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current user: public |
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Query: 2w0c_P mol:protein length:104 PROTEIN P3, from PDB1018 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 | |||||||
# | Score | Template | Links and tools | %id | First | MNTSVPTSVPTNQSVWGNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKTLLLGFGGLLVLGLVMRGNK | Last |
1 | -86.100 | 2w0c_P mol:protein length:104 PROTEIN P3 | ali model | 100 | 1 | MNTSVPTSVPTNQSVWGNVSTGLDALISGWARVEQIKAAKASTGQGRVEQAMTPELDNGAAVVVEAPKKAAQPSETLVFGVPQKTLLLGFGGLLVLGLVMRGNK | 104 |
2 | -6.890 | 3zif_R mol:protein length:216 PVIII | ali model follow.. | 15 | 1 | MSKEIPTAAAGASQDYSTRMNWFSAGPDMIHDVNNIRDAQNRILMTQSAITATPRNLID............................................. | 70 |
3 | -6.810 | 6cfw_I mol:protein length:115 MBH subunit | ali model follow.. | 19 | 3 | .............GYWD-IGLILAYLLNLWAKKSGMGTREVGEGSGEDPEKVIPGFEHLEGYYVNGVKKFFATLKNDHTGLLPDYVLLMTTAFILVILLLRG.. | 115 |
4 | -6.790 | 5tx1_U mol:protein length:227 PVIII | ali model follow.. | 18 | 1 | MSKEIPTLAAGASQDYSTRMNWLSAGPSMISRVNGVRSHRNQILLEQAAVTSTPR................................................. | 66 |
5 | -5.670 | 3juj_A mol:protein length:281 UDP-glucose pyrophosphorylase (GalU) | ali model follow.. | 16 | 3 | ...................................KKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTG............... | 56 |
6 | -5.620 | 2e3d_A mol:protein length:302 UTP--glucose-1-phosphate uridylyltransferase | ali model follow.. | 16 | 4 | ..............................INTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTH............... | 62 |
7 | -5.610 | 4d48_A mol:protein length:302 GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | ali model follow.. | 17 | 7 | .................................KVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGINEIVLVTH............... | 62 |
8 | -5.550 | 2pa4_A mol:protein length:323 UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE | ali model follow.. | 14 | 13 | ...................................KTVVVPAAGLGTRFLPATKTVPKELLPVVDTPGIELIAAEAAELGATRLAIITA............... | 66 |
9 | -5.480 | 6b1t_O mol:protein length:227 Pre-hexon-linking protein VIII | ali model follow.. | 18 | 1 | MSKEIPTLAAGAAQDYSTRINYMSAGPHMISRVNGIRAHRNRILLEQAAITTTPR................................................. | 66 |
10 | -5.450 | 4jd0_A mol:protein length:251 Nucleotidyl transferase | ali model follow.. | 13 | 6 | ...................................REAIVLASGAGKRLRSVTGDVPKVFYRFDGCELVKYPMISLMKNGVERFVLVVSEGYRDLGEKVLNDLG | 74 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10. |