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Query: 2uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKLLast
1 -117.0002uw1_A mol:protein length:338 PLASTID DELTA4 MULTIFUNCTIONAL ACYL-ACYL CARRIER PROTEIN DESATURASE  ali model  100  1MQVTHSMPPQKLEIFKSLDDWARNNVLIHLKSVEKSWQPQDYLPDPVSDGFEEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGRVDMRKIEKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICGSIASDEKRHATAYTKIVEKLAEIDPDTTVIAFADMMRKKITMPAHLMYDGSDELLFKHFTAVAQRLGVYSALDYCDILEFLVDKWNVERLTGLSDEGRKAQEYVCELGPKIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 338
2 -107.0001oq4_A mol:protein length:363 Acyl-[acyl-carrier protein] desaturase  ali model follow..  82  27.QVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAKEAPTMPFSWIFDRQVKL 363
3 -70.7001za0_A mol:protein length:275 POSSIBLE ACYL-[ACYL-CARRIER PROTEIN] DESATURASE DESA2 (ACYL-[ACP] DESATURASE) (STEAROYL-ACP DESATURASE)  ali model follow..  19  2.....AQKPVADALTLELEPVVEANMTRHLDTEDI-WFAHDYVPFDQGEFAFLGGRDWDPSQSTLPRTITDACEILLILKDNLAGHHRELVEHF-------ILEDWWGRWLGRWTAEEHLHAIALREYLVVTREVDPVANEDVRVQHVMKGYRAE-KYTQVETLVYMAFYERCGAVFCR---NLAAQIEEPILAGLIDRIARDEVRHEEFFANLVTHCLDYTRDETIAAIAARAADLDVLGADI-------EAYRDKLQNVADAGIFGKPQLRQLISDRITAWGLAGEPSLKQ............................................. 271
4 -21.8005uwz_A mol:protein length:243 Aldehyde decarbonylase  ali model follow..  12  12..........................................................DYRSDTYRDAYSRINAIVLEGEREAHANYLTLAEMLP----------DHAEALKKLAAMENRHFKGFQSCARNLEVTPDDPFARAYFEQLDGNFQQAAAEGDLCMVIQALIIECFAIAAYNVYIPVA----DAFARKVTEGVVKDEYTHLNFGQQWLKERFVTVREGIERANAQNL........................................................................................................ 175
5 -21.7004kvr_A mol:protein length:244 Aldehyde decarbonylase  ali model follow..  9  8...........................................PVAAVLDSTVGSSEALPDSDRYKDAYSRINAIYIEGEQEAHDNYIAIGTLL----------PDHVEELKRLAKMEMRHKKGFTACGKNLGVEADMDFAREFFAPLRDNFQTALGQGKTCLLIQALLIEAFAISAYHTYIPVS----DPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENL........................................................................................................ 188
6 -21.7005uxi_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  9  15.............................................................SETYKDAYSRINAIVIEGEQEAHENYITLAQLLP----------ESHDELIRLSKMESRHKKGFEACGRNLAVTPDLQFAKEFFSGLHQNFQTAAAEGKVCLLIQSLIIECFAIAAYNIYIPVA----DDFARKITEGVVKEEYSHLNFGEVWLKEHFAESKAELELANRQNL........................................................................................................ 175
7 -21.4004pgi_A mol:protein length:250 Aldehyde decarbonylase  ali model follow..  9  25..........................................................DFTSDRYKDAYSRINAIVIEGEQEAHDNYIAIGTLLP----------DHVEELKRLAKMEMRHKKGFTACGKNLGVKADMDFAREFFAPLRDNFQTALGQGKTCLLIQALLIEAFAISAYHTYIPVS----DPFARKITEGVVKDEYTHLNYGEAWLKANLESCREELLEANRENL........................................................................................................ 188
8 -21.0005ux2_A mol:protein length:234 Aldehyde decarbonylase  ali model follow..  10  1......................................................MTQLDFASAAYREAYSRINGVVIVGEGLANRHFQMLARRI----------PADRDELQRLGRMEGDHASAFVGCGRNLGVVADLPLARRLFQPLHDLFKRHDHDGNRCLVIQGLIVECFAVAAYRHYLPVA----DAYARPITAAVMNDESEHLDYAETWLQRHFDQVKARVSAVVVEALPLTL--------------------------------AMLQSLAADMRQIGMDPVETLASFSELFREALESVGFEAVEARRLLMRAAARMVGS............ 228
9 -20.8004z5s_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  9  1..........................................MPELAVRTEFDYSS------EIYKDAYSRINAIVIEGEQEAYSNYLQMAELLP----------EDKEELTRLAKMENRHKKGFQACGNNLQVNPDMPYAQEFFAGLHGNFQHAFSEGKVCLLIQALIIEAFAIAAYNIYIPVA----DDFARKITEGVVKDEYTHLNYGEEWLKANFATAKEELEQANKENL........................................................................................................ 174
10 -20.5004quw_A mol:protein length:231 Aldehyde decarbonylase  ali model follow..  9  1..........................................MPQLEASLELDFQS------ESYKDAYSRINAIVIEGEQEAFDNYNRLAEMLP----------DQRDELHKLAKMEQRHMKGFMACGKNLSVTPDMGFAQKFFERLHENFKAAAAEGKVCLLIQSLIIECFAIAAYNIYIPVA----DAFARKITEGVVRDEYLHRNFGEEWLKANFDASKAELEEANRQNL........................................................................................................ 174
