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Query: 2ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A, from PDB1018

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLELast
1 -78.8002ww9_L mol:protein length:127 60S RIBOSOMAL PROTEIN L26-A  ali model  100  1MAKQSLDVSSDRRKARKAYFTAPSSQRRVLLSAPLSKELRAQYGIKALPIRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDKVTKEKVNGASVPINLHPSKLVITKLHLDKDRKALIQRKGGKLE 127
2 -75.7003j79_Z mol:protein length:126 60S ribosomal protein uL24  ali model follow..  49  1.MKFNKQKSSSRRKMRKAHFTAPAGLRRKIMSSKLSKELRLKYKTRSLPVRKDDEVLICRGHNHGREGKVVKINRKRYKIYVERVTREKVNGESTFIGIHPSNVVLTKLKVDKNRKKILDRKAAKEN 126
3 -75.3005xxb_X mol:protein length:141 Ribosomal protein uL24  ali model follow..  55  1.MKFSSQVSSSRRKSRKAHFSAPSSVRRKIMTAPLCKELRKKYNVRSLPIRKDDEVMVVRGHHHDREGKVTKVYRKKWVIHIERVTRDKANGETVTIGIHPSKVVITKAKLDKDRKALLERKSRATT 126
4 -74.5005xy3_Y mol:protein length:138 Ribosomal protein L24, putative  ali model follow..  46  1MVKTNPFVSSQARKVRKSYFNAKKDAKHVAMSAPLSKELQEANGIKRLPIRRDDEVMIFSGRMQNRTGKVTAVKLSEMRIYVDTFTTEKINGQAVSFPVHPSNVVITKLKMDKARKNLIELRRLGRD 127
5 -73.1003j7o_Y mol:protein length:145 Ribosomal protein uL24  ali model follow..  51  1.MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQ 127
6 -72.6003jcs_W mol:protein length:143 ribosomal protein L24  ali model follow..  51  1...MASIKCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGTFKGREGKVTACYRLKWVILIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKSILERKDRSSK 124
7 -72.4005t2a_X mol:protein length:143 uL24  ali model follow..  54  5.......KCGSRRKARRAHFQAPSHVRRVLMSAPLSKELRAKYNVRAMPVRKDDEVIVKRGAFKGREGKVTACYRLKWVIHIDKVNREKANGSTVAVGIHPSNVEITKLKLTHHRKAILERKDRSSK 124
8 -70.6005t5h_Z mol:protein length:113 60S ribosomal protein L26  ali model follow..  56  1.........GSRRKARRAHFQAPSHVRRILMSAPLSKELRAKYNVRAMPVRKDDEVRVKRGAYKGREGKVTACYRLRWVIHIDKVNREKANGTTVPVGVHPSNVEITKLKLNHNRKAILERK..... 113
9 -54.8001s72_T mol:protein length:120 50S ribosomal protein L24P  ali model follow..  31  1.......MSKQPDKQRKSQRRAPLHERHKQVRATLSADLREEYGQRNVRVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLEDEKREARLESEDDS. 119
10 -22.0001nkw_S mol:protein length:115 50S ribosomal protein L24  ali model follow..  23  1..................................MPRPSAGSHHNDKLHFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEGVNVITKNVKQRELALHASKVALVDPETGKATRVRKQIVDGKK. 103
11 -19.5005mlc_W mol:protein length:191 50S ribosomal protein L24, chloroplastic  ali model follow..  11  21LGQRLFPSPTTLQVKTEGHSPCLIVMRIKRWERKDCKP-NSLPKLHKRHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNFKTKH-IKIEAAIHSSNVMLILKEQEVADRVGHKILEDVRK 157
12 -18.5004wce_R mol:protein length:105 50S ribosomal protein L24  ali model follow..  24  1...............................................MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKETEAAIHVSNVQLLDPKTNEPTR........... 80
13 -18.5005v7q_U mol:protein length:105 50S ribosomal protein L24  ali model follow..  28  1...............................................MKVHKGDTVLVISGKDKGAKGKVLQAYPDRNRVLVEGVNRIKKHTATQEAPIHVSNVMVV.................... 74
14 -18.5005o60_V mol:protein length:105 50S ribosomal protein L24  ali model follow..  28  1...............................................MKVHKGDTVLVISGKDKGAKGKVLVAYPDRNKVLVEGVNRIKKHTATQEAPIHVSNVMVV.................... 74
15 -18.1003j3v_U mol:protein length:103 50S ribosomal protein L24  ali model follow..  23  1...............................................MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKNQEAPIHVSNVMPVGYKVEDGKKVRVAKKSGQ.. 99
16 -18.0004v4i_S mol:protein length:110 50S ribosomal protein L24  ali model follow..  29  3.............................................VKMHVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEGVNIVKKAVREKEAPLHASKVRPICPACGKPTR........... 84
17 -17.5004ce4_Y mol:protein length:216 MRPL24  ali model follow..  11  1.MRLSALLALASKVTLPPNYRSLSDKRKNPPGTRRRRVPVEPISDEDWHLFCGDKVEILEGKDAGKQGKVVQVIRQRNWVVVEGLNTHYRY-IPSEAPLLHNQVKLVDPTDRKPTDVEWRFTEAGER 143
18 -17.5003j7z_U mol:protein length:104 50S ribosomal protein L24  ali model follow..  27  2..............................................AAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPEKEAAIQVSNVAIFNAATGKADR........... 82
19 -16.3005mmi_V mol:protein length:192 plastid ribosomal protein uL24c  ali model follow..  13  56...................................DCKPNSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKH-IKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRK 158
20 -15.9003j7y_V mol:protein length:216 uL24  ali model follow..  13  42...................................RPVVVEPISDEDWYLFCGDTVEILEGKDAGKQGKVVQVIRQRNWVVVGGLNTHYRY-IPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGER 143
