 90
40 -23.6004ia8_A mol:protein length:82 Regulatory protein  ali model follow..  22  12.VSFVIKKIRLEKGMTQEDLAYKSNLDRTAISGIERNRNLTIKSLELIMKGLEVSDVVFF... 71
41 -23.4003b7h_A mol:protein length:78 Prophage Lp1 protein 11  ali model follow..  18  8.VSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSPTITTIRKVCGTLGISVHDFF... 68
42 -23.3004i6u_A mol:protein length:82 Regulatory protein  ali model follow..  22  12.VSFVIKKIRLEKGMTQEDLAYKSNLDRTFISGIERNRNLTIKSLELIMKGLEVSDVVFF... 71
43 -23.2005uk3_A mol:protein length:176 Uncharacterized protein  ali model follow..  15  19IMSNQFIKAKESKGLTYQQMAQLLSVNKVWLTSVLHGQCCDIQLAHRICDTLGISHEYANELT 82
44 -23.2004f8d_A mol:protein length:82 Regulatory protein  ali model follow..  22  12.VSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNANLTIKSLELIMKGLEVSDVVFF... 71
45 -23.1004fn3_A mol:protein length:82 Regulatory protein  ali model follow..  22  12.VSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNRNLTIKALELIMKGLEVSDVVFF... 71
46 -23.1004i6t_A mol:protein length:82 Regulatory protein  ali model follow..  22  12.VSFVIKKIRLEKGMTQEDLAYKSNLDRAYISGIERNRNLTIKSLELIMKGLEVSDVVFF... 71
47 -23.1003f6w_A mol:protein length:83 XRE-family like protein  ali model follow..  20  15.LLDLLLEARSAAGITQKELAARLGRPQSFVSKTENARRLDVIEFMDFCRGIGTDPYALL... 74
48 -22.6003g5g_A mol:protein length:99 Regulatory protein  ali model follow..  22  23.VSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNRNLTIKSLELIMKGLEVSDVVFF... 82
49 -22.3003fya_A mol:protein length:99 Regulatory protein  ali model follow..  22  23.VSFVIKKIRLEKGMTQEDLAYKSNLDATYISGIERNRNLTIKSLELIMKGLEVSDVVFF... 82
50 -22.3003vk0_A mol:protein length:114 Transcriptional regulator  ali model follow..  23  22.LAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVERKWNIALSNIEKMAAALGVAAYQLL... 81
51 -22.1002ofy_A mol:protein length:86 Putative XRE-family transcriptional regulator  ali model follow..  16  16RLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRTPAFFTIAAVARVLDLSLDDVAA.. 76
52 -21.7003kxa_A mol:protein length:141 Putative uncharacterized protein  ali model follow..  28  62AGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSQSLQDKTVQKLANALGVSPLEVR... 122
53 -21.4003f51_A mol:protein length:117 Clp gene regulator (ClgR)  ali model follow..  26  28ALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGKEVSSELLASVCHALGASVADVL... 88
54 -21.2004y42_A mol:protein length:156 Cyanate hydratase  ali model follow..  13  13TLTDTIMMAKIRKNLTFEAINQGTGLSLAFVTAALLGQPLPEQAARVVAEKLDLDEDAIR... 73
55 -21.2003eus_A mol:protein length:86 DNA-binding protein  ali model follow..  18  14YLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRRRLDVIEFAKWMAACEGL........ 69
56 -21.1002fjr_A mol:protein length:189 Repressor protein CI  ali model follow..  18  9DVLDRICEAYGFS--QKIQLANHFDIASSSLSNRYTRGAISYDFAAHCALETGANLQWLLTGE 69
57 -21.1001zz6_A mol:protein length:198 Hydroxypropylphosphonic Acid Epoxidase  ali model follow..  25  10GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGTLTQLGRIAHVLGTSIGALTPPA 74