11 -19.4005uxg_A mol:protein length:220 aldehyde deformylating oxygenase  ali model follow..  9  2.....................................................DKNWFSTPQEI-REGIKYLSAHFYPASIMDRWKILKKLSF--------EKAKIIANYSLQQVIEEIEHFDFFNEYFKEDPTVRLPPSYIKLFDGLVEDFQSSRWRENIATRFHMITEGVLATVGLKILNETSRKYNLLKFNEGIKRIIEDEARHVSFGLSLIEDKEYAVKR.................................................................................................................. 165
12 -19.3005k52_A mol:protein length:265 Aldehyde decarbonylase  ali model follow..  12  37..........................................................DYQSETYKDAYSRINAIVIEGEDEAANNYVRLAEL----------MPEQSEELASLAKMEARHKKGFTACGKNLNVTPDMDFAKKFFSDLHGNFQVAAAAGNICLLIQALIIEAFAISAYNVYIPHA----DDFARKITENVVKDEYLHLNFGEQWLKANFESAKDELERANRENLAIVW--------------------------------RMLDEVAGDALVLGMEKEALMEDFTIAYQEALQNIGFSTRETLRMLTAGLAAAAA............. 259
13 -19.1005k53_A mol:protein length:262 aldehyde deformylating oxygenase  ali model follow..  10  1...SSGLVPRGSHMAS-------------MTGGQQMGRGSEFMPQLEASPTIDFQT------ETYKDAYSRINAIVIEGEQEAHDNYLTLAELLA----------DKKAELVGLSKMENRHMKGFQACGRNLKVTPDMAFAKQFFSELHKNFQTAAAQGQICLLIQSLIIECFAIAAYNIYIPVA----DDFARKITEGVVKEEYSHLNFGEVWLQAHFEESKAELEAANRQNLPIIWKLLNAVADD----------ARVLGMEKDALIEDFMIAYGEALGNIGFNDIMRMSAQGLAA........................................ 256
14 -19.0003ee4_A mol:protein length:323 Probable ribonucleoside-diphosphate reductase  ali model follow..  13  1..MAGMTRTRSGSLAAGGLNWASLPLKLFAGGNAKFWHPADI-------DFTRDRADWEKLSDDERDYATRLCTQFIAGEEAVTEDIQPFMSAMRA-----EGRLADEMYLTQFAFEEAKHTQVFRMWLDAVGISEDLH-AELPECLNALSADPSPAAQVRASVTYNHIVELALTGYYAWHKICVERAILPGMQELVRRIGDDERRHMAWGTFTCRRHVAADDA.................................................................................................................. 225
15 -18.9002oh3_A mol:protein length:167 COG1633: Uncharacterized conserved protein  ali model follow..  15  2................................................................MGYTLAEFLAHAIALETEAAERYVELADMME-----AHNNLDTATVFRDMARFSTLHGDEIKQRSLELPKLMSWQYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYK---EAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTPRPS.................................................................................................................... 153
16 -18.3004hr0_A mol:protein length:316 Ribonuleotide reductase small subunit  ali model follow..  9  2.....AVDDDDKMVHHDGFQTVKATID-EKAKRNGKWNPAD-IDFSQ------DQKDFASLTSEEKISALPLVAGFSAGEEAVTLDILPMAHALARQ-----GRLEDVLFLTTFMHDEAKHVEMFSRWQQAVGIGQMDLYEALPEAMNRLYADDSPEAVIRAATVYNMIVELAESGYYTFRQIYKKAGLFPGLLQGIDYLNMDEGRHIQFGIYTIQRIVNEDERRYMDELWPHVIGYVDYLTELGKRQQQLARTYALEIDYDLLRHY----VIKQFNLRKKQISRTKRVDVVEGLEKTAAE..................................... 309
17 -17.9001mhy_D mol:protein length:521 METHANE MONOOXYGENASE HYDROXYLASE  ali model follow..  9  3ISLATKAATNRAPVGVEPQEVHKWLQSTKYPTKYHMANETKYARMEAAKDGLTRLGAGNKVHPRWGETMKVISNFLEVGEYNAIAASAMLWDS--------ATAAEQKNGYLAQVLDEIRHTHQCAFINHYYSKHYHDPAGHNDARRTRAIGPLWKGMKRVSVNLQLVGEACFTNPLIVAVTEWASANGDEITPTVFLSVETDELRHMANGYQTVVSIANDPASAKFLNLNNAFWTQQKYFTPVLGYLFEYGSKFKVEPWVKTWNRWVSEDWGGIWIGRLGKYGVESPRSLRDAKRDAYWAHHDLALAAYAMWPLGFARLALPDEEDQAWFEAN.... 370
18 -17.7004iit_A mol:protein length:320 Phenylacetate-CoA oxygenase subunit PaaA  ali model follow..  11  1..MGSSGSTEEQRFDQRIAQ-------------ETAIEPQDWMPDAYR------------------KTLIRQIGQHAHSEIVGMLPEGNWITR--------APTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDLYQKMLDGQMKYSSIFNYPTL-ADIGVIGWLVDGAAIVNQVALCR----TSYGPYARAMVKICKEESFHQRQGFEACMALAQGNEAQR-QMLQDAINRFWWPALMMFGPNDDNSPNSARSMAWKIKLHSNRQRFVDNTVPQVEILGMTQFDEASGHYRFGEIDWQEFNEVISGRGICNHERLAAKRKAEGEWV--REAA. 301
19 -17.6002fzf_A mol:protein length:175 hypothetical protein  ali model follow..  14  20...................................................................SLEELLGMAIKAEIGAREFYKSLAEK--------IKIEALKEKINWLAEEEKKHEALLRKLYMFPGKEVVFPKEHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYL---KLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYELLLNWE.................................................................................................................... 165