21 -15.7003j6b_Q mol:protein length:297 54S ribosomal protein L40, mitochondrial  ali model follow..  15  27..........LPHSEKFIKKSTPEFMKSDLKEVDEKTSFKS---EKEWKFIPGDRVVVMSGASKGNIAVIKSFDKRTNSFILDENGPTKTV-ITIPVSILGKDLRLV.................... 134
22 -11.8002e6z_A mol:protein length:59 Transcription elongation factor SPT5  ali model follow..  25  2...........................................SSGSSGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPK............................................ 41
23 -11.4005ohq_A mol:protein length:111 Transcription elongation factor SPT5  ali model follow..  17  54............................................LEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMD............................................ 92
24 -11.3004zn1_A mol:protein length:147 Transcription elongation factor Spt5  ali model follow..  25  85.............................................IIENIEKGDVVEIIAGPFKGERAKVIRVDKHKEEVTLELENA----AVPIPITLPVEGVKIVSKHKD............... 147
25 -11.2002kvq_G mol:protein length:63 Transcription antitermination protein nusG  ali model follow..  20  7..............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV....................... 60
26 -11.1002ckk_A mol:protein length:127 KIN17  ali model follow..  20  66............................................LETVIPAPGKRILVLNGGYRGNEGTLESINEKTFSATIV............................................ 104
27 -11.0003qqc_D mol:protein length:163 Transcription antitermination protein nusG  ali model follow..  22  88.............................................AVSGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDA----------------IVPIPVTIKGDYVRLISKLQKEEA 153
28 -10.9002do3_A mol:protein length:69 Transcription elongation factor SPT5  ali model follow..  28  12....................................QELRKYF-------KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHE....................................... 56
29 -10.9004ytl_A mol:protein length:99 Transcription elongation factor SPT5  ali model follow..  14  1.................................................FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLN............................................ 34
30 -10.8001m1g_A mol:protein length:248 Transcription antitermination protein nusG  ali model follow..  15  167....................GKPVPLKEEEVQN-ILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV------SIFGRMTPVELDFDQV....................... 245
31 -10.8005oho_A mol:protein length:113 Transcription elongation factor SPT5  ali model follow..  16  37.........................VRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVIDGPHSGREGEIRHLF--RSFAFLHCKKLVENGG----FVCKTRHLVLA.................... 113
32 -10.7002mi6_A mol:protein length:62 Transcription termination/antitermination protein NusG  ali model follow..  18  6..............................................EVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKV------SIFGRETPVELTFGQV....................... 59
33 -10.5006duq_M mol:protein length:60 Transcription termination/antitermination protein NusG  ali model follow..  20  4..............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV------SIFGRATPVELDFSQV....................... 57
34 -10.5001nz9_A mol:protein length:58 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  24  2..............................................QVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKV------TIFGRETPVELDFSQV....................... 55
35 -9.7802e70_A mol:protein length:71 Transcription elongation factor SPT5  ali model follow..  19  21....................................................GQTVRISQGPYKGYIGVVKDATESTARVELH............................................ 51
36 -9.5502lq8_A mol:protein length:177 Transcription antitermination protein nusG  ali model follow..  22  120..............................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKV------TIFGRETPVVLHVSEV....................... 173
37 -9.5205xog_W mol:protein length:83 Spt4/5 complex component  ali model follow..  22  21....................................................NKTVKIRQGGYKGKIGIVKEANGDRFRVELH............................................ 51
38 -9.5204ytk_A mol:protein length:130 Transcription elongation factor SPT5  ali model follow..  18  1.................................................LEEGSYVRIKRGIYKGDLAMVDQISENNLEVMLKIVPR........................................ 38
39 -9.3605ms0_F mol:protein length:183 Transcription termination/antitermination protein NusG  ali model follow..  20  127..............................................KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVS-----SIFGRATPVELDFSQV....................... 180
40 -9.0002xhc_A mol:protein length:352 TRANSCRIPTION ANTITERMINATION PROTEIN NUSG  ali model follow..  22  296..............................................ELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVN-----TIFGRETPVVLHVSEV....................... 349
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.