58 -21.0001dw9_A mol:protein length:156 CYANATE LYASE  ali model follow..  14  13DLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQALPADAARLVGAKLDLDEDSILL.. 74
59 -21.0005woq_A mol:protein length:120 Transcriptional regulator ClgR  ali model follow..  18  10VIGDVLRNARTDQGRTLREVSDAARVSLGYLSEVERGKEASSELLSAICDALDVPLSRVL... 70
60 -20.1002qfc_A mol:protein length:293 PlcR protein  ali model follow..  20  5KLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVPSMDILQGIAAKLQIPIIHFY... 64
61 -19.9006b9s_A mol:protein length:457 Methylphosphonate synthase  ali model follow..  15  242ASLSLLEYYFELSNLTKEKFAKRTNFSMETLADFFTKKLPTFDELKIIAKALNVNSRDLMPND 305
62 -19.8003bdn_A mol:protein length:236 Lambda Repressor  ali model follow..  28  17RLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINLNAYNAALLAKILKVSVEEFSPSI 80
63 -19.5003rzz_A mol:protein length:446 Hydroxyethylphoshphonate Dioxygenase (PhpD)  ali model follow..  19  7.DPFKLAHWMNARKYTAAQTADLAGLPLDDLRRLLGDEEPDPAAATALAEALSVEPSQLAADA 70
64 -19.2006b9r_A mol:protein length:450 Hydroxyethylphosphonate dioxygenase  ali model follow..  28  237DHGAMLRSVMAARLTTVTELADRSGLKTDRVAALCRTPRAEWPELSALAEALGVSVRELLVPH 300
65 -19.2001y9q_A mol:protein length:192 transcriptional regulator, HTH_3 family  ali model follow..  23  11QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESPTIATLWKIASGLEASFSAFFAND 74
66 -19.2003fmy_A mol:protein length:73 HTH-type transcriptional regulator MQSA (ygiT/b3021)  ali model follow..  17  13..PEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPSTIKLLRVLDKHPELL.... 69
67 -18.6005fd4_A mol:protein length:324 ComR  ali model follow..  13  24EFGQRVRQLRESASMTREQFCDELELSVRQLTRIEAGASPTFSKIQYIATRLGMGLYELM... 85
68 -18.5005j9i_A mol:protein length:104 Antitoxin igA-2  ali model follow..  15  42..PDEIVSIREQFNMSRGVFARLLHTSSRTLENWEQGRSVPNGQAVTLLKLVQRHPETL.... 98
69 -18.4005jub_A mol:protein length:310 Transcriptional regulator  ali model follow..  25  6SIGLRIKTERERQQMSREVLCLDGELTVRQLIRIEKGESPSLDRLSYIAKRLGKSMTELL... 67
70 -17.9003tyr_A mol:protein length:88 Transcriptional regulator  ali model follow..  14  21...NKLWKLLIDRDMKKGELREAVGVSKSTFAKLGKNENVSLTVLLAICEYLNCDFGDII... 77
71 -17.8002mqk_A mol:protein length:65 ATP-dependent target DNA activator B  ali model follow..  11  7DIRAGLRTLVENEETTFKQIALESGLSTGTISSFINDKNGDNERVSQTLQRW........... 59
72 -17.5002a6c_A mol:protein length:83 Helix-turn-helix motif  ali model follow..  22  12QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDSLESLIDMITSIGLKVE...... 70
73 -17.2002ppx_A mol:protein length:99 Uncharacterized protein Atu1735  ali model follow..  15  32..MPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGT.... 88
74 -17.0005y69_A mol:protein length:151 chain A  ali model follow..  16  4.TIKLLDEFLKKHDLTRYQLSKLTGISQNTLKDQNEKNKYTVSILRSLSMISGLSVSDVLF.. 65
75 -17.0001s4k_A mol:protein length:120 putative cytoplasmic protein ydil  ali model follow..  5..ALELQALRRIFDMTIEECTIYITNNSATWQRWEAGDIPSPEIIARLKEMKARRQRRI.... 64

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25.