20 -17.6001vjx_A mol:protein length:157 putative ferritin-like diiron-carboxylate protein TM1526  ali model follow..  10  8...................................................................KVSDILTVAIRLEEEGERFYRELSE---------HFNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYY---ELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRES........................................................................................................................ 150
21 -17.4003q4n_A mol:protein length:193 Uncharacterized protein MJ0754  ali model follow..  10  7..........................................................SLPKQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQ------------IFKNIAESEQTHMDAVKYLLEKYNIPDPVKFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLE---KWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNY........................................................................................................................ 157
22 -17.4001j30_A mol:protein length:144 144aa long hypothetical rubrerythrin  ali model follow..  15  2.............................................................KDLKGTKTAENLKQGFIGESMANRRYLYFAKRADEE-----GYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPAT-------------DKPIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQL........................................................................................................................ 140
23 -17.2004di0_A mol:protein length:144 Rubrerythrin  ali model follow..  17  6.............................................................AQLKGSKTEENLKYAFAGESQANRRYLYFASKADVE-----GQNDIAALFRSTAEGETGHAHGHLEYLEAVG---------------DPATGLPFGTSRQNLQSAIAGETHEYTDMYPGMAKTARDEGFEEIANWFETLAKAERSHANRYTKALDGLVD...................................................................................................................... 144
24 -17.1003q4o_A mol:protein length:196 Uncharacterized protein MJ0754  ali model follow..  9  12..........................................................GSHMQPISEEEKEGLIEMREEEKLARDVYLTLYNKWKLQ------------IFKNIAESEQTHMDAVKYLLEKYNIPDPGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLE---KWINKTDNEDIKFVYENLMKGSRNHMRAFVRMLNNYGSNYTPQYISK............................................................................................................. 173
25 -16.9003sid_A mol:protein length:180 Symerythrin  ali model follow..  15  23.................................................................HNNTDANAASSIEVEECDCMYPTF------AEIARRSGQPEIGAMFDAIAKEEGMHAQLLTKLYSELEAETLEAKRLVSTIESQIDAVASDSRGLRRALETALEVETIESQTYPAFAKLAAEQGNMEVATAFEAIVKSETKHANWVKRALENLLEVA.................................................................................................................... 180
26 -16.7002uw2_A mol:protein length:332 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE M2 SUBUNIT  ali model follow..  9  2MTKAAAPGVEDEPLLRENPRRFVIFPIEY-KAEASFWTAEEV-------DLSKDIQHWESLKPEERYFISHVLAFFAASDGIVENLVERFSQEV--------QITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGPMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVR...................................................................................................... 241
27 -16.6003dhg_A mol:protein length:500 toluene 4-monooxygenase hydroxylase alpha subunit  ali model follow..  12  1..MAMHPRKDWYELTRATEQLFPERMSGHMGIPLEKWESPEYVSIQREKDAGAYSVKAALERENSDPGWISTLKSHYGAEYAAVTGEGRMARF--------SKAPGNRNMATFGMMDELRHGQLQLFFPHEYCKKDRQFDWAWRAKHFFDDIITGRDAISVAIMLTFSFETGFTNMQFLGLAADAAEAGDYTFANLISSIQTDESRHAQQGGPALQLLIENGKREEAQKKVDMAIWRAWRLFAVLT-GPVMDYYTPLEDRSQSFKEFMYEWIIGQFERSLIDLGLDKPWYWDLFLKDIDELHHSYHMGVWYWRTTA-NPAAGVTPEERDWLEEK.... 361
28 -16.6005hyg_A mol:protein length:317 Uncharacterized protein  ali model follow..  8  16.HRRAAVKREEPDVYALFDP-------------GRPDFREDMIPFRGHPIWER----DETRSRLLSWGWVAYNRNTVLIEQRI---ANPAFELVIGGAYPGLGGQQLELAVAQAMVDEQYHTLMHINGSAVTRRRVLPDSHITTIHQEHLDRCEEPWQRSLTTLGFATVAEISINAYLDLLAD--DQEIQVVNSTTVKLHNRDEYCHASISGEMMKQVYEALPADRRRFLLEKVVAGL.................................................................................................... 240
29 -16.5002clb_A mol:protein length:188 DPS-LIKE PROTEIN  ali model follow..  13  23.................................................................IKKLVDKLVKATAAEFTTYYYYTILRMHLT-----GMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADISACSDAYLPENWKDPKEILKVLLEEQCAIRTWKEVCDMTYG-KDPRTYDLAQRILQEEIEHEAWFLELLYG......................................................................................................................... 169
30 -16.5004r42_A mol:protein length:236 Alr3090 protein  ali model follow..  9  11..........................................................VVNIGEANPRFAQLLLEQFGGATGELSAALQYWVQ-----SFHVENAGIKDMLQDIAIEEFSHLEMVGKLIEAHTKNVDQTEAYKSTLFAVRGMGLNEGGDVVRDLRANIAAEAGARQTYE---ELIKLSPDEGTKQTLVHLLTREISHTQMFMKALDSLGK...................................................................................................................... 179
31 -16.3003pvr_A mol:protein length:311 Phenylacetic acid degradation protein paaA  ali model follow..  11  1.................MRSTQEERFEQRIAQETA-IEPQDWMPDAYR------------------KTLIRQIGQHAHSEIVGMLPEGNWITRAPTLRRKAI--------LLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRMKYSSIFNYPTL-ADIGVIGWLVDGAAIVNQVALCR----TSYGPYARAMVKICKEESFHQRQGFEACMALAQGSEAQK-QMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTNRQRFVDNTVPQVEMLGMTHFDTESGHYRFGEIDWQEFNEVINGRGICNQERLDAKRKAEGTWV--REAAL 299
32 -16.3003vpm_A mol:protein length:286 Ribonucleoside-diphosphate reductase subunit M2  ali model follow..  10  1......MGVEDEPLLRENPRRFVIFPIEY-KAEASFWTAEAV-------DLSKDIQHWESLKPEERYFISHVLAFFAASDGIVNENLVERFSQE--------QITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEREFKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEALPVKLIG--------------MNCTLMKQYIEFVADR-------------------------LMLELGFSKVFRVEN----PFDFM....... 286
33 -16.3002jcd_A mol:protein length:345 N-OXIDASE  ali model follow..  9  48...............AAVVNKADILDEWADYDTLVPDYPLEIVPFAEHPLFLA----PHQRQRVLTGMWIGYNERVIATEQLI---AEPAFDLVMHGVFPGSDDPLIRKSVQQAIVDESFHTYMHMLAIDRTRELPQPELVTYRRLRRVLADMPEQWERDIAVLVWGAVAETCINALLALLAR--DATIQPMHSLITTLHLRDETAHGSIVVEVVRELYEQQRRALVRCLPIALEAFAEQDLSALLLELNAAGIRGAEEIVGD--LRSTAGGTRLVRDFSGARKMVEQLGLDDAVDFDFPERPDWSPHTPR........................... 345
34 -16.3002qqy_A mol:protein length:149 Sigma B operon  ali model follow..  12  8.................................................................VKELIEGLNEDLAGEYSAIIMYNHNAATVS-----GIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRVKQA-----------EDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLND......................................................................................................................... 143
35 -16.1002o1z_A mol:protein length:311 Ribonucleotide Reductase Subunit R2  ali model follow..  10  27.EANEKILSKETDRFTLYPILYPDVWDFYKKAEASFWTAEEI-------DLSSDLKDFEKLNDNEKHFIKHVLAFFAASDGIVLENLASKFLRQ--------KITEAKKFYAFQIAVENIHSETYSLLIDNYIKDEKENIPAVKNKALWAAKWINDTNSFAERIVANACVEILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPEEVVQNIVKEAVE...................................................................................................... 257
36 -16.0001nf4_A mol:protein length:179 bacterioferritin  ali model follow..  16  4............................................................NREDRKAKVIEVLNKARAMEHAIHQYMNQHYSL------DDMDYGELAANMKLIAIDEMRHAENFAERIKELG-----------EPTTQKEGKVVTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHIKNLGDT.................................................................................................................. 152
37 -16.0002vux_A mol:protein length:326 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT M2 B  ali model follow..  8  27.SNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEV-------DLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQE--------QVPEARCFYGFQILIENVHSEMYSLLIDTYIRIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVK...................................................................................................... 258
38 -15.9002rcc_A mol:protein length:346 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  10  26.........KSSNVLNWDDVRFSWAYPLYKNMLANFWTPFEI-------NMSHDAKQFPTLTETEQEAFKKIIGLLAFLDSVQTDYSMRAAEYL--------TDSSLAALMSVLSFQEVVHNQSYSYVLSSLVPKATQERNEFIIDGYEKFVDNPTPKTFLESIVYDVILELNFYSGFAFFYNLARNQKMVSTSTMINYINRDEQLHVYLFTNIFKELLVEFPELNTEETKTFVKTTL.................................................................................................... 254
39 -15.6001bcf_A mol:protein length:158 BACTERIOFERRITIN  ali model follow..  9  2...............................................................KGDTKVINYLNKLLGNELVAINQYFLHARMFK-----NWGLKRLNDVEYHESIDEMKHADRYIERILFLE-----------LPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLI........................................................................................................................ 141
40 -15.6003hf1_A mol:protein length:351 Ribonucleoside-diphosphate reductase subunit M2 B  ali model follow..  8  29.SNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEV-------DLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQE--------QVPEARCFYGFQILIENVHSEMYSLLIDTYIRIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVK...................................................................................................... 260
41 -15.6004d8f_A mol:protein length:366 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  8  29LNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIMGKDIELWKSDRLSEDE------RRVILLNLGFFSTAESLVGNIVLAIFKHV--------TNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEITGKVLDPNFRTDSVEGLQEFVKNLVGYYIIMEIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASM----IDYVQHIADRRLERIGLKPIYHTKNPFPWMSETI-----DLNKEKNFFETRVIEQHAASLTW........ 360
42 -15.5002p1i_A mol:protein length:349 Ribonucleotide reductase, small chain  ali model follow..  11  28.ESNEKILNKESNRFTLHPIMYPEVWNFYKKAEASFWTAEEI-------DLSSDLKDFEKLNVNEKHFIKHVLAFFAASDGIVENLASKFLREV--------EIIEAKKFYSFQIAVENIHSETYSLLIDNYIKDEKENIPAIKNKALWAAKWINDTNSFAERIVANACVEILFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVKEAVE...................................................................................................... 258
43 -15.5001jk0_B mol:protein length:345 ribonucleoside-diphosphate reductase small chain 2  ali model follow..  6  1MEAHNQFLKTFQKERHDMKEAEKDEIL-YKKVEASFWTAEEI-------ELAKDTEDFQKLTDDQKTYIGNLLALSISSDNLVKYLIENFSAQL--------QNPEGKSFYGFQIMMENIYSEVYSMMVDAFFKDPKNIEVKHKAAFIERWISNDDSLYAERLVAFAAKEGIFQAGNYASMFWLTDKKIMPGLAMANRNICRDRGAYTDFSCLLFAHLRTKPNPKIIEKIITEAVE...................................................................................................... 252
44 -15.5001t0q_A mol:protein length:498 toluene, o-xylene monooxygenase oxygenase subunit  ali model follow..  11  1..MSMLKREDWYDLTRTTNELFPEEMSGARGISMEAWEKYD--PYKITYPEYVSIQREKDSGDRADPGWVSTMQLHFGAEYAASTAEARMARF--------AKAPGNRNMATFGMMDENRHGQIQLYFPYANVKRSRKWDWAHKAIHTNEWAAIAARSVAVSIMLTFAFETGFTNMQFLGLAADAAEAGDHTFASLISSIQTDESRHAQQGGPSLKILVENGKKDEAQQMVDVAIWRSWKLFSVLT-GPIMDYYTPLESRNQSFKEFMLEWIVAQFERQLLDLGLDKPWYWDQFMQDLDETHHGMHLGVWYWPTVWWDPAAGVSPEEREWLEEK.... 361
45 -15.4004cvp_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  9  1.............................................................AMKGDTKVINYLNKLLGNELVAINQYFLHARMFK-----NWGLKRLNDVEYRESIDEMKHADRYIERILFLE-----------LPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVRDYVSRDMMIEILRDEEGHIDWLETELDLI........................................................................................................................ 142
46 -15.3003fvb_A mol:protein length:182 Bacterioferritin  ali model follow..  12  12..........................................................GPGSMKGEPKVIERLNEALFLELGAVNQYWLHYRLLN-----DWGYTRLAKKEREESIEEMHHADKLIDRIIFLE-----------FPNLQTVSPLRIGQNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDLL........................................................................................................................ 156
47 -15.3003gvy_A mol:protein length:161 Bacterioferritin  ali model follow..  11  2...............................................................QGDAKVIEYLNAALRSELTAVSQYWLHYRLQE-----DWGFGSIAHKSRKESIEEMHHADKLIQRIIFLG-----------HPNLQRLNPLRIGQTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLM........................................................................................................................ 141
48 -15.3006cwo_A mol:protein length:344 Ribonucleotide reductase  ali model follow..  11  1MGSSSSGLVPRGSHMSIFDKRVPEVLQFTEAINKAYWVHTE-VDFTA-----DTQDFHAHLSLAEKTAVKNSLLAIAQIEVAVKSFWGNIYEHF--------PKPEFNGLGSTFAECEFRHSEAYSRLLEVLGYNDERRRVDYLSNVLKDTKSQDNRKYMVSLILFSILIE--NVSLFSQFAILLSFTRFKNVSNIIAWTSIDEQIHANGGIYIINKIREEFPDYFDEETLALVRETVKDSIAVESD------ILDWIFEEGEIESIKKGDLVNFMKFRIDE-------------------------SLKQINIPVIFDVKVEDYKALAWFEE..... 307
49 -15.3002inn_A mol:protein length:511 Phenol hydroxylase component phN  ali model follow..  10  37.EDFEGIKITDWSQWEDPFRLTMDAYWKYQAEKEKK--------YAIFDAFAQNNGHQNISDARYVNALKLFISGISPLEHAAFQGYSKVGRQ--------FSGAGARVACQMQAIDELRHSQTQQHAMSHYNKHFNGLHDGPHMHDRVWYLSRSAGPFEFLTAISFSFEYVLTNLLFVPFMSGAAYNGDMATVTFGFSAQSDEARHMTLGLEVIKFILEQHEDNV-PIVQRWIDKWFWRGFRLLSLVSMMMDYMLPNKVMSWSEAWEVEQNGGALFKDLERYGIRPPKYQDVANDAKHHLSHQLWTTFYQYCQATNFHTWIPEKEEMDWMSEK.... 364
50 -15.2004am2_A mol:protein length:159 BACTERIOFERRITIN  ali model follow..  13  2...............................................................KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLE-----DWGYKDLAKKWRAESIEEMAHADKFVERILFLE-----------LPNLQTLDPLRIGQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLV........................................................................................................................ 141
51 -15.2005zur_A mol:protein length:158 Bacterioferritin  ali model follow..  9  2...............................................................KGDKTVIQFLNKQLTNELTAINQYFLHARMLN-----HWGFDKLGKHEYEESIGEMKHADRLIARIFMLD-----------LPNLQDLHKLLIGEDVPELLACDLKLEQAAHATVREAIAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIDLI........................................................................................................................ 141
52 -15.2003n37_A mol:protein length:319 Ribonucleoside-diphosphate reductase 2 subunit beta  ali model follow..  6  1......MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKV-------PLSNDIPAWQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPD--------LTPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKDEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREELKSFAFDLL.................................................................................................... 226
53 -15.1005xx9_A mol:protein length:167 Bacterioferritin  ali model follow..  14  2...............................................................QGDPEVIEFLNEQLTAELTAINQYFLHAKLQD-----HKGWTKLAKYTRAESFDEMRHAEVLTDRILLLD-----------LPNYQRLFHVRVGQSVTEMFQADREVELEAIDRLRRGIEVMRAKHDITSANVFEAILADEEHHIDYLETQLDLI........................................................................................................................ 141
54 -15.1004bmo_A mol:protein length:322 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA  ali model follow..  10  1MRAVNWNKKEDDFSLM------------WKQNIAQFWTEEEI-------AVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVH--------ENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDAGIITSYYRRLLKPEVTKKELYMAMVASVFLEYLFYSGFFYPLYLAGQGKLTASGEIINLIIRDESIHGVFVGILAQQIFAELSAEEQQEVQKETQELL.................................................................................................... 229
55 -15.1001kgn_A mol:protein length:329 Ribonucleotide reductase protein R2F  ali model follow..  8  14.........DPVKAINWNVIPDEKDLEVWDRLTGNFWLPEKI-------PVSNDIQSWNKMTPQEQLATMRVFTGLTLLDTIQGTVGAISLLPD--------ETMHEEAVYTNIAFMESVHAKSYSNIFMTLASTPQIEENENLQRKAKIIMSYYNGDDPLKKKVASTLLEFLFYSGFYLPMYLSSRAKLTNTADIIRLIIRDESVHGYYIGYKYQQGVKKLSEAEQEEYKAYTFDLM.................................................................................................... 236
56 -15.0003bkn_A mol:protein length:161 Bacterioferritin  ali model follow..  15  2...............................................................QGDPDVLKLLNEQLTSELTAINQYFLHSKMQD-----NWGFTELAEHTRAESFEEMRHAETITDRILLLD-----------LPNYQRLFSLRVGQTLREQFEADLAIEYEVLERLKPGIVLCREKQDATSARLLEQILADEETHIDYLETQLQLM........................................................................................................................ 141
57 -15.0002inn_C mol:protein length:333 Phenol hydroxylase component phL  ali model follow..  4  60.PTRTAIRMEDWCAVSDPRQFYYGAYVGNRAKMQE--SAETSFGFCEKRNLLTRLS------EETQKQLLRLLVPLRHVELGANMNNAKIAGD--------ATATTVSQMHIYTGMDRLGIGQYLSRIALMIDGSTGAALDESKARKLVEDTLVVDDWFELTLVQNILIDGMMYPLVYDKMDQWFESQGAEDVSMLTEFMRDWYKESLRWTNAMMKAVAGESETNR................................................................................................................ 279
58 -15.0001jgc_A mol:protein length:161 bacterioferritin  ali model follow..  12  2...............................................................KGDAKVIEFLNAALRSELTAISQYWVHFRLQE-----DWGLAKMAKKSREESIEEMGHADKIIARILFLE-----------HPNLQKLDPLRIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISLY........................................................................................................................ 141
59 -15.0005d8x_A mol:protein length:158 Ferroxidase  ali model follow..  8  2...............................................................KGDKKVIQHLNKILGNELIAINQYFLHSRMWN-----DWGLKRLGAHEYHESIDEMKHADKLIERILFLE-----------APNLQDLGKLLIGANTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLI........................................................................................................................ 141
60 -14.9003e2c_A mol:protein length:158 Bacterioferritin  ali model follow..  9  2...............................................................KGDTKVINYLNKLLGNELVAINQYFLHARMFK-----NWGLKRLNDVEYHESIDEMKHADRYIERILFLE-----------LPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDERGHIDWLRTELDLI........................................................................................................................ 141
61 -14.9003is7_A mol:protein length:158 Bacterioferritin  ali model follow..  8  2...............................................................KGDKKVIQHLNKILGNELIAINQYFLHSRMWN-----DWGLKRLGAHEYHESIDEMKHADKLIERILFLE-----------LPNLQDLGKLLIGENTQEMLQCDLNLELKATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLI........................................................................................................................ 141
62 -14.9001fyz_A mol:protein length:527 METHANE MONOOXYGENASE COMPONENT A, ALPHA CHAIN  ali model follow..  13  66.EYARMEAVKDERQFGSLQDALTRL--NAGVRVHPKWN----------------------------ETMKVVSNFLEVGEYNAIAATGMLWDS--------AQAAEQKNGYLAQVLDEIRHTHQCAYVNYYFAKNGQDPAGHNDARRTRTI--ISGDAVECSLNLQLVGEACFTNPLIVAVTEWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLNLNNAFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYGVESPRSLKDAKQDAYWAHHDLYLLAYALWPTGFFRLALPDQEEMEWFEAN.... 375
63 -14.8003qb9_A mol:protein length:174 Bacterioferritin  ali model follow..  14  4...............................................................QGDPDVLRLLNEQLTSELTAINQYFLHSKMQD-----NWGFTELAAHTRAESFDEMRHAEEITDRILLLD-----------LPNYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................................................................ 143
64 -14.8002wtl_A mol:protein length:173 BACTERIOFERRITIN  ali model follow..  13  1..........................................................ASGSMQGDPDVLRLLNEQLTSELTAINQYFLHSKMQD-----NWGFTELAAHTRAESFDEMRHAEEITDRILLLD-----------LPNYQRIGSLRIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM........................................................................................................................ 145
65 -14.7002hz8_A mol:protein length:115 De novo designed diiron protein  ali model follow..  11  2....................................................................................................................DELRE------------LLKAEQQAIKIYKEVLKKAKEGDEQELARLIQEIVKAEKQAVKVYK---EAAEKARNPEKRQVIDKILEDEEKHIEWLKAASKQG........................................................................................................................ 88
66 -14.7001uzr_A mol:protein length:296 RIBONUCLEOTIDE REDUCTASE R2-2 SMALL SUBUNIT  ali model follow..  8  28............................WDRLTGNFWLPEKV-------PVSNDIPSWGTLTAGEKQLTMRVFTGLTMLDTIQTVGAVSLIPDA--------LTPHEEAVLTNIAFMESVHAKSYSQIFSTLCSTAEIDENRNLQRKAEIVLQSYRGDEPLKRKVASTLLEFLFYSGFYLPMYWSSRAKLTNTADMIRLIIRDEAVHGYYIGYKFQRGLALVDDVTRAELKDYTYELL.................................................................................................... 231
67 -14.6005n5e_e mol:protein length:99 PFC_05175  ali model follow..  14  19.............................................................................................................................................................EELMEILRLAIIAELDAINLYE---QMARYSEDENVRKILLDVAREEKAHVGEFMALLLNLDPEQV................................................................................................................... 81
68 -14.5004tof_A mol:protein length:158 Bacterioferritin  ali model follow..  8  2...............................................................KGDKKVIQHLNKILGNELIAINQYFLHSRMWN-----DWGLKRLGAHEYHESIDEMKHADKLIERILFLE-----------LPNLQDLGKLLIGENTQEMLQSDLNLELCATKDLREAIVHCEQVHDYVSRDLLKDILESEEEHIDYLETQLGLI........................................................................................................................ 141
69 -14.5004n83_A mol:protein length:319 Ribonucleoside-diphosphate reductase subunit beta  ali model follow..  11  22............................WEKLTEQFWLDTRI-------PLSNDLDDWRKLSHKEKDLVGKVFGGLTLLDTLQESGVDALRKDV--------RTAHEEAVFNNIQFMESVHAKSYSSIFSTLNTKSEID-NPYLQKKAEIINEIYLNGTALEKKIASVFLEFLFYSGFFTPLYYLGNNKLANVAEIIKLIIRDESVHGTYIGYKFQLAFNELPEDEQEKLKEWMYDLL.................................................................................................... 225
70 -14.5001r2f_A mol:protein length:319 PROTEIN (RIBONUCLEOTIDE REDUCTASE R2)  ali model follow..  6  1......MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKV-------PLSNDIPAWQTLSAAEQQLTIRVFTGLTLLDTQNIAGAPSLMADA--------ITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREELKLFALDLL.................................................................................................... 226
71 -14.4001sof_A mol:protein length:156 Bacterioferritin  ali model follow..  10  2...............................................................KGDKIVIQHLNKILGNELIAINQYFLHARMYE-----DWGLEKLGKHEYHESIDEMKHADKLIKRILFLE-----------LPNLQELGKLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLI........................................................................................................................ 141
72 -14.4006gp2_A mol:protein length:345 Ribonucleoside-diphosphate reductase beta chain  ali model follow..  8  14YNESVSPIEYAQQGFKGKMRSVNWNVVND-RITQNFWLPEKI-------PVSNDLTSWRTLTPEWQELITRTFTGLTLLDTIQTVGDVAQVPNS--------LTDHEQVIYTNFAFMVAVHARSFGSIFSTLCSSEQIE-TETLQERAKALIPYYVNDDPLKSKVAAALMPFLLYGGFYLPFYLSARGKLPNTSDIIRLILRDKVIHNYYSGYKYQKKVAKLSPEKQAEMKEFVFKLL.................................................................................................... 252
73 -13.9001h0n_A mol:protein length:390 RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE  ali model follow..  9  68.VEDEPLLRENPRRFVVFPIEYHDIWQMYKKAEASFWTAEEV-------DLSKDIQHWEALKPDERHFISHVLAFFAASDGIVNENLVERFSQE--------QVTEARCFYGFQIAMENIHSEMYSLLIDTYIKDPKEPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPAEQRVREIITNAVR...................................................................................................... 299
74 -13.8004mud_A mol:protein length:235 Ring oxydation complex/ phenylacetic acid degradation related protein  ali model follow..  11  12.............................................................PQDLTNTLVNIIELRADFELAMVEQYSPWLVNAPTVDSRLF--------VAKLVSDELNHGWQLVRLLEEFKVKDVIERISNARLGIHKLEVSNLPLF-EDVIAFTFLVDGAGLYQLKILKD----CSFEPLSTLASSMIKEEESHIFFSQNELRNYQNKNRQGAINFWFPRAVEMLHMTWSLNETHLRDLNISDLTKND-------INGYIKTTNEELKKCGYN.................................................... 220
75 -13.7001jk0_A mol:protein length:419 ribonucleoside-diphosphate reductase small chain 1  ali model follow..  7  87.EKEEPLLNEDKERTVLFPIKYHEIWQAYKRAEASFWTAEE-IDLSK-----DIHDWNNRMNENERFFISRVLAFFAASDGIVENLVENFSTEV--------QIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPKESEFGEKAEWALRWIQDADALFGERLVAFASIEGVFFSGSFASIFWLKKRGMMPGLTFSNELICRDEGLHTDFACLLFAHLKNKPDPAIVEKIVTEAVE...................................................................................................... 319
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;